NO05G03480.1, NO05G03480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03480.1
Unique NameNO05G03480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr5:913891..914904 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:913891..914904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03480.1 vs.
Match: EWM28055.1 (hypothetical protein Naga_100044g15 [Nannochloropsis gaditana])

HSP 1 Score: 155.6 bits (392), Expect = 2.700e-34
Identity = 124/322 (38.51%), Postives = 184/322 (57.14%), Query Frame = 0 
Query:    4 RQHHRRRLVPLPPLVLAAIVLVVAILHSAQAATYSRNPLARALHMTGKALQRRVQAAKVDKRQQMRKHWQHAAQDEDEDLVTSMEVDAEEAANGPRGRARSNRHRIVRQLKQTDDET-EDEDEDGENDSGATPAAPQPEPMKITLDLNFKEVVGGNGDITTAALDGKPPVEVSAFQQHRTLILGVAFCGGIVLLALAFTFLRQAKLWRQQQQQQQQQQQQLRGSGATLETSPHKKRPMELNSV--TAAGGVENPSSPSTGREGRGEKSMSGRLAGERAAGNSSTNRSKIMVREESRIDSSRAPNTGRGDFFQLKEIDLGVQS 323
            R + RR  + +P  +LA + L   + + A  AT+S NPLARA+  TGKA+ RR+    +D+ +            + ED+   + VDAE+A+   RGR R  R R++R+L+  +  T ED+    E   G   ++ +PEPMKI+LD++ K++    GD    A++ + P +     QH TLI G+A  GG+V+LA+AFT  R+  L R ++  Q++         A    SP +KRPMEL +V  TAAG +    SP+ G++  G   +SGRLA ERA       + +I+ REES + S+R P T RGDFFQLKEIDL ++S
Sbjct:    3 RSYLRRSGLLVPVFLLAVLSL---LSNDAVEATHSFNPLARAVKKTGKAMYRRIMKVGIDRTRH--------GHTDSEDVSIRVHVDAEQASGRKRGRGRRGRRRVIRKLEGKNSSTHEDQSLAYEQVGGIKNSSTKPEPMKISLDMHIKDIDAPAGDSAPVAINSELPPDTPPVVQHNTLIAGLAVAGGLVILAVAFTCFRRIYLRRSEEHTQERP--------AAAIGSP-RKRPMELQNVSSTAAGDL----SPA-GQDRPG--LLSGRLAEERAG-----EKGRIITREESSLGSARLPFTVRGDFFQLKEIDLAMRS 292
The following BLAST results are available for this feature:
BLAST of NO05G03480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28055.12.700e-3438.51hypothetical protein Naga_100044g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03480NO05G03480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03480.1NO05G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03480.1.cds1NO05G03480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03480.1 ID=NO05G03480.1|Name=NO05G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
ATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGCCTCTTCCACCTCT
TGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTGCACTCCGCCCAAG
CAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCTCCACATGACAGGT
AAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAGACAAGCGCCAGCA
GATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAGGACGAGGATCTGG
TAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAATGGACCGCGAGGA
AGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAACTCAAACAAACAGA
CGATGAGACAGAGGATGAAGATGAGGATGGAGAAAACGACTCCGGTGCGA
CGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTACGCTCGACCTGAAT
TTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCACTGCTGCCCTCGA
CGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAGCATCGTACGCTTA
TTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTTGGCGCTGGCATTT
ACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACGCTTGAGACATCGC
CCCATAAAAAACGGCCCATGGAATTGAATTCGGTGACGGCGGCAGGAGGG
GTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAGGGAGGGGGGAGAA
GTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCAGGCAACAGCAGCA
CCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCGGATCGATAGTAGC
CGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGTTGAAGGAAATCGA
TTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGGTCGAAGGTATTTT
CGCCTCGTGGTTAA
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protein sequence of NO05G03480.1

