NO05G03490.1, NO05G03490.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G03490.1
Unique Name	NO05G03490.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2085
Alignment location	chr5:915465..917794 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:915465..917794 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G03490.1 vs.
Match: EWM28057.1 (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 499.6 bits (1285), Expect = 1.600e-137
Identity = 349/703 (49.64%), Postives = 451/703 (64.15%), Query Frame = 0

Query:    1 MVKTRSSDVPASTYVEDGARPCSQERKQHAYKRMVEYVAKVKDLETQNRELRVQVQQGRGSVAGSTKPSSSSSSGSRWGSARVSSPES-KELHKLRQENKALETKVKDARRVNQELREQFNESFEDAKSKFRSQGRIHGNQMAAKKAEELSAQIAYLKDALERLTKTNKELETESRRLKKEGRDGSELRSQVEELREELLRARQHQSNLERNVENLQDEKENLLRELEHQDGRKSLEVVEEGDRPRVVELESEIRELKEVVERLRLELEGRIYAEGEQDRLKEEVEDLKTRLRAAMTKLAEQAQGHASVVEEREKDYDQVVAALEEVKAHVRREEGRGQELQEEVERLTKAQNAAEDRVRRLECSPSRTQGEADAAILSVLGKDID------RMERANERLGQEVSDLEADKAALEEEVRNLNFDHEAERKQAVATLAKEKKALQREIDRLTGELEEADAKITQAHAEAAAAQADALEAVASRDGSSAPEERRKGKDE----TEMEEDVLHLQEENAVLQREIETYRELAASQDLQFSLVYIQEVNTYEDYLVIENRTNLDVSLAGWSLAGALSSDGTGEYEMKFDFPDELMLSAGSKVTVWWGPKNLGFKLHPTRGNVYWEGSDKYDIFQPQDDAVLLQDAEYCEMSRMRIINGKRRARAGPMAPSPSSDAKRARTSYPPSPLGEAGLSSGRGGGGGFGMRT 693
            MV+TR SD    T    G    ++ R    YK++ EYV +VKDLE  N++LR ++++  G          +   G R  S R+SSP   K++  LRQ  + LE+K+K+ARR NQ+LREQFNESFEDA+ KFRSQGRIHGN MAAKKA+E S QI YLKD++ RL KT KELE E RRL++E ++       V+ELR +L RA +  + LERNVENLQDE ENL RELEHQ+GR SL VV E ++P V ELE+EIR LKE VE L  +L  R+ A  E + LK+EVE+L+  L+AA            S   ER +  D +V  LE  +   R+E+ R QELQ+  E L +AQ AAE++ RRLE SPSRT  +A A  L    K ++      R ER N+ LG +V  L+ DK ALE+EVR L    E +R+QA A LA+E ++L+R+IDRL  EL+ A+AK   A   +A+A A AL+ V       A   RR+G+      TE   +   L EENA L+RE++ YRELA SQ  Q SLVYIQEVN   DYLV+ENRTNLDVSLAGW+L  +LS     E E++F+FP+ELMLS+ + + VWWG +N+ +K  PTRGN++WE SD+ DIFQ Q+D VLL DAE CEMSRMRI++ KRRARAGP   +P+ D+KR R+S P S         G G    FG+RT
Sbjct:    1 MVRTRKSDAAPGTPAI-GKDKQNKSRGDDMYKQVEEYVMRVKDLEITNKQLREELRRSGGD--------DTVGKGIRC-STRMSSPNCVKKMRDLRQHIQTLESKIKEARRENQQLREQFNESFEDAREKFRSQGRIHGNLMAAKKADEFSGQILYLKDSVHRLEKTVKELEAERRRLQQEVKE-------VDELRNDLKRAEERHAMLERNVENLQDENENLERELEHQEGRHSLGVVVEEEKPGVPELEAEIRTLKEQVEGLTEDLRTRMSAAEETESLKDEVEELRASLKAA-----------TSADRERREARDSIVTQLEVCREQARKEKDRCQELQKRAEALVEAQKAAEEKARRLEDSPSRTIVKARATALESTVKSLEGELSLLRRER-NKNLG-DVDALQEDKEALEDEVRRLALQIEQQRRQAEAVLARETESLERKIDRLQEELDTANAKSVAAVEASASAVARALQEV-----GPASAARRQGRGTSLGGTEEGSEQRLLVEENARLRREVDVYRELAGSQHDQISLVYIQEVNAQADYLVVENRTNLDVSLAGWALGTSLS-----ESEIQFEFPEELMLSSRASLKVWWGARNISYKSRPTRGNLFWEESDRIDIFQAQNDEVLLMDAEGCEMSRMRIVSDKRRARAGPFVGTPTPDSKRFRSS-PWS-------GGGSGMRDNFGVRT 655

The following BLAST results are available for this feature:

BLAST of NO05G03490.1 vs.

