NO05G03520, NO05G03520 (gene) Nannochloropsis oceanica

Overview
NameNO05G03520
Unique NameNO05G03520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr5:923651..925240 +

Link to JBrowse

Properties
Property NameValue
Description40s ribosomal protein s15a
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:923651..925240 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR035987Ribosomal_S8_sf
IPR000630Ribosomal_S8
Homology
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: EWM28066.1 (40s ribosomal protein s15a [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 1.800e-66
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLADALKTISNAEDRGKKQVL+RPSSKV VKFLQVMQKNGYIGEFEIVDDHRGGKIV+DLIGRINKVGV+SPRFD+KYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY
Sbjct:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: XP_024586579.1 (hypothetical protein F444_22272 [Plasmopara halstedii] >CEG50210.1 hypothetical protein F444_22272 [Plasmopara halstedii])

HSP 1 Score: 223.4 bits (568), Expect = 4.100e-55
Identity = 104/130 (80.00%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLAD LKT+ NAE RGK+QVL+RPSSKV VKFLQVMQKNGYIGEFEIVDDHR GKIVV+L GRINK GV+SPRFD+K  EYE W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct: 1225 MVRMSVLADCLKTMYNAEKRGKRQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELKGRINKCGVISPRFDVKLAEYEKWINNLLPSRQFGHIVVSTTYGIMDHHEARRKHTGGKIIGFFY 1354
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: XP_002897096.1 (40S ribosomal protein S15a [Phytophthora infestans T30-4] >XP_008915553.1 40S ribosomal protein S15a [Phytophthora parasitica INRA-310] >XP_009523228.1 hypothetical protein PHYSODRAFT_285440 [Phytophthora sojae] >EEY65467.1 40S ribosomal protein S15a [Phytophthora infestans T30-4] >EGZ20511.1 hypothetical protein PHYSODRAFT_285440 [Phytophthora sojae] >ETK71004.1 40S ribosomal protein S15a [Phytophthora parasitica] >ETL24447.1 40S ribosomal protein S15a [Phytophthora parasitica] >ETL77688.1 40S ribosomal protein S15a [Phytophthora parasitica] >ETM30932.1 40S ribosomal protein S15a [Phytophthora parasitica] >ETM99140.1 40S ribosomal protein S15a [Phytophthora parasitica INRA-310] >ETO59361.1 40S ribosomal protein S15a [Phytophthora parasitica P1976] >ETP00396.1 40S ribosomal protein S15a [Phytophthora parasitica CJ01A1] >ETP28550.1 40S ribosomal protein S15a [Phytophthora parasitica P10297] >KUF76465.1 40S ribosomal protein S15a [Phytophthora nicotianae] >KUF95503.1 hypothetical protein AM588_10010378 [Phytophthora nicotianae] >POM73626.1 40S ribosomal protein S15a [Phytophthora palmivora var. palmivora])

