NO05G03270, NO05G03270 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G03270
Unique Name	NO05G03270
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1434
Alignment location	chr5:850204..851637 +

Link to JBrowse

Properties


Property Name	Value
Description	Ubiquitin family protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:850204..851637 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-rel_dom
IPR000626	Ubiquitin-like
IPR019956	Ubiquitin

Homology

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: EWM28075.1 (ubiquitin family protein [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 2.200e-46
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 0

Query:    1 MVSRSSKSK--SLQVLVMLVLASLIHTSSAAMGMSPGLFCTV----RGGTQQPSAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFGR 141
            M SR ++ +  S   LV ++L  + H++ AA+G+SP L CTV    RG  +Q  AFQR MSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW + R
Sbjct:    1 MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRL-CTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR 145

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: GAX17099.1 (hypothetical protein FisN_5Hu485 [Fistulifera solaris])

HSP 1 Score: 135.2 bits (339), Expect = 1.600e-28
Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 0

Query:   53 LMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFGR 141
            ++ +RGGMQ+ VKTL GKT+SV+VEEG+SI+EVKAKIAEKEGIPP+QQRLIFGG+QL   K+L DYD+GDD+TLHLVLRLRGG   G+
Sbjct:   37 VLGMRGGMQLFVKTLTGKTVSVEVEEGESIEEVKAKIAEKEGIPPEQQRLIFGGQQLQDGKTLGDYDVGDDATLHLVLRLRGGSILGK 124

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: XP_002178822.1 (ubiquitin-like protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49520.1 ubiquitin-like protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 134.8 bits (338), Expect = 2.100e-28
Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 0

Query:   48 SAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 136
            +A   ++SVRGGMQ+ VKTL GKT+S++VEEG+SI+EVKAKIAEKEGIP +QQRLIFGG+QL   K+L DYD+GDD+TLHLVLRLRGG
Sbjct:   33 TALASVLSVRGGMQLFVKTLTGKTVSIEVEEGESIEEVKAKIAEKEGIPAEQQRLIFGGQQLQDAKTLDDYDVGDDATLHLVLRLRGG 120

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: EJK55364.1 (hypothetical protein THAOC_24909 [Thalassiosira oceanica])

HSP 1 Score: 131.3 bits (329), Expect = 2.300e-27
Identity = 62/89 (69.66%), Postives = 78/89 (87.64%), Query Frame = 0

Query:   47 PSAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 136
            PSA Q  + +RGGMQ+ VKTL GKT+S++VEEG+SI++VKAKIAEKEGIP +QQR+IFGG+QL   K++ DY+IGDD+TLHLVLRLRGG
Sbjct:   39 PSALQTALHLRGGMQLFVKTLTGKTVSIEVEEGESIEDVKAKIAEKEGIPAEQQRIIFGGQQLQDGKTVDDYNIGDDATLHLVLRLRGG 127

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: OEU12432.1 (ubiquitin-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 127.1 bits (318), Expect = 4.300e-26
Identity = 59/83 (71.08%), Postives = 75/83 (90.36%), Query Frame = 0

Query:   53 LMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 136
            ++ +RGGMQ+ VKTL GKT+S++VEEG+SI++VKAKIAEKEGIP +QQRLIFGG+QL   K++ DYD+GDD+TLHLVLRLRGG
Sbjct:  125 VLRLRGGMQLFVKTLTGKTVSIEVEEGESIEDVKAKIAEKEGIPVEQQRLIFGGQQLQDSKTIDDYDMGDDATLHLVLRLRGG 207

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: BAT25226.1 (symbiotic ubiquitin [Nitzschia sp. IriIs04])

HSP 1 Score: 126.7 bits (317), Expect = 5.600e-26
Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 0

