|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:876293..877701 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03340.1 vs.
Match: EWM28077.1 (Zinc finger, RING-type [Nannochloropsis gaditana]) HSP 1 Score: 240.4 bits (612), Expect = 9.300e-60 Identity = 136/258 (52.71%), Postives = 163/258 (63.18%), Query Frame = 0
Query: 106 SSSSSSSSSSLLLPSKSAYVGVFRHAPATRGFKDLVWEPSFSTGRPSLTQ---MDLARQERFRTRHVGLSELVQLPSTVYKELIARRRRERLERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPSLSVLLKEGEVKSREEGGKGNEEGNGGEGCGSRGQAPKSFLENIYEIPRMAFMRVGNSLMQ 361
SS S+SS L S + F P + P FS+ S + MD+ARQERF+TRHVG EL+QLP+T+YKEL+ RRRRERL+RE G+ V++DE+ EEA FV E E +G + WE +E G RHLCVICLEGFTPWD VRELPAC HIHHQRCLD+WLRGAASYEAC+TRSCPTCKTPI F S + EE G + +P+S L NI+EIPR A+ R GNSLMQ
Sbjct: 126 SSPFSNSSVRLAAGSPHSCRAPFSSPPPSL-------HPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEA-AFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKT--------DTVSSPRSILSNIFEIPRWAYARAGNSLMQ 367
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03340.1 ID=NO05G03340.1|Name=NO05G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
ACATCAAAGGCATTGTCGACAGCCTTTTTGGGATCATGCCTATGGAAGAG
GAGAAATGGCGGAGGTTGAACGTACAGAGCCGCGGAGGCACCAAGCTCGG
GGCTTCACCTATAACACACCACAACCATCACCACCACCCTTTCTTCCACC
ACAAGCATACATCGTCGCCGTTTAGTAGCAGTACTTTCCCTTCCATGGCA
GCCTCGCCGCACCTGTGCCGTACACCACTTGGCTCACCTGCGCCCATCTA
CAATTCATCCTCTGCCTCCTCCTCCGCCAATGCCACCCCCCGCCGCCTTC
GAAGCGGAAGCATCGGCTTGAGCGGCCTCGGCGCCTCCACGACCTCCACC
TCTTCCTCCTCATCTTCCTCTTCCTCCTCCCTTCTTCTTCCGAGCAAAAG
CGCATACGTTGGCGTCTTTCGCCATGCACCTGCCACGCGTGGTTTTAAGG
ACTTGGTTTGGGAGCCATCTTTCTCTACGGGCCGTCCGTCTCTGACTCAG
ATGGACCTAGCGCGTCAAGAAAGGTTTAGGACGCGGCATGTTGGCCTCTC
TGAGTTGGTACAGCTTCCGTCTACGGTGTATAAGGAGTTGATTGCCCGCC
GTCGTCGCGAGCGGTTGGAGAGAGAATCGGGAATGGGGGTCCTGGTGGAT
GAGGAGGCCGAGGAGGCCTACTTTGTGATGGACGAAGAGGAAGGGTTTCG
GGTGCAGGGAGGAGATGAGTGGGAGGTGGAGGAAGGGGAAGGCGGGCGGC
ACCTGTGTGTGATTTGCTTGGAGGGATTTACACCGTGGGATGTGGTCAGA
GAATTACCTGCTTGCCAACACATTCACCATCAACGGTGTCTAGATGTTTG
GTTGAGGGGAGCAGCGTCCTATGAGGCATGCTATACCCGGAGTTGTCCGA
CGTGTAAGACCCCTATTGACTTCTTTCCTCCCTCCCTTTCTGTTTTGCTC
AAGGAGGGGGAGGTCAAGAGCAGGGAGGAGGGAGGGAAAGGAAATGAGGA
GGGAAATGGAGGAGAGGGATGCGGCAGCAGAGGGCAGGCGCCGAAGTCTT
TTTTGGAGAATATTTACGAGATACCCAGGATGGCTTTTATGAGGGTGGGC
AACTCGCTTATGCAGCAGACTAGCAGCAGCAGCAGCAGCAGCAGCAGAGT
ATAA back to topprotein sequence of NO05G03340.1 >NO05G03340.1-protein ID=NO05G03340.1-protein|Name=NO05G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MPMEEEKWRRLNVQSRGGTKLGASPITHHNHHHHPFFHHKHTSSPFSSST
FPSMAASPHLCRTPLGSPAPIYNSSSASSSANATPRRLRSGSIGLSGLGA
STTSTSSSSSSSSSSLLLPSKSAYVGVFRHAPATRGFKDLVWEPSFSTGR
PSLTQMDLARQERFRTRHVGLSELVQLPSTVYKELIARRRRERLERESGM
GVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTP
WDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPS
LSVLLKEGEVKSREEGGKGNEEGNGGEGCGSRGQAPKSFLENIYEIPRMA
FMRVGNSLMQQTSSSSSSSSRV* back to topmRNA from alignment at chr5:876293..877701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03340.1 ID=NO05G03340.1|Name=NO05G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at chr5:876293..877701- (Nannochloropsis oceanica)