>NO05G03480.1-protein ID=NO05G03480.1-protein|Name=NO05G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MARRQHHRRRLVPLPPLVLAAIVLVVAILHSAQAATYSRNPLARALHMTG
KALQRRVQAAKVDKRQQMRKHWQHAAQDEDEDLVTSMEVDAEEAANGPRG
RARSNRHRIVRQLKQTDDETEDEDEDGENDSGATPAAPQPEPMKITLDLN
FKEVVGGNGDITTAALDGKPPVEVSAFQQHRTLILGVAFCGGIVLLALAF
TFLRQAKLWRQQQQQQQQQQQQLRGSGATLETSPHKKRPMELNSVTAAGG
VENPSSPSTGREGRGEKSMSGRLAGERAAGNSSTNRSKIMVREESRIDSS
RAPNTGRGDFFQLKEIDLGVQSPGRGGPGSKVFSPRG*
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mRNA from alignment at chr5:913891..914904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03480.1 ID=NO05G03480.1|Name=NO05G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at chr5:913891..914904- (Nannochloropsis oceanica)
ATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGCCTCTTCCACCTCT
TGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTGCACTCCGCCCAAG
CAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCTCCACATGACAGGT
AAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAGACAAGCGCCAGCA
GATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAGGACGAGGATCTGG
TAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAATGGACCGCGAGGA
AGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAACTCAAACAAACAGA
CGATGAGACAGAGGATGAAGATGAGGATGGAGAAAACGACTCCGGTGCGA
CGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTACGCTCGACCTGAAT
TTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCACTGCTGCCCTCGA
CGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAGCATCGTACGCTTA
TTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTTGGCGCTGGCATTT
ACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACGCTTGAGACATCGC
CCCATAAAAAACGGCCCATGGAATTGAATTCGGTGACGGCGGCAGGAGGG
GTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAGGGAGGGGGGAGAA
GTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCAGGCAACAGCAGCA
CCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCGGATCGATAGTAGC
CGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGTTGAAGGAAATCGA
TTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGGTCGAAGGTATTTT
CGCCTCGTGGTTAA
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Coding sequence (CDS) from alignment at chr5:913891..914904-

>NO05G03480.1 ID=NO05G03480.1|Name=NO05G03480.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr5:913891..914904- (Nannochloropsis oceanica)
ATGGCACGACGCCAGCATCATCGTAGGCGCCTGGTGCCTCTTCCACCTCT
TGTCCTCGCCGCGATCGTCCTCGTCGTAGCAATCCTGCACTCCGCCCAAG
CAGCAACCTATTCTCGCAACCCTCTAGCCAGAGCCCTCCACATGACAGGT
AAGGCGCTGCAGCGACGCGTTCAGGCAGCTAAGGTAGACAAGCGCCAGCA
GATGCGTAAGCACTGGCAGCATGCCGCTCAGGACGAGGACGAGGATCTGG
TAACGAGCATGGAGGTGGATGCGGAGGAGGCAGCAAATGGACCGCGAGGA
AGGGCGCGCAGCAACCGGCATCGGATCGTTCGCCAACTCAAACAAACAGA
CGATGAGACAGAGGATGAAGATGAGGATGGAGAAAACGACTCCGGTGCGA
CGCCTGCTGCGCCCCAACCTGAGCCCATGAAGATTACGCTCGACCTGAAT
TTCAAGGAAGTGGTAGGAGGGAATGGAGACATTACCACTGCTGCCCTCGA
CGGGAAGCCACCTGTCGAAGTTTCTGCTTTCCAACAGCATCGTACGCTTA
TTCTTGGTGTGGCATTTTGTGGGGGGATCGTTCTCTTGGCGCTGGCATTT
ACCTTTCTTCGGCAAGCAAAGCTATGGCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTTGAGAGGTTCTGGGGCTACGCTTGAGACATCGC
CCCATAAAAAACGGCCCATGGAATTGAATTCGGTGACGGCGGCAGGAGGG
GTAGAAAATCCCAGTAGTCCTTCCACAGGACGAGAAGGGAGGGGGGAGAA
GTCGATGTCAGGGCGTTTGGCGGGAGAACGAGCAGCAGGCAACAGCAGCA
CCAATAGGAGTAAAATCATGGTGCGTGAAGAGAGTCGGATCGATAGTAGC
CGGGCGCCGAATACGGGCCGCGGAGATTTTTTCCAGTTGAAGGAAATCGA
TTTGGGGGTGCAGTCGCCCGGCAGGGGAGGGCCGGGGTCGAAGGTATTTT
CGCCTCGTGGTTAA
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Synonyms
Publications