HSP 1 Score: 222.2 bits (565), Expect = 9.200e-55
Identity = 103/130 (79.23%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLAD LKT+ NAE RGK+QVL+RPSSKV VKFLQVMQKNGYIGEFEIVDDHR GKIVV+L GRINK GV+SPRFD+K  +YE W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRGKRQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELKGRINKCGVISPRFDVKLADYEKWINNLLPSRQFGHIVVSTTYGIMDHHEARRKHTGGKIIGFFY 130
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: AEX20387.1 (40S ribosomal protein S15a [Pyropia haitanensis])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-54
Identity = 100/130 (76.92%), Postives = 120/130 (92.31%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVL DALKT+SNAE RGK+QV++RPSSKV +KFLQ+MQK+GYIGEFE VDDHR GKIVV+LIGR+NK GV+SPRFD+K G+ ENWVNN+LPSRQFG+I++TT++GIMDHEEAR + TGGK+LGFFY
Sbjct:    1 MVRMSVLGDALKTLSNAEKRGKRQVMLRPSSKVVIKFLQIMQKHGYIGEFEYVDDHRAGKIVVNLIGRLNKCGVISPRFDVKVGQVENWVNNLLPSRQFGYIMLTTSYGIMDHEEARAKHTGGKILGFFY 130
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: ETI30606.1 (40S ribosomal protein S15a [Phytophthora parasitica P1569])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-54
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLAD LKT+ NAE R K+QVL+RPSSKV VKFLQVMQKNGYIGEFEIVDDHR GKIVV+L GRINK GV+SPRFD+K  +YE W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRSKRQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELKGRINKCGVISPRFDVKLADYEKWINNLLPSRQFGHIVVSTTYGIMDHHEARRKHTGGKIIGFFY 130
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: XP_009844215.1 (40S ribosomal protein S15a [Aphanomyces astaci] >ETV66309.1 40S ribosomal protein S15a [Aphanomyces astaci])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-54
Identity = 101/130 (77.69%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLAD LKTI NAE RGK+QVLVRPSSKV VKFLQ MQKNGYIGEFEI+DDHRGGKIV++L GRINK GV+SPRFD+K  + E W+NN+LPSRQFGH+V++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIIDDHRGGKIVIELRGRINKCGVISPRFDVKQSDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKATGGKIIGFFY 130
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: XP_008880289.1 (40S ribosomal protein S15a [Aphanomyces invadans] >ETV91092.1 40S ribosomal protein S15a [Aphanomyces invadans])

HSP 1 Score: 219.5 bits (558), Expect = 5.900e-54
Identity = 103/130 (79.23%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLAD LKTI NAE RGK+QVLVRPSSKV VKFLQ MQKNGYIGEFEIVDDHRGGKIVV+L GRINK GV+SPRFD+K  + E W+NN+LPSRQFGH+V++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:   27 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDVKQHDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKQTGGKIIGFFY 156
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: XP_008880288.1 (40S ribosomal protein S15a, variant [Aphanomyces invadans] >ETV91093.1 40S ribosomal protein S15a, variant [Aphanomyces invadans])

HSP 1 Score: 219.5 bits (558), Expect = 5.900e-54
Identity = 103/130 (79.23%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLAD LKTI NAE RGK+QVLVRPSSKV VKFLQ MQKNGYIGEFEIVDDHRGGKIVV+L GRINK GV+SPRFD+K  + E W+NN+LPSRQFGH+V++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDVKQHDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKQTGGKIIGFFY 130
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: CBJ26992.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 218.8 bits (556), Expect = 1.000e-53
Identity = 103/130 (79.23%), Postives = 115/130 (88.46%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MV+M VLAD LKTISNAE RGK+QVL+RP SKV VKFLQVMQKNGYIGEFEIVDDHR GKIVV+L GRINK GV+SPRFD+   + E WVNN+LP+R FGHIV+TTTFGIMDHEEARR+ TGGK+LGFFY
Sbjct:   58 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELTGRINKCGVISPRFDMPLQDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 187
[Close]
BLAST of NO05G03520 vs. NCBI_GenBank
Match: OSX69604.1 (hypothetical protein BU14_1358s0003 [Porphyra umbilicalis])