Query:   11 LQVLVMLVLASLIHTSSAAMGMSPGLFCTVRGGTQQPSAFQRLMSV-RGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 136
            L  L+ L+   L  T +   G+ P     V+   + PS  + + +V RGGMQ+ VKTL GKT+SV+VEEG+SI++VKAKIAEKEGIPP+QQRLIFGG+QL   K+L DY++GDD+TLHLVLRLRGG
Sbjct:    3 LYFLLCLLYTGLSWTHAVGFGV-PRSLPFVKSFEESPS--RSIWAVPRGGMQLFVKTLTGKTVSVEVEEGESIEDVKAKIAEKEGIPPEQQRLIFGGQQLQDGKTLDDYNVGDDATLHLVLRLRGG 125

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: POE74530.1 (polyubiquitin [Quercus suber])

HSP 1 Score: 125.9 bits (315), Expect = 9.600e-26
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 0

Query:   45 QQPSAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFG 140
            Q+ S    ++ +RGGMQI VKTL GKTI+++VE  D+ID VK+KI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGG AFG
Sbjct:  190 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGHAFG 284

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: ACR78239.1 (ubiquitin-like protein, partial [Fistulifera pelliculosa])

HSP 1 Score: 125.2 bits (313), Expect = 1.600e-25
Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 0

Query:   60 MQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 136
            MQ+ VKTL GKT+SV+VEEG+SI+EVKAKIAEKEGIPP+QQRLIFGG+QL   K+L DYD+GDD+TLHLVLRLRGG
Sbjct:    1 MQLFVKTLTGKTVSVEVEEGESIEEVKAKIAEKEGIPPEQQRLIFGGQQLQDGKTLGDYDVGDDATLHLVLRLRGG 76

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: XP_002553736.1 (KLTH0E05852p [Lachancea thermotolerans CBS 6340] >CAR23299.1 KLTH0E05852p [Lachancea thermotolerans CBS 6340])

HSP 1 Score: 124.4 bits (311), Expect = 2.800e-25
Identity = 60/92 (65.22%), Postives = 75/92 (81.52%), Query Frame = 0

Query:   45 QQPSAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW 137
            Q+ S    ++ +RGGMQI VKTL GKTI+++VE  D+ID VK+KI +KEGIPPDQQRLIF GKQL+  ++LSDY+I  +STLHLVLRLRGGW
Sbjct:  318 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGW 409

[Close]

BLAST of NO05G03270 vs. NCBI_GenBank
Match: AFV28810.1 (polyubiquitin, partial (macronuclear) [Euplotes rariseta])

HSP 1 Score: 123.6 bits (309), Expect = 4.800e-25
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 0

Query:   45 QQPSAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGG 136
            Q+ S    ++ +RGGMQI VKTL GKTI++DVE+ D+ID VK KI +KEGIPPDQQRLIF GKQLD  ++LSDY+I  +STLHLVLRLRGG
Sbjct:   62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLDDGRTLSDYNIQKESTLHLVLRLRGG 152

The following BLAST results are available for this feature:

