NO05G03240, NO05G03240 (gene) Nannochloropsis oceanica

Overview
NameNO05G03240
Unique NameNO05G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2650
Alignment locationchr5:842106..844755 +

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Properties
Property NameValue
DescriptionVacuolar iron family transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:842106..844755 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008217Ccc1_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO05G03240 vs. NCBI_GenBank
Match: EWM28095.1 (vacuolar iron family transporter [Nannochloropsis gaditana])

HSP 1 Score: 498.0 bits (1281), Expect = 2.000e-137
Identity = 263/296 (88.85%), Postives = 276/296 (93.24%), Query Frame = 0
Query:    1 MELPGQMXXXXXXXXXXXGFHATEKTCLVQAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGE 297
            ME+   M XXXXXXXXXXG H TEKT LVQ AQHAYRLND+EASRLIH+QKFEAK HDE   +VGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFV KEKERESWELQNFREGEIKEMIDIYVERGME DDAEDVVRKMSKYD+FFVNVMMVEELGLQVPDP+DDIVKEGVVMFL+FAGFGAMPLLGYALIPLCFP  GP  LFN+AC VTALTLF+MGAVKSKFSTRGWLHSG+EMLVLGG+CA+MAYEIGHLVSSLVG G+
Sbjct:    1 MEIHTHMNXXXXXXXXXXGIHPTEKTSLVQQAQHAYRLNDVEASRLIHQQKFEAKTHDEXXXSVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVFKEKERESWELQNFREGEIKEMIDIYVERGMEPDDAEDVVRKMSKYDDFFVNVMMVEELGLQVPDPNDDIVKEGVVMFLSFAGFGAMPLLGYALIPLCFPSLGPSHLFNIACGVTALTLFIMGAVKSKFSTRGWLHSGLEMLVLGGICAVMAYEIGHLVSSLVGAGD 296          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: CBN73842.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 333.2 bits (853), Expect = 8.400e-88
Identity = 173/262 (66.03%), Postives = 206/262 (78.63%), Query Frame = 0
Query:   33 QHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVP-DPDDDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVG 294
            ++A+   D +ASRL+H+ +   + HDE H   GDY+K+M+FGGLDGILTSFAIVAGAAGG LPV VV+VLGFSNIFADA SMG+GEYLSSKAHNE+V+ EK RE WEL+N REGEI EM++I+ ERGM   DAEDV+ KM+KYD+FFVN+MM EELGLQVP   DDD VKEG VMFL+FA FGAMPLLGY ++PL  P   P  LF VAC+VTA +LF MGA+KS+F TR W  SG EML LGG CA +A+EIG  V  L+G
Sbjct:   27 RNAFMTGDQQASRLLHDAR-AGQAHDEAHSEKGDYLKAMVFGGLDGILTSFAIVAGAAGGHLPVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVMAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFVNLMMNEELGLQVPTGDDDDTVKEGFVMFLSFAFFGAMPLLGYVIVPLIKPDSSPAILFFVACLVTAASLFGMGAIKSQFGTRHWCTSGTEMLFLGGSCAALAFEIGKAVDGLIG 287          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: OEU20743.1 (vacuolar Fe2+/Mn2+ uptake transporter-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 294.3 bits (752), Expect = 4.300e-76
Identity = 153/269 (56.88%), Postives = 200/269 (74.35%), Query Frame = 0
Query:   32 AQHAYRLNDIEASRLIHEQKF------EAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPD--DDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLV 293
            A+ AY   + +ASR  HE K       E  + +  H + G  ++ +IFGGLDGILTSFAIVAGAAGGG+PV  V+VLGFSNIFADA SMG+GE+LSSKA+NE++L E+ERE WE+QNFREGEI+EMIDIYV +G+  +DA  V++ M+KY++FFV++MM +EL LQVP+ +  +  +KEG VMF +FA FGAMPLLGY +IPL FP   P  LF  AC+VTAL LF++G++KS FS   W  SG+E L+LGG CA +A+ IG  V+ L+
