NO05G03480, NO05G03480 (gene) Nannochloropsis oceanica

Overview
NameNO05G03480
Unique NameNO05G03480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr5:913891..914904 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:913891..914904 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G03480 vs. NCBI_GenBank
Match: EWM28055.1 (hypothetical protein Naga_100044g15 [Nannochloropsis gaditana])

HSP 1 Score: 99.8 bits (247), Expect = 1.800e-17
Identity = 94/296 (31.76%), Postives = 136/296 (45.95%), Query Frame = 0 
Query:   30 HSAQAATYSRNPLARALHMTGKALQRRVQAAKVDKRQQMRKHWQHAAQDEDEDLVTSMEVDAEEAANGPRGRARSNRHRIVRQLK-QTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNFKEVVGGNGDITTAALDGKPPVEVSAFQQHRTLILGVAFCGGIVLLALAFTFLRQAKLWRXXXXXXXXXXXXXXGSGATLETSPHKKRPMELNSV--TAAGGVENPSSPSTGREGRGEKSMSGRLAGERAAGNSSTNRSKIMVREESRIDSSRAPNTGRGDFFQLKEIDLGVQS 323
            + A  AT+S NPLARA+  TGKA+ RR+    +D+ +            + ED+                      R R++R+L+ +                                 ++ K++    GD    A++ + P +     QH TLI G+A  GG+V+LA+AFT  R+  L R                 A    SP +KRPMEL +V  TAAG +    SP+ G++  G   +SGRLA ERA       + +I+ REES + S+R P T RGDFFQLKEIDL ++S
Sbjct:   26 NDAVEATHSFNPLARAVKKTGKAMYRRIMKVGIDRTRH--------GHTDSEDVSIRXXXXXXXXXXXXXXXXXXGRRRVIRKLEGKNSSTHEDQSLAYEQVGGIKNSSTKPEPMKISLDMHIKDIDAPAGDSAPVAINSELPPDTPPVVQHNTLIAGLAVAGGLVILAVAFTCFRRIYLRRSEEHTQERP--------AAAIGSP-RKRPMELQNVSSTAAGDL----SPA-GQDRPG--LLSGRLAEERAG-----EKGRIITREESSLGSARLPFTVRGDFFQLKEIDLAMRS 292
The following BLAST results are available for this feature:
BLAST of NO05G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28055.11.800e-1731.76hypothetical protein Naga_100044g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003516NSK003516Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03480.1NO05G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584757gene_3157Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g15gene2508Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03480.1NO05G03480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03480 ID=NO05G03480|Name=NO05G03480|organism=Nannochloropsis oceanica|type=gene|length=1014bp
ATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGCCTCTTCCACCTCT
TGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTGCACTCCGCCCAAG
CAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCTCCACATGACAGGT
AAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAGACAAGCGCCAGCA
GATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAGGACGAGGATCTGG
TAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAATGGACCGCGAGGA
AGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAACTCAAACAAACAGA
CGATGAGACAGAGGATGAAGATGAGGATGGAGAAAACGACTCCGGTGCGA
CGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTACGCTCGACCTGAAT
TTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCACTGCTGCCCTCGA
CGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAGCATCGTACGCTTA
TTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTTGGCGCTGGCATTT
ACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACGCTTGAGACATCGC
CCCATAAAAAACGGCCCATGGAATTGAATTCGGTGACGGCGGCAGGAGGG
GTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAGGGAGGGGGGAGAA
GTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCAGGCAACAGCAGCA
CCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCGGATCGATAGTAGC
CGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGTTGAAGGAAATCGA
TTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGGTCGAAGGTATTTT
CGCCTCGTGGTTAA
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protein sequence of NO05G03480.1

>NO05G03480.1-protein ID=NO05G03480.1-protein|Name=NO05G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MARRQHHRRRLVPLPPLVLAAIVLVVAILHSAQAATYSRNPLARALHMTG
KALQRRVQAAKVDKRQQMRKHWQHAAQDEDEDLVTSMEVDAEEAANGPRG
RARSNRHRIVRQLKQTDDETEDEDEDGENDSGATPAAPQPEPMKITLDLN
FKEVVGGNGDITTAALDGKPPVEVSAFQQHRTLILGVAFCGGIVLLALAF
TFLRQAKLWRQQQQQQQQQQQQLRGSGATLETSPHKKRPMELNSVTAAGG
VENPSSPSTGREGRGEKSMSGRLAGERAAGNSSTNRSKIMVREESRIDSS
RAPNTGRGDFFQLKEIDLGVQSPGRGGPGSKVFSPRG*
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Synonyms
Publications