NO05G03340, NO05G03340 (gene) Nannochloropsis oceanica

Overview
NameNO05G03340
Unique NameNO05G03340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr5:876293..877701 -

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Properties
Property NameValue
DescriptionZinc finger, RING-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:876293..877701 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
BLAST of NO05G03340 vs. NCBI_GenBank
Match: EWM28077.1 (Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 1.700e-61
Identity = 130/225 (57.78%), Postives = 154/225 (68.44%), Query Frame = 0
Query:  144 PSFSTGRPSLTQ---MDLARQERFRTRHVGLSELVQLPSTVYKELIARRRRERLERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDF------FPPSLSVLLKEGEVKSREEGGKXXXXXXXXXXXGSRGQAPKSFLENIYEIPRMAFMRVGNSLM 360
            P FS+   S  +   MD+ARQERF+TRHVG  EL+QLP+T+YKEL+ RRRRERL+RE G+ V++DE+ EEA FV  E E    +G + WE +E  G RHLCVICLEGFTPWD VRELPAC HIHHQRCLD+WLRGAASYEAC+TRSCPTCKTPI F        PS +V + E E K    G K                +P+S L NI+EIPR A+ R GNSLM
Sbjct:  157 PPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEA-AFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKM---GAKTDTV-----------SSPRSILSNIFEIPRWAYARAGNSLM 366          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_002178589.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50254.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 81.3 bits (199), Expect = 7.200e-12
Identity = 53/154 (34.42%), Postives = 68/154 (44.16%), Query Frame = 0
Query:  153 LTQMDLARQERFRTRHVGLSELVQLPSTVY---KELIARRRRERLERESGMGVLVDEEAEEAYFVMDEEEGF---RVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK-TPIDFFPP 300
            +TQMD+ R  R   RH+ +  + +LP   Y   K            RE    ++V  EA E +     +       V      E         +CVICLE F   D +R LP C H  H  C+D WL G++SYE CYT  CPTCK  P    PP
Sbjct:  283 ITQMDIVRMTRNAARHLDVDSIAKLPIMKYRSTKVASPTTAHASTVREGWSWMMVQGEANEEHEYQHYQSSLLSAAVTTSQPNETIVTSAHEDVCVICLECFDDGDSLRVLP-CNHSFHVGCIDRWLSGSSSYEDCYTSGCPTCKICPDGSLPP 435          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: GAX15634.1 (E3 ubiquitin-protein ligase RNF13 [Fistulifera solaris])

HSP 1 Score: 75.9 bits (185), Expect = 3.000e-10
Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 0
Query:  153 LTQMDLARQERFRTRHVGLSELVQLPSTVYK-ELIARRRRERL-------------ERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK 292
            ++QMD+ R  R  +RH+ +  +++LP+  Y+  L A R  E               + E    +LV E    +  V  +++  R +   +   +  E    +CVICLE F   D +R LP C H  H  C+D WL G+ S++ C+T  CPTCK
Sbjct:  288 ISQMDIVRMARSASRHLDVESILRLPTITYQSRLTATRIPEETSSDEEDDHSDSTGKPEEWSWMLVQEGGYGSKEVQHKDKRHRSRSNQKGLPDYAEDD-DVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCK 438          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: GAX19162.1 (E3 ubiquitin-protein ligase RNF167 [Fistulifera solaris])

HSP 1 Score: 72.8 bits (177), Expect = 2.600e-9
Identity = 46/155 (29.68%), Postives = 75/155 (48.39%), Query Frame = 0
Query:  153 LTQMDLARQERFRTRHVGLSELVQLPSTVYK-ELIARRRRERL-------------ERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWE--VEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK 292
            ++QMD+ R  R  +RH+ +  + +LP+  Y+  L A R  E               + E    +LV E    +  +  +++  R +    ++  + +      +CVICLE F   D +R LP C H  H  C+D WL G+ S++ C+T  CPTCK
Sbjct:  193 ISQMDIVRMARSASRHLDVESIFRLPTITYQSRLTATRIPEETSSDDEDDHSDSTGKPEEWSWMLVQEGGYGSKEIQHKDKRHRSRNFPSYQKGLPDYTEDDDVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCK 346          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_004967070.1 (RING-H2 finger protein ATL32 [Setaria italica])