Sbjct:    1 ARLAYESGNTDASRRYHETKTAVADGPEHTDEEPWHQSSGGLLQPVIFGGLDGILTSFAIVAGAAGGGIPVSAVLVLGFSNIFADALSMGVGEFLSSKANNEWILSEREREEWEMQNFREGEIQEMIDIYVNKGLTLEDATIVIKTMAKYEDFFVDIMMQQELELQVPESNHVEQSMKEGFVMFCSFAFFGAMPLLGYVIIPLLFPDLEPTYLFKSACVVTALVLFLLGSIKSNFSRSNWFLSGLETLLLGGTCATVAFVIGSFVNGLL 269          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: XP_002287480.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94923.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 292.4 bits (747), Expect = 1.600e-75
Identity = 157/272 (57.72%), Postives = 192/272 (70.59%), Query Frame = 0
Query:   24 EKTCLV-QAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDI--VKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLV 293
            E T LV   A+ AY   D EAS+  H+++       E H   G  +K +IFGGLDGILT+FAIVAGAAGG +P+ V++VLGFSNIFADA +MG+GE+LSSKA NE++L E+ RE+WE++N+ EGEI EMIDIY ERGM  DDA+ V+  M+KY  FFV+VMM EEL LQVPD D  I  +KEGVVMF AFA FG++PLLGY +IP  FP  G   LF  ACIVT + LF MG VKS FS   W   G+E L+LGG CA +AY IG  V  L+
Sbjct:    6 ESTSLVPDGARKAYDGLDTEASKSFHDKRHNTSG-VEMHQTEGGMLKPLIFGGLDGILTAFAIVAGAAGGSMPIPVILVLGFSNIFADALAMGVGEFLSSKAENEWILSERRRENWEMENYPEGEIAEMIDIYQERGMTHDDAKLVIETMAKYKEFFVDVMMAEELALQVPDEDHKIESMKEGVVMFGAFATFGSLPLLGYIVIPALFPSLGEDVLFTAACIVTGMVLFGMGCVKSIFSAANWFTCGLETLLLGGACATVAYTIGQFVDKLI 276          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: EJK53909.1 (hypothetical protein THAOC_26564 [Thalassiosira oceanica])

HSP 1 Score: 281.2 bits (718), Expect = 3.800e-72
Identity = 156/288 (54.17%), Postives = 197/288 (68.40%), Query Frame = 0
Query:   24 EKTCLV-QAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIK----------------EMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPD--DDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLV 293
            E T LV   A+ +Y   D  ASR  H+ +   +N +E H   G ++K +IFGGLDGILTSFAIVAGAAGG L V VV+VLGFSNI ADA +MG+GE+LSSKA NE++L E++RESWE++ + EGE +                EMIDIY ERGM  +DA  V+R MSKY  FFV+VMM EEL LQ+P+ +   + +KEGVVMF +FA FG++PLLGY +IP  FP  G   LF  +C+VTAL LF++G+VKS FS  GW  SG+EML LGG CA +AY IG  V  L+
Sbjct:    5 ESTSLVPNGARKSYVDRDGVASRKFHDTRHGQENIEE-HQEEGGFLKPLIFGGLDGILTSFAIVAGAAGGQLSVPVVLVLGFSNILADALAMGVGEFLSSKAENEWILSERKRESWEMETYPEGECRRRKCTTPENSYPSQHNEMIDIYTERGMSKEDATSVIRIMSKYKEFFVDVMMAEELALQIPEENHVTESMKEGVVMFFSFATFGSLPLLGYVIIPAMFPELGSDILFASSCVVTALVLFLLGSVKSFFSASGWFVSGLEMLFLGGCCATLAYTIGQFVEGLI 291          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: GAX12047.1 (hypothetical protein FisN_8Lh147 [Fistulifera solaris])

HSP 1 Score: 280.8 bits (717), Expect = 4.900e-72
Identity = 150/279 (53.76%), Postives = 196/279 (70.25%), Query Frame = 0
Query:   21 HATEKTCLVQAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPD--DDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGEV 298
            H  E+T L   A+ A++  +  ASR  HE +  A   +E H   G  +K +IFGGLDGILTSFAIVAGAAGG L   VV++LGFSNIFADA SMG+GE+LSSKA NE++L E+ RE WE +N+ EGEI+EMI+IY  RGM  +DA+ V+  M+KY +FFV+VMM +EL LQ P+ +   + ++EGVVMF +FA FGAMPLLGY +IP  FP      LF  AC++T + LF+MG+VKS FST+ W  +GME L LGG CA +A+ IG  + +  GV +V
