NO05G03520.1, NO05G03520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03520.1
Unique NameNO05G03520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length393
Alignment locationchr5:923651..925240 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:923651..925240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03520.1 vs.
Match: EWM28066.1 (40s ribosomal protein s15a [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 1.800e-66
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEFEIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 131
            MVRMSVLADALKTISNAEDRGKKQVL+RPSSKV VKFLQVMQKNGYIGEFEIVDDHRGGKIV+DLIGRINKVGV+SPRFD+KYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY
Sbjct:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
The following BLAST results are available for this feature:
BLAST of NO05G03520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28066.11.800e-6696.1540s ribosomal protein s15a [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03520NO05G03520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03520.1NO05G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03520.1.cds1NO05G03520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03520.1.cds2NO05G03520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03520.1.cds3NO05G03520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03520.1 ID=NO05G03520.1|Name=NO05G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
ATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGC
AGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGA
CAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGGCTACATCGGCGAGTTC
GAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGGTGGACCTGATTGG
ACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTACG
GCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTCCCGTCAGTTCGGG
CACATTGTCATGACGACAACGTTCGGCATCATGGATCACGAGGAGGCGCG
TCGGCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTAA
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protein sequence of NO05G03520.1

>NO05G03520.1-protein ID=NO05G03520.1-protein|Name=NO05G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MVRMSVLADALKTISNAEDRGKKQVLVRPSSKVTVKFLQVMQKNGYIGEF
EIVDDHRGGKIVVDLIGRINKVGVLSPRFDLKYGEYENWVNNVLPSRQFG
HIVMTTTFGIMDHEEARRRFTGGKLLGFFY*
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mRNA from alignment at chr5:923651..925240+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03520.1 ID=NO05G03520.1|Name=NO05G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp|location=Sequence derived from alignment at chr5:923651..925240+ (Nannochloropsis oceanica)
ATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGC
AGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGA
CAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGGTGCGTGGGAGTCGTGA
AGGATGGAGGGGAGGGAGGGAGAGTTGGGTGAAGGCTGGCTCAAGGATTG
AGTAGACAAGGAAGTTAAATTGTATGTGTTCATGTGGAGAGCATAGCCGT
GTCGAAGCAGGTGAAGAGACATGAGCCGAGGCCTGCGAATCGGAGGAGGG
AGGGAGAGGGGCTGGAGATCTAACCCCATCCGTAGAACCATCCGTGATTT
GTTCTGACAAAGAGAAGGGAGGAAAACGGAGGCGTGTACTTTTATTTGGA
TTCGCAAGCTAACACTCTGTTCACAGAGCCCGGCCTTCTCTTTTCAGCCG
GCCGTGGCGATGACTGTCATCAATTTTTTCGCATTGCAAGATCAAACCTG
AGGGACAACACTCACCGCCGGGGATTGTTTCAGGAACTAGGCGGCCTTAT
GTTTCCCTCACACTTATCACATCCACGTTACAATACATGTGACGTGTGTC
TCTTACCCTTTCTTTCATCTCATATTTTTCAACTGAACTCATTCCCTCCC
CTCCTCTCTCCATCCCGCCTGCCCCTTATCTTCAGGCTACATCGGCGAGT
TCGAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGGTGGACCTGATT
GGACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTA
CGGCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTCCCGTCAGGTAT
GTCTCCGTGTTTCTATCCCAAGGCCAGATCCGGAGATGGGCGGGTTTTGA
GTGGGATATGTTTTGTCTCTGATGGTGTCTTTGTGTCTGACGTGCGTCTG
ACTGATAGGGTCGTGTTATACCCTCCCGTCACGGAGATGCCCAAGAATGC
TCTTGATTTTGTGTGTGTTCTTCTTTTATAATGAAACTGTGTGGATTCTA
TCTTTTTTTGCATTGTTTGGCTGTTTGGGGTTTGAGAGAAGAGAGGGGAG
ATGAGGTGGGTGGAGCTCGTGTCGTCTTATTCTTTTTTTGCCCACCTGGT
TGTTAAGAGTTTATGCACACCTTACTTTCCTTTCTAATTGGGCTGAGTGT
GTCTGTGTGCTTGTAGTACATGGCTATATGTGTGTGTGTGTGTCAGAATA
AGCAACGAATGGAAGGACTTTGATGATGATCGTAAACGAAAGATTTTCTG
ACACCTCTTGTAGGAGGCTGTTGCCACAACGGCAGTCGATGAACGCACTC
ACGTTTAAACACACCTGAATGAAGTCCACATTTCCTCTCTATCTCTCGCC
GTCTCTCCGCCCTTCTGTTTCCCTCTTCTAACCCTTTCCTCCCTCCCTCC
CTCCATCCTTCCCTCCTTCCCTCCTTCTCTCTCTGTTACAGTTCGGGCAC
ATTGTCATGACGACAACGTTCGGCATCATGGATCACGAGGAGGCGCGTCG
GCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTAA
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Coding sequence (CDS) from alignment at chr5:923651..925240+

>NO05G03520.1 ID=NO05G03520.1|Name=NO05G03520.1|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at chr5:923651..925240+ (Nannochloropsis oceanica)
ATGGTGCGCATGAGCGTGTTGGCCGATGCCCTCAAGACCATCTCCAACGC
AGAGGACCGAGGAAAGAAGCAGGTGCTGGTCCGTCCCTCATCCAAGGTGA
CAGTCAAGTTCTTGCAAGTCATGCAGAAGAACGGCTACATCGGCGAGTTC
GAGATCGTGGACGATCATCGAGGAGGGAAGATTGTGGTGGACCTGATTGG
ACGAATCAACAAGGTCGGCGTGCTCTCTCCCCGTTTCGATCTCAAGTACG
GCGAGTACGAAAACTGGGTCAACAACGTTTTGCCCTCCCGTCAGTTCGGG
CACATTGTCATGACGACAACGTTCGGCATCATGGATCACGAGGAGGCGCG
TCGGCGGTTCACGGGAGGAAAGCTCTTGGGATTCTTCTATTAA
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Synonyms
Publications