HSP 1 Score: 218.4 bits (555), Expect = 1.300e-53
Identity = 101/130 (77.69%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVL DALKT+SNAE RGK+QVL+RPSSKV +KFLQVMQ +GYIGEFE VDDHR GKIVV+LIGR+NK GV+SPRFD+K G  ENWVNN+LPSRQFG+I++TT++GIMDHEEAR + TGGK+LGFFY
Sbjct:    1 MVRMSVLGDALKTLSNAEKRGKRQVLLRPSSKVVIKFLQVMQTHGYIGEFEYVDDHRAGKIVVNLIGRLNKCGVISPRFDIKVGSIENWVNNLLPSRQFGYIMLTTSYGIMDHEEARAKHTGGKILGFFY 130
The following BLAST results are available for this feature:
BLAST of NO05G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28066.11.800e-6696.1540s ribosomal protein s15a [Nannochloropsis gadita... [more]
XP_024586579.14.100e-5580.00hypothetical protein F444_22272 [Plasmopara halste... [more]
XP_002897096.19.200e-5579.2340S ribosomal protein S15a [Phytophthora infestans... [more]
AEX20387.14.500e-5476.9240S ribosomal protein S15a [Pyropia haitanensis][more]
ETI30606.14.500e-5478.4640S ribosomal protein S15a [Phytophthora parasitic... [more]
XP_009844215.14.500e-5477.6940S ribosomal protein S15a [Aphanomyces astaci] >E... [more]
XP_008880289.15.900e-5479.2340S ribosomal protein S15a [Aphanomyces invadans] ... [more]
XP_008880288.15.900e-5479.2340S ribosomal protein S15a, variant [Aphanomyces i... [more]
CBJ26992.11.000e-5379.23conserved unknown protein [Ectocarpus siliculosus][more]
OSX69604.11.300e-5377.69hypothetical protein BU14_1358s0003 [Porphyra umbi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003511NSK003511Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03520.1NO05G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584770gene_3161Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g11gene2512Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03520.1NO05G03520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03520 ID=NO05G03520|Name=NO05G03520|organism=Nannochloropsis oceanica|type=gene|length=1590bp
ATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGC
AGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGA
CAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGgtgcgtgggagtcgtga
aggatggaggggagggagggagagttgggtgaaggctggctcaaggattg
agtagacaaggaagttaaattgtatgtgttcatgtggagagcatagccgt
gtcgaagcaggtgaagagacatgagccgaggcctgcgaatcggaggaggg
agggagaggggctggagatctaaccccatccgtagaaccatccgtgattt
gttctgacaaagagaagggaggaaaacggaggcgtgtacttttatttgga
ttcgcaagctaacactctgttcacagagcccggccttctcttttcagccg
gccgtggcgatgactgtcatcaattttttcgcattgcaagatcaaacctg
agggacaacactcaccgccggggattgtttcaggaactaggcggccttat
gtttccctcacacttatcacatccacgttacaatacatgtgacgtgtgtc
tcttaccctttctttcatctcatatttttcaactgaactcattccctccc
ctcctctctccatcccgcctgccccttatcttcagGCTACATCGGCGAGT
TCGAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGGTGGACCTGATT
GGACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTA
CGGCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTCCCGTCAGgtat
gtctccgtgtttctatcccaaggccagatccggagatgggcgggttttga
gtgggatatgttttgtctctgatggtgtctttgtgtctgacgtgcgtctg
actgatagggtcgtgttataccctcccgtcacggagatgcccaagaatgc
tcttgattttgtgtgtgttcttcttttataatgaaactgtgtggattcta
tctttttttgcattgtttggctgtttggggtttgagagaagagaggggag
atgaggtgggtggagctcgtgtcgtcttattctttttttgcccacctggt
tgttaagagtttatgcacaccttactttcctttctaattgggctgagtgt
gtctgtgtgcttgtagtacatggctatatgtgtgtgtgtgtgtcagaata
agcaacgaatggaaggactttgatgatgatcgtaaacgaaagattttctg
acacctcttgtaggaggctgttgccacaacggcagtcgatgaacgcactc
acgtttaaacacacctgaatgaagtccacatttcctctctatctctcgcc
gtctctccgcccttctgtttccctcttctaaccctttcctccctccctcc
ctccatccttccctccttccctccttctctctctgttacagTTCGGGCAC
ATTGTCATGACGACAACGTTCGGCATCATGGATCACGAGGAGGCGCGTCG
GCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTAA
back to top

protein sequence of NO05G03520.1

>NO05G03520.1-protein ID=NO05G03520.1-protein|Name=NO05G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEF
EIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFG
HIVMTTTFGIMDHEEARRRFTGGKLLGFFY*
back to top
Synonyms
Publications