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-7
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0
Query:  233 EGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPSLSVLLKEGE 310
            E + G   C ICL      +VV++LPAC H+ H+ C+DVWLR           +CP C++P+D  PP  + +L   E
Sbjct:   84 EKKAGGDECAICLGELQRGEVVKQLPACTHLFHEGCIDVWLRSNV--------TCPACRSPVDAAPPVAAQILLRTE 152          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: KQL10881.1 (hypothetical protein SETIT_007951mg [Setaria italica])

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-7
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0
Query:  233 EGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPSLSVLLKEGE 310
            E + G   C ICL      +VV++LPAC H+ H+ C+DVWLR           +CP C++P+D  PP  + +L   E
Sbjct:  122 EKKAGGDECAICLGELQRGEVVKQLPACTHLFHEGCIDVWLRSNV--------TCPACRSPVDAAPPVAAQILLRTE 190          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: OEU21552.1 (hypothetical protein FRACYDRAFT_235176 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-7
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0
Query:  240 LCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK 292
            +CVICL+ F   D +R LP C H  H  C+D WL G+ SY  C+T  CPTCK
Sbjct:  694 VCVICLDAFREGDRLRVLP-CDHSFHVGCIDRWLSGSHSYNECFTAGCPTCK 744          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_020151094.1 (E3 ubiquitin-protein ligase ATL9-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-7
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 0
Query:  234 GEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPID 296
            GEG  H C +CL    P +VV++LPAC H+ H RC+D WL           R+CP C++P+D
Sbjct:  103 GEG--HECAVCLAEIKPKEVVKQLPACTHLFHDRCIDEWLWS--------HRTCPVCRSPVD 154          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_003079051.1 (Zinc finger, RING/FYVE/PHD-type [Ostreococcus tauri] >CAL51932.1 Zinc finger, RING/FYVE/PHD-type [Ostreococcus tauri])

HSP 1 Score: 64.3 bits (155), Expect = 9.100e-7
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0
Query:  230 EVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPI 295
            EV E EG    C ICL+ +T  + +R LP+C+H+ H+ C D+WLRG+         +CP C+T +
Sbjct:  392 EVIESEGHDPTCTICLDDYTNGEELRRLPSCKHLFHKECADLWLRGSC--------TCPICRTSV 448          
BLAST of NO05G03340 vs. NCBI_GenBank
Match: OUS49687.1 (hypothetical protein BE221DRAFT_66928 [Ostreococcus tauri])