Sbjct:    3 HDNERTPL--TARTAFQDKNAAASRQYHESRSSAVKSEEAHQQGGGMLKPIIFGGLDGILTSFAIVAGAAGGRLDPSVVLILGFSNIFADALSMGVGEFLSSKAENEWILSERRREEWEFENYPEGEIEEMIEIYESRGMSHEDAKLVINTMAKYKDFFVDVMMTQELELQPPEENYLQENLREGVVMFSSFATFGAMPLLGYVIIPSAFPDLSTDYLFACACLITGMVLFLMGSVKSFFSTQHWFRAGMETLSLGGACATVAFTIGQALQAHFGVSDV 279          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: GAX18929.1 (hypothetical protein FisN_8Hh147 [Fistulifera solaris])

HSP 1 Score: 280.4 bits (716), Expect = 6.400e-72
Identity = 150/281 (53.38%), Postives = 196/281 (69.75%), Query Frame = 0
Query:   19 GFHATEKTCLVQAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPD--DDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGEV 298
            G    E+T L   A+ A++  +  ASR  HE +  A   +E H   G  +K +IFGGLDGILTSFAIVAGAAGG L   VV++LGFSNIFADA SMG+GE+LSSKA NE++L E+ RE WE +N+ EGEI+EMI+IY  RGM  +DA+ V+  M+KY +FFV+VMM +EL LQ P+ +   +  +EGVVMF +FA FGAMPLLGY +IP  FP      LF  AC++T + LF+MG+VKS FST+ W  +GME L LGG CA +A+ IG ++ +  GV +V
Sbjct:    2 GHDHNERTPL--TARTAFQDKNAAASRQYHESRSSAVKSEEAHQQGGGMLKPIIFGGLDGILTSFAIVAGAAGGRLDPSVVLILGFSNIFADALSMGVGEFLSSKAENEWILSERRREEWEFENYPEGEIEEMIEIYESRGMSHEDAKLVINTMAKYKDFFVDVMMTQELELQPPEENYLQENFREGVVMFSSFAAFGAMPLLGYVIIPAAFPDLSTDYLFACACLITGMVLFLMGSVKSFFSTQHWFRAGMETLSLGGACATVAFTIGQVLQAHFGVSDV 280          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: XP_002178292.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49957.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 273.1 bits (697), Expect = 1.000e-69
Identity = 150/275 (54.55%), Postives = 196/275 (71.27%), Query Frame = 0
Query:   23 TEKTCLV--QAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDD--DIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVG 294
            +E T LV   AA+ A++  D + SR  H+ K  +   ++ H   G  +K +IFGGLDGILTSFAIVAGAAGG L  +VV++LG SNIFADA SMG+GE+LSSKA+NE++L E+ RE WEL+N+ EGEIKEM++I+ ++GM  +DA   +  M+KY +FFV++MM +EL LQVPD D   + +KEGVVMF +FA FGA+PLLGY L PL F       LF  ACIVT + LF MG+VKS FS + W  +GME L+LGG CA +A+ IG LV S+ G
Sbjct:    3 SEDTPLVAGSAARDAFQSADAKKSRQYHDAKSAS---EDGHQTEGGMLKPIIFGGLDGILTSFAIVAGAAGGELSPQVVLILGVSNIFADALSMGVGEFLSSKANNEWILSERAREEWELENYPEGEIKEMVEIFEDKGMSHEDAVSCINTMAKYKDFFVDIMMQQELELQVPDKDHIRESMKEGVVMFCSFAFFGALPLLGYVLFPLEFHDMSEGELFVSACIVTGMVLFFMGSVKSFFSNQQWFIAGMETLLLGGACATVAFTIGQLVKSVYG 274          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: GBG26876.1 (Vacuolar iron transporter 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 270.0 bits (689), Expect = 8.700e-69
Identity = 139/263 (52.85%), Postives = 190/263 (72.24%), Query Frame = 0
Query:   32 AQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGV 295
            A++A+   D E SR  H+ +   K+ +E H   GD++KS++FGGLDGILT+FAIV+GA GG L VE +++LG+S+  ADA SMG+G+ LSS+A +EFV+KE+ERE WE  NF EGE +EM+++Y  RGM   DA+ V+  MS++ +FFV+VMMVEELGLQVP  D++   EG V F +F  FG  PLLGY + P  FPH   +ALF +AC+ + LTLFV+GAVKS FST+ W  SG EML++G    ++AY IG + S++VGV
