NO05G03270.1, NO05G03270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03270.1
Unique NameNO05G03270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length977
Alignment locationchr5:850204..851637 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:850204..851637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03270.1 vs.
Match: EWM28075.1 (ubiquitin family protein [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 2.200e-46
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 0 
Query:    1 MVSRSSKSK--SLQVLVMLVLASLIHTSSAAMGMSPGLFCTV----RGGTQQPSAFQRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFGR 141
            M SR ++ +  S   LV ++L  + H++ AA+G+SP L CTV    RG  +Q  AFQR MSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGW + R
Sbjct:    1 MASRPNRIRCSSPLALVTVILVCIAHSTWAAIGISPRL-CTVTPFQRGNGRQSPAFQRFMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQRLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWPWVR 145
The following BLAST results are available for this feature:
BLAST of NO05G03270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28075.12.200e-4673.97ubiquitin family protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03270NO05G03270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03270.1NO05G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03270.1.cds1NO05G03270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03270.1.cds2NO05G03270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03270.1 ID=NO05G03270.1|Name=NO05G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=977bp
ATTCAACTGTATGGTATGAATATGAACGAGGAGTTTGTGAGTGTGTTTGA
AGGGCAGGGGTGAAGCCGCTTAGAACAAATAGCACTAGTAGTTGATGGGG
CATATGATGACGATTGGAGCCTGAGGGCGGGCTTTGCCTTGCCACCGGAG
GCCACAAAAGCGACATGCACAACCCTTTAATCAACACCAGCACTCAAATC
CCTCCATCCTCTTCCTACGCACATCCGTAGACCTCTTCGTTCGCTTCAAC
GCAAGCCACCATGGTCTCAAGAAGCAGTAAGTCCAAAAGCCTCCAGGTCC
TGGTGATGCTGGTCCTCGCCTCCCTTATCCACACGTCCTCAGCCGCCATG
GGCATGTCCCCGGGCCTGTTTTGCACCGTCCGTGGTGGAACACAACAGCC
ATCCGCCTTTCAACGCCTCATGAGCGTCCGGGGTGGCATGCAGATTAATG
TCAAGACTCTGAACGGTAAGACCATTTCGGTGGATGTGGAAGAGGGTGAT
AGCATTGATGAAGTCAAGGCCAAAATTGCTGAGAAGGAGGGAATCCCCCC
TGACCAGCAACGTCTTATTTTTGGGGGAAAACAGCTGGATGGGCTGAAAA
GCCTATCTGATTATGATATTGGTGACGATTCAACGTTGCATTTGGTGTTG
CGATTGCGTGGGGGATGGGCATTTGGACGGTGAAGAGAAGGGGGATTGCT
TTGCACATACGTGTTCGTGAGAGGTAGTGGAGGACCAGCCGGGTGAAATA
AGAAAACGAGAAAAAGAAGAAACGAAGAAACAAAGAAATAAAACAGACAA
GGCGCAAGAGAAAAAGAGAAAAAGAGAGAGATCGGCGGTGAAATGTTACG
GAGAGTAAAAGTGTGCATGTGAAAGCACTCGGACAAGCATTCCTCCTTCG
ACATTTTCTTCATTTTTAATCGCGTGTGAGTGCATGTTGCGTTGTGCACT
GCAAACGTCAAAATAAATTGGGACCCC
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protein sequence of NO05G03270.1