BLAST of NO05G03490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28057.1	1.600e-137	49.64	Prefoldin [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G03490	NO05G03490	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03490.1	NO05G03490.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03490.1.cds1	NO05G03490.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G03490.1.cds2	NO05G03490.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:915465..917794-
coding sequence from alignment at chr5:915465..917794-

mRNA sequence

>NO05G03490.1 ID=NO05G03490.1|Name=NO05G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
ATGGTCAAAACGCGGTCCTCTGACGTGCCGGCCAGCACCTATGTCGAGGA
TGGGGCGAGGCCATGCAGCCAGGAACGCAAACAACATGCGTACAAGCGGA
TGGTAGAATACGTGGCGAAAGTGAAAGACCTCGAGACACAAAACCGGGAG
CTCCGTGTTCAGGTGCAACAAGGCCGGGGCAGCGTGGCTGGCAGCACTAA
ACCAAGCAGCAGCAGTAGCAGTGGCAGCAGATGGGGAAGCGCACGAGTAA
GCAGTCCCGAGAGCAAAGAGCTGCATAAGCTCCGACAGGAGAACAAGGCG
TTAGAAACCAAGGTTAAGGATGCACGGCGGGTAAATCAAGAGTTGCGAGA
GCAGTTTAACGAATCATTTGAGGACGCTAAGTCCAAGTTTCGGAGTCAGG
GGCGCATTCACGGCAATCAGATGGCGGCCAAGAAAGCGGAGGAATTGTCG
GCGCAAATTGCGTACCTGAAGGATGCGCTGGAGCGTTTGACGAAGACGAA
TAAGGAGCTGGAGACGGAGAGTCGGCGGCTCAAGAAGGAAGGAAGGGACG
GCTCCGAGCTACGCAGTCAGGTGGAGGAGTTGCGCGAAGAATTGTTGCGT
GCGAGACAACACCAGTCGAATTTAGAACGGAACGTAGAAAATTTGCAAGA
CGAGAAGGAAAATCTACTGAGAGAGCTTGAACATCAGGATGGGCGAAAAA
GCTTGGAGGTGGTGGAGGAGGGAGACCGACCACGCGTGGTGGAACTAGAA
TCAGAGATCCGTGAGCTCAAGGAGGTGGTGGAAAGGCTGAGACTTGAGCT
GGAGGGAAGAATCTATGCAGAGGGGGAGCAGGATCGGTTGAAGGAGGAAG
TGGAGGATTTGAAGACAAGATTGAGGGCGGCGATGACAAAGCTAGCCGAA
CAAGCACAAGGTCACGCGAGCGTAGTAGAGGAGCGAGAAAAGGATTACGA
TCAGGTGGTTGCTGCATTAGAGGAGGTGAAAGCTCATGTACGGAGGGAAG
AGGGGCGTGGCCAGGAGCTACAGGAGGAGGTGGAGAGGCTGACCAAAGCA
CAGAATGCGGCAGAGGACCGAGTGCGTCGGCTGGAATGCAGCCCGAGCCG
GACACAGGGGGAGGCGGATGCAGCAATTTTAAGTGTTCTAGGGAAAGACA
TTGATAGAATGGAACGAGCAAATGAGCGGTTGGGGCAGGAGGTAAGCGAT
CTGGAGGCGGATAAAGCAGCTTTGGAGGAGGAGGTGCGAAACCTGAATTT
CGACCACGAGGCGGAGCGGAAGCAGGCTGTGGCCACATTGGCCAAGGAGA
AGAAGGCATTGCAGCGAGAGATTGATCGGTTGACGGGGGAGTTAGAGGAG
GCAGATGCGAAGATAACTCAAGCGCACGCAGAAGCGGCGGCCGCTCAAGC
AGATGCGTTAGAGGCAGTGGCGAGCCGTGATGGTAGCAGCGCGCCAGAGG
AGAGGAGGAAGGGAAAAGATGAAACAGAGATGGAGGAGGACGTGCTGCAT
CTTCAGGAAGAGAACGCAGTATTGCAACGGGAGATAGAGACATATCGAGA
ATTGGCTGCCAGCCAGGACCTGCAGTTTTCACTTGTATACATCCAGGAGG
TGAATACCTACGAGGATTACCTTGTGATAGAGAATCGCACCAACCTCGAC
GTGAGTTTAGCTGGGTGGAGTTTGGCTGGTGCTTTGTCGTCAGATGGTAC
AGGCGAGTATGAGATGAAATTCGACTTTCCTGATGAACTCATGCTCTCGG
CCGGGTCGAAGGTAACAGTGTGGTGGGGCCCTAAGAATTTGGGGTTCAAG
TTGCATCCGACGCGTGGAAATGTGTACTGGGAGGGTAGTGACAAGTACGA
TATTTTTCAACCGCAGGATGATGCGGTATTGTTGCAGGACGCGGAGTATT
GCGAAATGTCGCGCATGCGGATTATCAATGGCAAGCGCCGAGCGAGGGCA
GGGCCGATGGCGCCGTCTCCCAGCTCCGATGCGAAGCGCGCCCGGACGTC
TTATCCCCCGTCTCCTTTAGGAGAAGCAGGGTTAAGCAGTGGTCGGGGTG
GCGGTGGTGGGTTTGGGATGCGGACATTGTATTAA