Sbjct:   23 ARNAWEKGDAELSRQAHQAE---KSPEEGHQTEGDFIKSIVFGGLDGILTTFAIVSGATGGSLGVEAILILGWSSKLADALSMGLGDALSSRAEHEFVMKEREREYWEFDNFPEGEKEEMMELYKMRGMTDSDAKLVIDLMSEHRDFFVDVMMVEELGLQVPTGDENPWLEGFVTFCSFIFFGFFPLLGYCIFPFAFPHISDEALFVIACVFSGLTLFVLGAVKSMFSTKSWYRSGFEMLLIGSGVCVVAYSIGAITSAVVGV 282          
BLAST of NO05G03240 vs. NCBI_GenBank
Match: XP_009035578.1 (hypothetical protein AURANDRAFT_24305 [Aureococcus anophagefferens] >EGB09514.1 hypothetical protein AURANDRAFT_24305 [Aureococcus anophagefferens])

HSP 1 Score: 247.3 bits (630), Expect = 6.000e-62
Identity = 137/265 (51.70%), Postives = 176/265 (66.42%), Query Frame = 0
Query:   30 QAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDD--DIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLV 293
            +AA  AY   D+E S   H ++  +  HDE H AVG  +K+++FGGLDGILT FAIV+  AG  +   VV++LG  NI ADA +MG+GEYLS+K+ +EF   E+ RE WE+++  EGEI EM+DIYV RGM  +DA  V+  M+KY +FFVNVMMVEELGL VP+P+   D +K+G +MFLAF  FGA PLLGYAL+P   P   P  LF  AC VT +TLF +GAVK+KF        G E L LG +CA  AY  G L+   +
Sbjct:   13 KAATAAYSALDVELSSKAHAER-ASGTHDEQHSAVGGRLKTIVFGGLDGILTCFAIVSSCAGSDMSPRVVLLLGACNILADALAMGVGEYLSTKSSDEFASYERTREDWEMRHNPEGEILEMVDIYVGRGMSREDATTVITTMAKYHDFFVNVMMVEELGLTVPEPEAHCDAMKDGFLMFLAFCVFGAFPLLGYALLPQFRPDAAPHELFLAACAVTGVTLFGLGAVKAKFVNGNPYKLGAETLALGALCASSAYSAGALLQQFL 276          
The following BLAST results are available for this feature:
BLAST of NO05G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28095.12.000e-13788.85vacuolar iron family transporter [Nannochloropsis ... [more]
CBN73842.18.400e-8866.03conserved unknown protein [Ectocarpus siliculosus][more]
OEU20743.14.300e-7656.88vacuolar Fe2+/Mn2+ uptake transporter-like protein... [more]
XP_002287480.11.600e-7557.72predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK53909.13.800e-7254.17hypothetical protein THAOC_26564 [Thalassiosira oc... [more]
GAX12047.14.900e-7253.76hypothetical protein FisN_8Lh147 [Fistulifera sola... [more]
GAX18929.16.400e-7253.38hypothetical protein FisN_8Hh147 [Fistulifera sola... [more]
XP_002178292.11.000e-6954.55predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GBG26876.18.700e-6952.85Vacuolar iron transporter 1 [Aurantiochytrium sp. ... [more]
XP_009035578.16.000e-6251.70hypothetical protein AURANDRAFT_24305 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003540NSK003540Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03240.1NO05G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584678gene_3132Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100120g3gene2487Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03240.1NO05G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03240 ID=NO05G03240|Name=NO05G03240|organism=Nannochloropsis oceanica|type=gene|length=2650bp
CTCGAAGTGTGTGTCCCCAGGGCACACCATGCCTGCATCAGCACAGTCGT
TCCACCTCTTTGCTGGTGGCTGCAACAGGTGAAATGTGTTTACGATGTTG
TCATTGGATAAGCCTAAACATCTGCTTGTTGGCAGCAAGCAAGATCATTC
TTCCACCACCTCACTAATCTCCCAATGCCCACACCTCAACCACCAGGACA
CAGCGCAACAAGGATTAGACCACGCCCATACGTCAGGAGTAGGTCGCTCA
ATAGGTTACTGCAGACACGGTAGGCGACCGCCTCTTTCTTGGTGCGCCGC