ACATCAAAGGCATTGTCGACAGCCTTTTTGGGATCATGCCTATGGAAGAG
GAGAAATGGCGGAGGTTGAACGTACAGAGCCGCGGAGGCACCAAGCTCGG
GGCTTCACCTATAACACACCACAACCATCACCACCACCCTTTCTTCCACC
ACAAGCATACATCGTCGCCGTTTAGTAGCAGTACTTTCCCTTCCATGGCA
GCCTCGCCGCACCTGTGCCGGTAAGTAGGGCGTAGATTAGACTAGACTGT
GGATGTTCTGTTAGGCGGGAGGAAGGGGGCGCTCTACATTCCCCTATCTG
ATAGATCCCTGCTCTTGACTCAAAAAGCTCCAATTGCAACATACCATCTA
CCATGGCCTCAACGGCGGTGGTAGGGTTCAATTGACAGGCGTCCTATATT
TTCAGTATTGAACATCATGCAACCTCTCCACACCATGTCACCGTAACTCC
TCACCTTCCTTTCCCTCCCTTCCAGTACACCACTTGGCTCACCTGCGCCC
ATCTACAATTCATCCTCTGCCTCCTCCTCCGCCAATGCCACCCCCCGCCG
CCTTCGAAGCGGAAGCATCGGCTTGAGCGGCCTCGGCGCCTCCACGACCT
CCACCTCTTCCTCCTCATCTTCCTCTTCCTCCTCCCTTCTTCTTCCGAGC
AAAAGCGCATACGTTGGCGTCTTTCGCCATGCACCTGCCACGCGTGGTTT
TAAGGACTTGGTTTGGGAGCCATCTTTCTCTACGGGCCGTCCGTCTCTGA
CTCAGATGGACCTAGCGCGTCAAGAAAGGTTTAGGACGCGGCATGTTGGC
CTCTCTGAGTTGGTACAGCTTCCGTCTACGGTGTATAAGGAGTTGATTGC
CCGCCGTCGTCGCGAGCGGTTGGAGAGAGAATCGGGAATGGGGGTCCTGG
TGGATGAGGAGGCCGAGGAGGCCTACTTTGTGATGGACGAAGAGGAAGGG
TTTCGGGTGCAGGGAGGAGATGAGTGGGAGGTGGAGGAAGGGGAAGGCGG
GCGGCACCTGTGTGTGATTTGCTTGGAGGGATTTACACCGTGGGATGTGG
TCAGAGAATTACCTGCTTGCCAACACATTCACCATCAACGGTGTCTAGAT
GTTTGGTTGAGGGGAGCAGCGTCCTATGAGGCATGCTATACCCGGAGTTG
TCCGACGTGTAAGACCCCTATTGACTTCTTTCCTCCCTCCCTTTCTGTTT
TGCTCAAGGAGGGGGAGGTCAAGAGCAGGGAGGAGGGAGGGAAAGGAAAT
GAGGAGGGAAATGGAGGAGAGGGATGCGGCAGCAGAGGGCAGGCGCCGAA
GTCTTTTTTGGAGAATATTTACGAGATACCCAGGATGGCTTTTATGAGGG
TGGGCAACTCGCTTATGCAGCAGACTAGCAGCAGCAGCAGCAGCAGCAGC
AGAGTATAA back to topCoding sequence (CDS) from alignment at chr5:876293..877701- >NO05G03340.1 ID=NO05G03340.1|Name=NO05G03340.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr5:876293..877701- (Nannochloropsis oceanica)
ATGCCTATGGAAGAGGAGAAATGGCGGAGGTTGAACGTACAGAGCCGCGG
AGGCACCAAGCTCGGGGCTTCACCTATAACACACCACAACCATCACCACC
ACCCTTTCTTCCACCACAAGCATACATCGTCGCCGTTTAGTAGCAGTACT
TTCCCTTCCATGGCAGCCTCGCCGCACCTGTGCCGTACACCACTTGGCTC
ACCTGCGCCCATCTACAATTCATCCTCTGCCTCCTCCTCCGCCAATGCCA
CCCCCCGCCGCCTTCGAAGCGGAAGCATCGGCTTGAGCGGCCTCGGCGCC
TCCACGACCTCCACCTCTTCCTCCTCATCTTCCTCTTCCTCCTCCCTTCT
TCTTCCGAGCAAAAGCGCATACGTTGGCGTCTTTCGCCATGCACCTGCCA
CGCGTGGTTTTAAGGACTTGGTTTGGGAGCCATCTTTCTCTACGGGCCGT
CCGTCTCTGACTCAGATGGACCTAGCGCGTCAAGAAAGGTTTAGGACGCG
GCATGTTGGCCTCTCTGAGTTGGTACAGCTTCCGTCTACGGTGTATAAGG
AGTTGATTGCCCGCCGTCGTCGCGAGCGGTTGGAGAGAGAATCGGGAATG
GGGGTCCTGGTGGATGAGGAGGCCGAGGAGGCCTACTTTGTGATGGACGA
AGAGGAAGGGTTTCGGGTGCAGGGAGGAGATGAGTGGGAGGTGGAGGAAG
GGGAAGGCGGGCGGCACCTGTGTGTGATTTGCTTGGAGGGATTTACACCG
TGGGATGTGGTCAGAGAATTACCTGCTTGCCAACACATTCACCATCAACG
GTGTCTAGATGTTTGGTTGAGGGGAGCAGCGTCCTATGAGGCATGCTATA
CCCGGAGTTGTCCGACGTGTAAGACCCCTATTGACTTCTTTCCTCCCTCC
CTTTCTGTTTTGCTCAAGGAGGGGGAGGTCAAGAGCAGGGAGGAGGGAGG
GAAAGGAAATGAGGAGGGAAATGGAGGAGAGGGATGCGGCAGCAGAGGGC
AGGCGCCGAAGTCTTTTTTGGAGAATATTTACGAGATACCCAGGATGGCT
TTTATGAGGGTGGGCAACTCGCTTATGCAGCAGACTAGCAGCAGCAGCAG
CAGCAGCAGCAGAGTATAA back to top
|