NO05G03490, NO05G03490 (gene) Nannochloropsis oceanica

Overview
NameNO05G03490
Unique NameNO05G03490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2330
Alignment locationchr5:915465..917794 -

Link to JBrowse

Properties
Property NameValue
DescriptionPrefoldin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:915465..917794 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036415Lamin_tail_dom_sf
IPR001322Lamin_tail_dom
Homology
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BLAST of NO05G03490 vs. NCBI_GenBank
Match: EWM28057.1 (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 4.900e-46
Identity = 104/181 (57.46%), Postives = 130/181 (71.82%), Query Frame = 0 
Query:  512 IETYRELAASQDLQFSLVYIQEVNTYEDYLVIENRTNLDVSLAGWSLAGALSSDGTGEYEMKFDFPDELMLSAGSKVTVWWGPKNLGFKLHPTRGNVYWEGSDKYDIFQPQDDAVLLQDAEYCEMSRMRIINGKRRARAGPMAPSPSSDAKRARTSYPPSPLGEAGLSSGRGGGGGFGMRT 693
            ++ YRELA SQ  Q SLVYIQEVN   DYLV+ENRTNLDVSLAGW+L  +LS     E E++F+FP+ELMLS+ + + VWWG +N+ +K  PTRGN++WE SD+ DIFQ Q+D VLL DAE CEMSRMRI++ KRRARAGP   +P+ D+KR R+S P S         G G    FG+RT
Sbjct:  488 VDVYRELAGSQHDQISLVYIQEVNAQADYLVVENRTNLDVSLAGWALGTSLS-----ESEIQFEFPEELMLSSRASLKVWWGARNISYKSRPTRGNLFWEESDRIDIFQAQNDEVLLMDAEGCEMSRMRIVSDKRRARAGPFVGTPTPDSKRFRSS-PWS-------GGGSGMRDNFGVRT 655
The following BLAST results are available for this feature:
BLAST of NO05G03490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28057.14.900e-4657.46Prefoldin [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003515NSK003515Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03490.1NO05G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669941gene_3158Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g14gene2509Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03490.1NO05G03490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03490 ID=NO05G03490|Name=NO05G03490|organism=Nannochloropsis oceanica|type=gene|length=2330bp
ATGGTCAAAACGCGGTCCTCTGgtacgttttcctctgactgcttgtctcc
ctctttcttacattccatccgagaagagcgaccatattgcccctcctgaa
aaacctttccttgctcagcttataggcaccacaacactgctctattttct
ccgacctgttagggttgtgaatggggccagaattatctggttggctagtc
gtttatcaaagcttaagatgtctcactctgacctccccttctccgctcca
tcgcaccaaaacataagACGTGCCGGCCAGCACCTATGTCGAGGATGGGG
CGAGGCCATGCAGCCAGGAACGCAAACAACATGCGTACAAGCGGATGGTA
GAATACGTGGCGAAAGTGAAAGACCTCGAGACACAAAACCGGGAGCTCCG
TGTTCAGGTGCAACAAGGCCGGGGCAGCGTGGCTGGCAGCACTAAACCAA
GCAGCAGCAGTAGCAGTGGCAGCAGATGGGGAAGCGCACGAGTAAGCAGT
CCCGAGAGCAAAGAGCTGCATAAGCTCCGACAGGAGAACAAGGCGTTAGA
AACCAAGGTTAAGGATGCACGGCGGGTAAATCAAGAGTTGCGAGAGCAGT
TTAACGAATCATTTGAGGACGCTAAGTCCAAGTTTCGGAGTCAGGGGCGC
ATTCACGGCAATCAGATGGCGGCCAAGAAAGCGGAGGAATTGTCGGCGCA
AATTGCGTACCTGAAGGATGCGCTGGAGCGTTTGACGAAGACGAATAAGG
AGCTGGAGACGGAGAGTCGGCGGCTCAAGAAGGAAGGAAGGGACGGCTCC
GAGCTACGCAGTCAGGTGGAGGAGTTGCGCGAAGAATTGTTGCGTGCGAG
ACAACACCAGTCGAATTTAGAACGGAACGTAGAAAATTTGCAAGACGAGA
AGGAAAATCTACTGAGAGAGCTTGAACATCAGGATGGGCGAAAAAGCTTG
GAGGTGGTGGAGGAGGGAGACCGACCACGCGTGGTGGAACTAGAATCAGA
GATCCGTGAGCTCAAGGAGGTGGTGGAAAGGCTGAGACTTGAGCTGGAGG
GAAGAATCTATGCAGAGGGGGAGCAGGATCGGTTGAAGGAGGAAGTGGAG
GATTTGAAGACAAGATTGAGGGCGGCGATGACAAAGCTAGCCGAACAAGC
ACAAGGTCACGCGAGCGTAGTAGAGGAGCGAGAAAAGGATTACGATCAGG
TGGTTGCTGCATTAGAGGAGGTGAAAGCTCATGTACGGAGGGAAGAGGGG
CGTGGCCAGGAGCTACAGGAGGAGGTGGAGAGGCTGACCAAAGCACAGAA
TGCGGCAGAGGACCGAGTGCGTCGGCTGGAATGCAGCCCGAGCCGGACAC
AGGGGGAGGCGGATGCAGCAATTTTAAGTGTTCTAGGGAAAGACATTGAT
AGAATGGAACGAGCAAATGAGCGGTTGGGGCAGGAGGTAAGCGATCTGGA
GGCGGATAAAGCAGCTTTGGAGGAGGAGGTGCGAAACCTGAATTTCGACC
ACGAGGCGGAGCGGAAGCAGGCTGTGGCCACATTGGCCAAGGAGAAGAAG
GCATTGCAGCGAGAGATTGATCGGTTGACGGGGGAGTTAGAGGAGGCAGA
TGCGAAGATAACTCAAGCGCACGCAGAAGCGGCGGCCGCTCAAGCAGATG
CGTTAGAGGCAGTGGCGAGCCGTGATGGTAGCAGCGCGCCAGAGGAGAGG
AGGAAGGGAAAAGATGAAACAGAGATGGAGGAGGACGTGCTGCATCTTCA
GGAAGAGAACGCAGTATTGCAACGGGAGATAGAGACATATCGAGAATTGG
CTGCCAGCCAGGACCTGCAGTTTTCACTTGTATACATCCAGGAGGTGAAT
ACCTACGAGGATTACCTTGTGATAGAGAATCGCACCAACCTCGACGTGAG
TTTAGCTGGGTGGAGTTTGGCTGGTGCTTTGTCGTCAGATGGTACAGGCG
AGTATGAGATGAAATTCGACTTTCCTGATGAACTCATGCTCTCGGCCGGG
TCGAAGGTAACAGTGTGGTGGGGCCCTAAGAATTTGGGGTTCAAGTTGCA
TCCGACGCGTGGAAATGTGTACTGGGAGGGTAGTGACAAGTACGATATTT
TTCAACCGCAGGATGATGCGGTATTGTTGCAGGACGCGGAGTATTGCGAA
ATGTCGCGCATGCGGATTATCAATGGCAAGCGCCGAGCGAGGGCAGGGCC
GATGGCGCCGTCTCCCAGCTCCGATGCGAAGCGCGCCCGGACGTCTTATC
CCCCGTCTCCTTTAGGAGAAGCAGGGTTAAGCAGTGGTCGGGGTGGCGGT
GGTGGGTTTGGGATGCGGACATTGTATTAA
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protein sequence of NO05G03490.1