>NO05G03270.1-protein ID=NO05G03270.1-protein|Name=NO05G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MVSRSSKSKSLQVLVMLVLASLIHTSSAAMGMSPGLFCTVRGGTQQPSAF
QRLMSVRGGMQINVKTLNGKTISVDVEEGDSIDEVKAKIAEKEGIPPDQQ
RLIFGGKQLDGLKSLSDYDIGDDSTLHLVLRLRGGWAFGR*
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mRNA from alignment at chr5:850204..851637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03270.1 ID=NO05G03270.1|Name=NO05G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at chr5:850204..851637+ (Nannochloropsis oceanica)
ATTCAACTGTATGGTATGAATATGAACGAGGAGTTTGTGAGTGTGTTTGA
AGGGCAGGGGTGAAGCCGCTTAGAACAAATAGCACTAGTAGTTGATGGGG
CATATGATGACGATTGGAGCCTGAGGGCGGGCTTTGCCTTGCCACCGGAG
GCCACAAAAGCGACATGCACAACCCTTTAATCAACACCAGCACTCAAATC
CCTCCATCCTCTTCCTACGCACATCCGTAGACCTCTTCGTTCGCTTCAAC
GCAAGCCACCATGGTCTCAAGAAGCAGTAAGTCCAAAAGCCTCCAGGTCC
TGGTGATGCTGGTCCTCGCCTCCCTTATCCACACGTCCTCAGCCGCCATG
GGCATGTCCCCGGGCCTGTTTTGCACCGTCCGTGGTGGAACACAACAGCC
ATCCGCCTTTCAACGCCTCATGAGCGTCCGGGGTGGCATGCAGGTACGTC
ATGTGCCTTGTTGGGTGGATTGGAGAGGAGGAAAAGGGAGGGAGGACGGG
GCTGGGGCAAGGGATGGGCTGGGGCAGACCCGGTTGAGAGTGTATGCGGA
GAGTAAGCAAATGGCTGTGTACATCAACACATTATCTTAGGTCATGTGAT
GATGACCAGGGAGGGTTGTGGTTGGCTCCGCGGGACGCAGGCTCAGGATC
AGTGCACATTTGGTATGGCATCATCACATGCAACATACGAGAGAAAGGCA
CATATGGATCTGAATGGAGGAAATTCTGCGCGGCAGGTTAAGAACTCAAA
ACGTGGCTGCTGTGGTCTGTTTCACACCCCACTTCGCATCCATCGATGAC
CTTTTGAACCCTTAGAATCCTTGTCTTCCACGTCCACCCATATGCCCCGT
CCCTCCTATCTCAACCCCTCCCCCTCCTTCTCTCTCCCCTTGCCCCATAG
ATTAATGTCAAGACTCTGAACGGTAAGACCATTTCGGTGGATGTGGAAGA
GGGTGATAGCATTGATGAAGTCAAGGCCAAAATTGCTGAGAAGGAGGGAA
TCCCCCCTGACCAGCAACGTCTTATTTTTGGGGGAAAACAGCTGGATGGG
CTGAAAAGCCTATCTGATTATGATATTGGTGACGATTCAACGTTGCATTT
GGTGTTGCGATTGCGTGGGGGATGGGCATTTGGACGGTGAAGAGAAGGGG
GATTGCTTTGCACATACGTGTTCGTGAGAGGTAGTGGAGGACCAGCCGGG
TGAAATAAGAAAACGAGAAAAAGAAGAAACGAAGAAACAAAGAAATAAAA
CAGACAAGGCGCAAGAGAAAAAGAGAAAAAGAGAGAGATCGGCGGTGAAA
TGTTACGGAGAGTAAAAGTGTGCATGTGAAAGCACTCGGACAAGCATTCC
TCCTTCGACATTTTCTTCATTTTTAATCGCGTGTGAGTGCATGTTGCGTT
GTGCACTGCAAACGTCAAAATAAATTGGGACCCC
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Coding sequence (CDS) from alignment at chr5:850204..851637+

>NO05G03270.1 ID=NO05G03270.1|Name=NO05G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr5:850204..851637+ (Nannochloropsis oceanica)
ATGGTCTCAAGAAGCAGTAAGTCCAAAAGCCTCCAGGTCCTGGTGATGCT
GGTCCTCGCCTCCCTTATCCACACGTCCTCAGCCGCCATGGGCATGTCCC
CGGGCCTGTTTTGCACCGTCCGTGGTGGAACACAACAGCCATCCGCCTTT
CAACGCCTCATGAGCGTCCGGGGTGGCATGCAGATTAATGTCAAGACTCT
GAACGGTAAGACCATTTCGGTGGATGTGGAAGAGGGTGATAGCATTGATG
AAGTCAAGGCCAAAATTGCTGAGAAGGAGGGAATCCCCCCTGACCAGCAA
CGTCTTATTTTTGGGGGAAAACAGCTGGATGGGCTGAAAAGCCTATCTGA
TTATGATATTGGTGACGATTCAACGTTGCATTTGGTGTTGCGATTGCGTG
GGGGATGGGCATTTGGACGGTGA
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Synonyms
Publications