BLAST of NO05G03270 vs. NCBI_GenBank

BLAST of NO05G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28075.1	2.200e-46	73.97	ubiquitin family protein [Nannochloropsis gaditana...	[more]
GAX17099.1	1.600e-28	72.73	hypothetical protein FisN_5Hu485 [Fistulifera sola...	[more]
XP_002178822.1	2.100e-28	72.73	ubiquitin-like protein [Phaeodactylum tricornutum ...	[more]
EJK55364.1	2.300e-27	69.66	hypothetical protein THAOC_24909 [Thalassiosira oc...	[more]
OEU12432.1	4.300e-26	71.08	ubiquitin-domain-containing protein [Fragilariopsi...	[more]
BAT25226.1	5.600e-26	57.14	symbiotic ubiquitin [Nitzschia sp. IriIs04]	[more]
POE74530.1	9.600e-26	65.26	polyubiquitin [Quercus suber]	[more]
ACR78239.1	1.600e-25	78.95	ubiquitin-like protein, partial [Fistulifera pelli...	[more]
XP_002553736.1	2.800e-25	65.22	KLTH0E05852p [Lachancea thermotolerans CBS 6340] >...	[more]
AFV28810.1	4.800e-25	67.03	polyubiquitin, partial (macronuclear) [Euplotes ra...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL085	nonsL085	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003537	NSK003537	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G03270.1	NO05G03270.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584687	gene_3135	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100044g34	gene2491	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G03270.1	NO05G03270.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G03270 ID=NO05G03270|Name=NO05G03270|organism=Nannochloropsis oceanica|type=gene|length=1434bp
ATTCAACTGTATGGTATGAATATGAACGAGGAGTTTGTGAGTGTGTTTGA
AGGGCAGGGGTGAAGCCGCTTAGAACAAATAGCACTAGTAGTTGATGGGG
CATATGATGACGATTGGAGCCTGAGGGCGGGCTTTGCCTTGCCACCGGAG
GCCACAAAAGCGACATGCACAACCCTTTAATCAACACCAGCACTCAAATC
CCTCCATCCTCTTCCTACGCACATCCGTAGACCTCTTCGTTCGCTTCAAC
GCAAGCCACCATGGTCTCAAGAAGCAGTAAGTCCAAAAGCCTCCAGGTCC
TGGTGATGCTGGTCCTCGCCTCCCTTATCCACACGTCCTCAGCCGCCATG
GGCATGTCCCCGGGCCTGTTTTGCACCGTCCGTGGTGGAACACAACAGCC
ATCCGCCTTTCAACGCCTCATGAGCGTCCGGGGTGGCATGCAGgtacgtc
atgtgccttgttgggtggattggagaggaggaaaagggagggaggacggg
gctggggcaagggatgggctggggcagacccggttgagagtgtatgcgga
gagtaagcaaatggctgtgtacatcaacacattatcttaggtcatgtgat
gatgaccagggagggttgtggttggctccgcgggacgcaggctcaggatc
agtgcacatttggtatggcatcatcacatgcaacatacgagagaaaggca
catatggatctgaatggaggaaattctgcgcggcaggttaagaactcaaa
acgtggctgctgtggtctgtttcacaccccacttcgcatccatcgatgac
cttttgaacccttagaatccttgtcttccacgtccacccatatgccccgt
ccctcctatctcaacccctccccctccttctctctccccttgccccatag
ATTAATGTCAAGACTCTGAACGGTAAGACCATTTCGGTGGATGTGGAAGA
GGGTGATAGCATTGATGAAGTCAAGGCCAAAATTGCTGAGAAGGAGGGAA
TCCCCCCTGACCAGCAACGTCTTATTTTTGGGGGAAAACAGCTGGATGGG
CTGAAAAGCCTATCTGATTATGATATTGGTGACGATTCAACGTTGCATTT
GGTGTTGCGATTGCGTGGGGGATGGGCATTTGGACGGTGAAGAGAAGGGG
GATTGCTTTGCACATACGTGTTCGTGAGAGGTAGTGGAGGACCAGCCGGG
TGAAATAAGAAAACGAGAAAAAGAAGAAACGAAGAAACAAAGAAATAAAA
CAGACAAGGCGCAAGAGAAAAAGAGAAAAAGAGAGAGATCGGCGGTGAAA
TGTTACGGAGAGTAAAAGTGTGCATGTGAAAGCACTCGGACAAGCATTCC
TCCTTCGACATTTTCTTCATTTTTAATCGCGTGTGAGTGCATGTTGCGTT
GTGCACTGCAAACGTCAAAATAAATTGGGACCCC

protein sequence of NO05G03270.1

>NO05G03270.1-protein ID=NO05G03270.1-protein|Name=NO05G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MVSRSSKSKSLQVLVMLVLASLIHTSSAAMGMSPGLFCTVRGGTQQPSAF
QRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQ
RLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFGR*

Synonyms

Publications