protein sequence of NO05G03490.1

>NO05G03490.1-protein ID=NO05G03490.1-protein|Name=NO05G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=695bp
MVKTRSSDVPASTYVEDGARPCSQERKQHAYKRMVEYVAKVKDLETQNRE
LRVQVQQGRGSVAGSTKPSSSSSSGSRWGSARVSSPESKELHKLRQENKA
LETKVKDARRVNQELREQFNESFEDAKSKFRSQGRIHGNQMAAKKAEELS
AQIAYLKDALERLTKTNKELETESRRLKKEGRDGSELRSQVEELREELLR
ARQHQSNLERNVENLQDEKENLLRELEHQDGRKSLEVVEEGDRPRVVELE
SEIRELKEVVERLRLELEGRIYAEGEQDRLKEEVEDLKTRLRAAMTKLAE
QAQGHASVVEEREKDYDQVVAALEEVKAHVRREEGRGQELQEEVERLTKA
QNAAEDRVRRLECSPSRTQGEADAAILSVLGKDIDRMERANERLGQEVSD
LEADKAALEEEVRNLNFDHEAERKQAVATLAKEKKALQREIDRLTGELEE
ADAKITQAHAEAAAAQADALEAVASRDGSSAPEERRKGKDETEMEEDVLH
LQEENAVLQREIETYRELAASQDLQFSLVYIQEVNTYEDYLVIENRTNLD
VSLAGWSLAGALSSDGTGEYEMKFDFPDELMLSAGSKVTVWWGPKNLGFK
LHPTRGNVYWEGSDKYDIFQPQDDAVLLQDAEYCEMSRMRIINGKRRARA
GPMAPSPSSDAKRARTSYPPSPLGEAGLSSGRGGGGGFGMRTLY*