HSP 1 Score: 64.3 bits (155), Expect = 9.100e-7
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0
Query:  230 EVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPI 295
            EV E EG    C ICL+ +T  + +R LP+C+H+ H+ C D+WLRG+         +CP C+T +
Sbjct:  392 EVIESEGHDPTCTICLDDYTNGEELRRLPSCKHLFHKECADLWLRGSC--------TCPICRTSV 448          
The following BLAST results are available for this feature:
BLAST of NO05G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM28077.11.700e-6157.78Zinc finger, RING-type [Nannochloropsis gaditana][more]
XP_002178589.17.200e-1234.42predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX15634.13.000e-1031.37E3 ubiquitin-protein ligase RNF13 [Fistulifera sol... [more]
GAX19162.12.600e-929.68E3 ubiquitin-protein ligase RNF167 [Fistulifera so... [more]
XP_004967070.11.800e-737.66RING-H2 finger protein ATL32 [Setaria italica][more]
KQL10881.11.800e-737.66hypothetical protein SETIT_007951mg [Setaria itali... [more]
OEU21552.12.400e-751.92hypothetical protein FRACYDRAFT_235176 [Fragilario... [more]
XP_020151094.17.000e-743.55E3 ubiquitin-protein ligase ATL9-like [Aegilops ta... [more]
XP_003079051.19.100e-740.00Zinc finger, RING/FYVE/PHD-type [Ostreococcus taur... [more]
OUS49687.19.100e-740.00hypothetical protein BE221DRAFT_66928 [Ostreococcu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003528NSK003528Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03340.1NO05G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|398213gene_3144Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g27gene2498Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03340.1NO05G03340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03340 ID=NO05G03340|Name=NO05G03340|organism=Nannochloropsis oceanica|type=gene|length=1409bp
ACATCAAAGGCATTGTCGACAGCCTTTTTGGGATCATGCCTATGGAAGAG
GAGAAATGGCGGAGGTTGAACGTACAGAGCCGCGGAGGCACCAAGCTCGG
GGCTTCACCTATAACACACCACAACCATCACCACCACCCTTTCTTCCACC
ACAAGCATACATCGTCGCCGTTTAGTAGCAGTACTTTCCCTTCCATGGCA
GCCTCGCCGCACCTGTGCCGgtaagtagggcgtagattagactagactgt
ggatgttctgttaggcgggaggaagggggcgctctacattcccctatctg
atagatccctgctcttgactcaaaaagctccaattgcaacataccatcta
ccatggcctcaacggcggtggtagggttcaattgacaggcgtcctatatt
ttcagtattgaacatcatgcaacctctccacaccatgtcaccgtaactcc
tcaccttcctttccctcccttccagTACACCACTTGGCTCACCTGCGCCC
ATCTACAATTCATCCTCTGCCTCCTCCTCCGCCAATGCCACCCCCCGCCG
CCTTCGAAGCGGAAGCATCGGCTTGAGCGGCCTCGGCGCCTCCACGACCT
CCACCTCTTCCTCCTCATCTTCCTCTTCCTCCTCCCTTCTTCTTCCGAGC
AAAAGCGCATACGTTGGCGTCTTTCGCCATGCACCTGCCACGCGTGGTTT
TAAGGACTTGGTTTGGGAGCCATCTTTCTCTACGGGCCGTCCGTCTCTGA
CTCAGATGGACCTAGCGCGTCAAGAAAGGTTTAGGACGCGGCATGTTGGC
CTCTCTGAGTTGGTACAGCTTCCGTCTACGGTGTATAAGGAGTTGATTGC
CCGCCGTCGTCGCGAGCGGTTGGAGAGAGAATCGGGAATGGGGGTCCTGG
TGGATGAGGAGGCCGAGGAGGCCTACTTTGTGATGGACGAAGAGGAAGGG
TTTCGGGTGCAGGGAGGAGATGAGTGGGAGGTGGAGGAAGGGGAAGGCGG
GCGGCACCTGTGTGTGATTTGCTTGGAGGGATTTACACCGTGGGATGTGG
TCAGAGAATTACCTGCTTGCCAACACATTCACCATCAACGGTGTCTAGAT
GTTTGGTTGAGGGGAGCAGCGTCCTATGAGGCATGCTATACCCGGAGTTG
TCCGACGTGTAAGACCCCTATTGACTTCTTTCCTCCCTCCCTTTCTGTTT
TGCTCAAGGAGGGGGAGGTCAAGAGCAGGGAGGAGGGAGGGAAAGGAAAT
GAGGAGGGAAATGGAGGAGAGGGATGCGGCAGCAGAGGGCAGGCGCCGAA
GTCTTTTTTGGAGAATATTTACGAGATACCCAGGATGGCTTTTATGAGGG
TGGGCAACTCGCTTATGCAGCAGACTAGCAGCAGCAGCAGCAGCAGCAGC
AGAGTATAA
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protein sequence of NO05G03340.1

>NO05G03340.1-protein ID=NO05G03340.1-protein|Name=NO05G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MPMEEEKWRRLNVQSRGGTKLGASPITHHNHHHHPFFHHKHTSSPFSSST
FPSMAASPHLCRTPLGSPAPIYNSSSASSSANATPRRLRSGSIGLSGLGA
STTSTSSSSSSSSSSLLLPSKSAYVGVFRHAPATRGFKDLVWEPSFSTGR
PSLTQMDLARQERFRTRHVGLSELVQLPSTVYKELIARRRRERLERESGM
GVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTP
WDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPS
LSVLLKEGEVKSREEGGKGNEEGNGGEGCGSRGQAPKSFLENIYEIPRMA
FMRVGNSLMQQTSSSSSSSSRV*
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Synonyms
Publications