>NO05G03490.1-protein ID=NO05G03490.1-protein|Name=NO05G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp
MVKTRSSDVPASTYVEDGARPCSQERKQHAYKRMVEYVAKVKDLETQNRE
LRVQVQQGRGSVAGSTKPSSSSSSGSRWGSARVSSPESKELHKLRQENKA
LETKVKDARRVNQELREQFNESFEDAKSKFRSQGRIHGNQMAAKKAEELS
AQIAYLKDALERLTKTNKELETESRRLKKEGRDGSELRSQVEELREELLR
ARQHQSNLERNVENLQDEKENLLRELEHQDGRKSLEVVEEGDRPRVVELE
SEIRELKEVVERLRLELEGRIYAEGEQDRLKEEVEDLKTRLRAAMTKLAE
QAQGHASVVEEREKDYDQVVAALEEVKAHVRREEGRGQELQEEVERLTKA
QNAAEDRVRRLECSPSRTQGEADAAILSVLGKDIDRMERANERLGQEVSD
LEADKAALEEEVRNLNFDHEAERKQAVATLAKEKKALQREIDRLTGELEE
ADAKITQAHAEAAAAQADALEAVASRDGSSAPEERRKGKDETEMEEDVLH
LQEENAVLQREIETYRELAASQDLQFSLVYIQEVNTYEDYLVIENRTNLD
VSLAGWSLAGALSSDGTGEYEMKFDFPDELMLSAGSKVTVWWGPKNLGFK
LHPTRGNVYWEGSDKYDIFQPQDDAVLLQDAEYCEMSRMRIINGKRRARA
GPMAPSPSSDAKRARTSYPPSPLGEAGLSSGRGGGGGFGMRTLY*
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Synonyms
Publications