mRNA from alignment at chr5:915465..917794-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G03490.1 ID=NO05G03490.1|Name=NO05G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2330bp|location=Sequence derived from alignment at chr5:915465..917794- (Nannochloropsis oceanica)
ATGGTCAAAACGCGGTCCTCTGGTACGTTTTCCTCTGACTGCTTGTCTCC
CTCTTTCTTACATTCCATCCGAGAAGAGCGACCATATTGCCCCTCCTGAA
AAACCTTTCCTTGCTCAGCTTATAGGCACCACAACACTGCTCTATTTTCT
CCGACCTGTTAGGGTTGTGAATGGGGCCAGAATTATCTGGTTGGCTAGTC
GTTTATCAAAGCTTAAGATGTCTCACTCTGACCTCCCCTTCTCCGCTCCA
TCGCACCAAAACATAAGACGTGCCGGCCAGCACCTATGTCGAGGATGGGG
CGAGGCCATGCAGCCAGGAACGCAAACAACATGCGTACAAGCGGATGGTA
GAATACGTGGCGAAAGTGAAAGACCTCGAGACACAAAACCGGGAGCTCCG
TGTTCAGGTGCAACAAGGCCGGGGCAGCGTGGCTGGCAGCACTAAACCAA
GCAGCAGCAGTAGCAGTGGCAGCAGATGGGGAAGCGCACGAGTAAGCAGT
CCCGAGAGCAAAGAGCTGCATAAGCTCCGACAGGAGAACAAGGCGTTAGA
AACCAAGGTTAAGGATGCACGGCGGGTAAATCAAGAGTTGCGAGAGCAGT
TTAACGAATCATTTGAGGACGCTAAGTCCAAGTTTCGGAGTCAGGGGCGC
ATTCACGGCAATCAGATGGCGGCCAAGAAAGCGGAGGAATTGTCGGCGCA
AATTGCGTACCTGAAGGATGCGCTGGAGCGTTTGACGAAGACGAATAAGG
AGCTGGAGACGGAGAGTCGGCGGCTCAAGAAGGAAGGAAGGGACGGCTCC
GAGCTACGCAGTCAGGTGGAGGAGTTGCGCGAAGAATTGTTGCGTGCGAG
ACAACACCAGTCGAATTTAGAACGGAACGTAGAAAATTTGCAAGACGAGA
AGGAAAATCTACTGAGAGAGCTTGAACATCAGGATGGGCGAAAAAGCTTG
GAGGTGGTGGAGGAGGGAGACCGACCACGCGTGGTGGAACTAGAATCAGA
GATCCGTGAGCTCAAGGAGGTGGTGGAAAGGCTGAGACTTGAGCTGGAGG
GAAGAATCTATGCAGAGGGGGAGCAGGATCGGTTGAAGGAGGAAGTGGAG
GATTTGAAGACAAGATTGAGGGCGGCGATGACAAAGCTAGCCGAACAAGC
ACAAGGTCACGCGAGCGTAGTAGAGGAGCGAGAAAAGGATTACGATCAGG
TGGTTGCTGCATTAGAGGAGGTGAAAGCTCATGTACGGAGGGAAGAGGGG
CGTGGCCAGGAGCTACAGGAGGAGGTGGAGAGGCTGACCAAAGCACAGAA
TGCGGCAGAGGACCGAGTGCGTCGGCTGGAATGCAGCCCGAGCCGGACAC
AGGGGGAGGCGGATGCAGCAATTTTAAGTGTTCTAGGGAAAGACATTGAT
AGAATGGAACGAGCAAATGAGCGGTTGGGGCAGGAGGTAAGCGATCTGGA
GGCGGATAAAGCAGCTTTGGAGGAGGAGGTGCGAAACCTGAATTTCGACC
ACGAGGCGGAGCGGAAGCAGGCTGTGGCCACATTGGCCAAGGAGAAGAAG
GCATTGCAGCGAGAGATTGATCGGTTGACGGGGGAGTTAGAGGAGGCAGA
TGCGAAGATAACTCAAGCGCACGCAGAAGCGGCGGCCGCTCAAGCAGATG
CGTTAGAGGCAGTGGCGAGCCGTGATGGTAGCAGCGCGCCAGAGGAGAGG
AGGAAGGGAAAAGATGAAACAGAGATGGAGGAGGACGTGCTGCATCTTCA
GGAAGAGAACGCAGTATTGCAACGGGAGATAGAGACATATCGAGAATTGG
CTGCCAGCCAGGACCTGCAGTTTTCACTTGTATACATCCAGGAGGTGAAT
ACCTACGAGGATTACCTTGTGATAGAGAATCGCACCAACCTCGACGTGAG
TTTAGCTGGGTGGAGTTTGGCTGGTGCTTTGTCGTCAGATGGTACAGGCG
AGTATGAGATGAAATTCGACTTTCCTGATGAACTCATGCTCTCGGCCGGG
TCGAAGGTAACAGTGTGGTGGGGCCCTAAGAATTTGGGGTTCAAGTTGCA
TCCGACGCGTGGAAATGTGTACTGGGAGGGTAGTGACAAGTACGATATTT
TTCAACCGCAGGATGATGCGGTATTGTTGCAGGACGCGGAGTATTGCGAA
ATGTCGCGCATGCGGATTATCAATGGCAAGCGCCGAGCGAGGGCAGGGCC
GATGGCGCCGTCTCCCAGCTCCGATGCGAAGCGCGCCCGGACGTCTTATC
CCCCGTCTCCTTTAGGAGAAGCAGGGTTAAGCAGTGGTCGGGGTGGCGGT
GGTGGGTTTGGGATGCGGACATTGTATTAA