GGCTAGACAGCCTTACCACTGCCGTTGTCCCGGACGACGCCGGCAGCATT
TCCAACCCACACAACGACTCCCCGCACCACCATCATGGAGCTGCCCGGTC
AGATGGACGGTCACTCTAATGGGCACGCTAACGGAAATGGCTTTCATGCC
ACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGCATGCCTACCGACTAAA
TGATATCGAGGCTTCCCGgtacgtacaaccaaagaagagagcaggcgaat
agcaatgcacttgtgaatggggcggagatgaagggtacatgcgagtggat
acggatgtagataactgcagaggtgatgttattaatcattggttttcggc
ctcccgtctcgggtgcttttgctgaaaagtcccatgtaacacgaaccatt
ctggacgtgcgtcgacttcctgtcggcatgatgtccctcattgcccgcaa
tcccttcccctccggctcctttggatcttgtccatcccttcatatatttt
tttcggagtcgagtcccggatgctttttgtaagcaacccttctggtttgt
gctcaactccctccctccctctgttcctcttcacctcacctctgcagACT
AATCCACGAGCAGAAATTTGAGGCGAAGAATCACGACGAGACGCATGATG
CTGTGGGAGACTATGTCAAATCCATGATTTTTGGGGGACTGGACGGCATC
CTGACTTCCTTCGCCATTGTTGCTGGCGCGGCTGGAGGTGGGCTGCCGGT
TGAGGTGGTAATGGTGTTAGGGTTCAGCAATATATTCGCGGATGCTTTCA
GCATGGGTATGGGGGAGTATCTGAGCAGCAAGGCGCACAATGAGTTTGTG
TTGAAGGAGAAAGAGAGGGAGAGTTGgtgagtgtccttatgagggaggag
ggagggagggaggtggtagtggatgcaagtggtgaatttgcaatcgcagc
aacggcaccttttttagtcctgacattgctgaccggaagagattgatcgg
catcacatgttattatctgatcttgcaaggttagatgcacacaaactcgc
tgaaagcctcctctctctccatcttcttacctctcttacttcagGGAGCT
GCAAAATTTCCGGGAAGGAGAAATAAAAGAGATGATCGATATTTATGTGG
AGAGAGGGATGGAGGCAGATGATGCCGAGgtacgtgcatataatatctga
gggtatacgtagatggaagtggaggagattgtgcgttatgtttttccttt
tattgagcgttgtgcatttgttttcttcccttttttgtgccttgggaggg
agtgcttgagaattagagcgcggggtggaggaagtgtgagggcgggtggc
acagacgtgcgttttcatgctcgaaagataagaagaaagaggatagggat
gtggacgacgaagtacgggagtggcgactgttttgttgtctccaagccgc
ttgatgtgattccttcgttcaccctctctcgctctctcactcttcttctc
acagGACGTGGTGCGGAAGATGAGCAAGTACGACAACTTTTTTGTCAACG
TGATGATGGTGGAGGAGCTGGGGCTGCAAGTGCCAGATCCAGACGACGAT
ATCGTCAAGGAAGGGGTTGTGATGTTTTTGGCCTTTGCGGGGTTTGGTGC
GATGCCCCTGTTGGGCTACGCGCTGATTCCTTTGTGTTTCCCGCATTTTG
GACCGAAGGCCTTATTCAATGTTGCGTGCATTGTGACTGCGCTGACGTTA
TTTGTGATGGGCGCGGTGAAGAGCAAGTTTTCTACGCGGGGATGGCTGCA
CTCGGGGATGGAGATGTTGGTGCTGGGAGGGGTGTGTGCGCTGATGGCGT
ATGAAATCGGGCACTTGGTCAGCAGTCTGGTGGGAGTGGGGGAGGTATAG
GGAGAGCGGATAAAGGAAGACAAGAGGGCGAGAGTGACAGGAAATGTGAG
TGGAGAAGAACTGTGCCTGTCGGTGAATAGAAAGGGGAATATTTTTGGAT
GGAGGGATGCACGAAGGCCATGGCAGGCGAGGCAGAGGCTAATGAAACTG
CGCATAAAGGAAGGAAGGGAAACAGAAGCAGCAGCCGGACAGCGGCAGGA
TTAAGAATAATCGAGGGTGAGATGGTAAATGGTGGTCGTCAGATTTCTAT
ACATACAGCAATCCAACCATAGTGTCGAAATGTTTTGTGCAAGCAATAAT
CAACCTCATCCAAAAAGATAAGCTACAAACGAAGAAAAAGGCGGTGATGG
ACCGAGAACGATACAAGACAGAAGACGAAAGAGAAGACGAAAGAGAAGAA
AAGGAGGTGAAGAGAAAAAGAAGGAAAACAGCACGGAATATTTGTTCGCA
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protein sequence of NO05G03240.1

>NO05G03240.1-protein ID=NO05G03240.1-protein|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MELPGQMDGHSNGHANGNGFHATEKTCLVQAAQHAYRLNDIEASRLIHEQ
KFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVM
VLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKE
MIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIV
KEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFV
MGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGEV*
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Synonyms
Publications