Coding sequence (CDS) from alignment at chr5:915465..917794-

>NO05G03490.1 ID=NO05G03490.1|Name=NO05G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=2085bp|location=Sequence derived from alignment at chr5:915465..917794- (Nannochloropsis oceanica)
ATGGTCAAAACGCGGTCCTCTGACGTGCCGGCCAGCACCTATGTCGAGGA
TGGGGCGAGGCCATGCAGCCAGGAACGCAAACAACATGCGTACAAGCGGA
TGGTAGAATACGTGGCGAAAGTGAAAGACCTCGAGACACAAAACCGGGAG
CTCCGTGTTCAGGTGCAACAAGGCCGGGGCAGCGTGGCTGGCAGCACTAA
ACCAAGCAGCAGCAGTAGCAGTGGCAGCAGATGGGGAAGCGCACGAGTAA
GCAGTCCCGAGAGCAAAGAGCTGCATAAGCTCCGACAGGAGAACAAGGCG
TTAGAAACCAAGGTTAAGGATGCACGGCGGGTAAATCAAGAGTTGCGAGA
GCAGTTTAACGAATCATTTGAGGACGCTAAGTCCAAGTTTCGGAGTCAGG
GGCGCATTCACGGCAATCAGATGGCGGCCAAGAAAGCGGAGGAATTGTCG
GCGCAAATTGCGTACCTGAAGGATGCGCTGGAGCGTTTGACGAAGACGAA
TAAGGAGCTGGAGACGGAGAGTCGGCGGCTCAAGAAGGAAGGAAGGGACG
GCTCCGAGCTACGCAGTCAGGTGGAGGAGTTGCGCGAAGAATTGTTGCGT
GCGAGACAACACCAGTCGAATTTAGAACGGAACGTAGAAAATTTGCAAGA
CGAGAAGGAAAATCTACTGAGAGAGCTTGAACATCAGGATGGGCGAAAAA
GCTTGGAGGTGGTGGAGGAGGGAGACCGACCACGCGTGGTGGAACTAGAA
TCAGAGATCCGTGAGCTCAAGGAGGTGGTGGAAAGGCTGAGACTTGAGCT
GGAGGGAAGAATCTATGCAGAGGGGGAGCAGGATCGGTTGAAGGAGGAAG
TGGAGGATTTGAAGACAAGATTGAGGGCGGCGATGACAAAGCTAGCCGAA
CAAGCACAAGGTCACGCGAGCGTAGTAGAGGAGCGAGAAAAGGATTACGA
TCAGGTGGTTGCTGCATTAGAGGAGGTGAAAGCTCATGTACGGAGGGAAG
AGGGGCGTGGCCAGGAGCTACAGGAGGAGGTGGAGAGGCTGACCAAAGCA
CAGAATGCGGCAGAGGACCGAGTGCGTCGGCTGGAATGCAGCCCGAGCCG
GACACAGGGGGAGGCGGATGCAGCAATTTTAAGTGTTCTAGGGAAAGACA
TTGATAGAATGGAACGAGCAAATGAGCGGTTGGGGCAGGAGGTAAGCGAT
CTGGAGGCGGATAAAGCAGCTTTGGAGGAGGAGGTGCGAAACCTGAATTT
CGACCACGAGGCGGAGCGGAAGCAGGCTGTGGCCACATTGGCCAAGGAGA
AGAAGGCATTGCAGCGAGAGATTGATCGGTTGACGGGGGAGTTAGAGGAG
GCAGATGCGAAGATAACTCAAGCGCACGCAGAAGCGGCGGCCGCTCAAGC
AGATGCGTTAGAGGCAGTGGCGAGCCGTGATGGTAGCAGCGCGCCAGAGG
AGAGGAGGAAGGGAAAAGATGAAACAGAGATGGAGGAGGACGTGCTGCAT
CTTCAGGAAGAGAACGCAGTATTGCAACGGGAGATAGAGACATATCGAGA
ATTGGCTGCCAGCCAGGACCTGCAGTTTTCACTTGTATACATCCAGGAGG
TGAATACCTACGAGGATTACCTTGTGATAGAGAATCGCACCAACCTCGAC
GTGAGTTTAGCTGGGTGGAGTTTGGCTGGTGCTTTGTCGTCAGATGGTAC
AGGCGAGTATGAGATGAAATTCGACTTTCCTGATGAACTCATGCTCTCGG
CCGGGTCGAAGGTAACAGTGTGGTGGGGCCCTAAGAATTTGGGGTTCAAG
TTGCATCCGACGCGTGGAAATGTGTACTGGGAGGGTAGTGACAAGTACGA
TATTTTTCAACCGCAGGATGATGCGGTATTGTTGCAGGACGCGGAGTATT
GCGAAATGTCGCGCATGCGGATTATCAATGGCAAGCGCCGAGCGAGGGCA
GGGCCGATGGCGCCGTCTCCCAGCTCCGATGCGAAGCGCGCCCGGACGTC
TTATCCCCCGTCTCCTTTAGGAGAAGCAGGGTTAAGCAGTGGTCGGGGTG
GCGGTGGTGGGTTTGGGATGCGGACATTGTATTAA

Synonyms

Publications