NO05G03240.1, NO05G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03240.1
Unique NameNO05G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1728
Alignment locationchr5:842106..844755 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:842106..844755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03240.1 vs.
Match: EWM28095.1 (vacuolar iron family transporter [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 2.700e-147
Identity = 265/296 (89.53%), Postives = 280/296 (94.59%), Query Frame = 0
Query:    1 MELPGQMDGHSNGHANGNGFHATEKTCLVQAAQHAYRLNDIEASRLIHEQKFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKEMIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIVKEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFVMGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGE 297
            ME+   M+GHSNGHA+GNG H TEKT LVQ AQHAYRLND+EASRLIH+QKFEAK HDETHD+VGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFV KEKERESWELQNFREGEIKEMIDIYVERGME DDAEDVVRKMSKYD+FFVNVMMVEELGLQVPDP+DDIVKEGVVMFL+FAGFGAMPLLGYALIPLCFP  GP  LFN+AC VTALTLF+MGAVKSKFSTRGWLHSG+EMLVLGG+CA+MAYEIGHLVSSLVG G+
Sbjct:    1 MEIHTHMNGHSNGHASGNGIHPTEKTSLVQQAQHAYRLNDVEASRLIHQQKFEAKTHDETHDSVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVFKEKERESWELQNFREGEIKEMIDIYVERGMEPDDAEDVVRKMSKYDDFFVNVMMVEELGLQVPDPNDDIVKEGVVMFLSFAGFGAMPLLGYALIPLCFPSLGPSHLFNIACGVTALTLFIMGAVKSKFSTRGWLHSGLEMLVLGGICAVMAYEIGHLVSSLVGAGD 296          
The following BLAST results are available for this feature:
BLAST of NO05G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28095.12.700e-14789.53vacuolar iron family transporter [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03240NO05G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03240.1NO05G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03240.1.cds1NO05G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03240.1.cds2NO05G03240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03240.1.cds3NO05G03240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03240.1.cds4NO05G03240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03240.1 ID=NO05G03240.1|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
CTCGAAGTGTGTGTCCCCAGGGCACACCATGCCTGCATCAGCACAGTCGT
TCCACCTCTTTGCTGGTGGCTGCAACAGGTGAAATGTGTTTACGATGTTG
TCATTGGATAAGCCTAAACATCTGCTTGTTGGCAGCAAGCAAGATCATTC
TTCCACCACCTCACTAATCTCCCAATGCCCACACCTCAACCACCAGGACA
CAGCGCAACAAGGATTAGACCACGCCCATACGTCAGGAGTAGGTCGCTCA
ATAGGTTACTGCAGACACGGTAGGCGACCGCCTCTTTCTTGGTGCGCCGC
GGCTAGACAGCCTTACCACTGCCGTTGTCCCGGACGACGCCGGCAGCATT
TCCAACCCACACAACGACTCCCCGCACCACCATCATGGAGCTGCCCGGTC
AGATGGACGGTCACTCTAATGGGCACGCTAACGGAAATGGCTTTCATGCC
ACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGCATGCCTACCGACTAAA
TGATATCGAGGCTTCCCGACTAATCCACGAGCAGAAATTTGAGGCGAAGA
ATCACGACGAGACGCATGATGCTGTGGGAGACTATGTCAAATCCATGATT
TTTGGGGGACTGGACGGCATCCTGACTTCCTTCGCCATTGTTGCTGGCGC
GGCTGGAGGTGGGCTGCCGGTTGAGGTGGTAATGGTGTTAGGGTTCAGCA
ATATATTCGCGGATGCTTTCAGCATGGGTATGGGGGAGTATCTGAGCAGC
AAGGCGCACAATGAGTTTGTGTTGAAGGAGAAAGAGAGGGAGAGTTGGGA
GCTGCAAAATTTCCGGGAAGGAGAAATAAAAGAGATGATCGATATTTATG
TGGAGAGAGGGATGGAGGCAGATGATGCCGAGGACGTGGTGCGGAAGATG
AGCAAGTACGACAACTTTTTTGTCAACGTGATGATGGTGGAGGAGCTGGG
GCTGCAAGTGCCAGATCCAGACGACGATATCGTCAAGGAAGGGGTTGTGA
TGTTTTTGGCCTTTGCGGGGTTTGGTGCGATGCCCCTGTTGGGCTACGCG
CTGATTCCTTTGTGTTTCCCGCATTTTGGACCGAAGGCCTTATTCAATGT
TGCGTGCATTGTGACTGCGCTGACGTTATTTGTGATGGGCGCGGTGAAGA
GCAAGTTTTCTACGCGGGGATGGCTGCACTCGGGGATGGAGATGTTGGTG
CTGGGAGGGGTGTGTGCGCTGATGGCGTATGAAATCGGGCACTTGGTCAG
CAGTCTGGTGGGAGTGGGGGAGGTATAGGGAGAGCGGATAAAGGAAGACA
AGAGGGCGAGAGTGACAGGAAATGTGAGTGGAGAAGAACTGTGCCTGTCG
GTGAATAGAAAGGGGAATATTTTTGGATGGAGGGATGCACGAAGGCCATG
GCAGGCGAGGCAGAGGCTAATGAAACTGCGCATAAAGGAAGGAAGGGAAA
CAGAAGCAGCAGCCGGACAGCGGCAGGATTAAGAATAATCGAGGGTGAGA
TGGTAAATGGTGGTCGTCAGATTTCTATACATACAGCAATCCAACCATAG
TGTCGAAATGTTTTGTGCAAGCAATAATCAACCTCATCCAAAAAGATAAG
CTACAAACGAAGAAAAAGGCGGTGATGGACCGAGAACGATACAAGACAGA
AGACGAAAGAGAAGACGAAAGAGAAGAAAAGGAGGTGAAGAGAAAAAGAA
GGAAAACAGCACGGAATATTTGTTCGCA
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protein sequence of NO05G03240.1

>NO05G03240.1-protein ID=NO05G03240.1-protein|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MELPGQMDGHSNGHANGNGFHATEKTCLVQAAQHAYRLNDIEASRLIHEQ
KFEAKNHDETHDAVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVM
VLGFSNIFADAFSMGMGEYLSSKAHNEFVLKEKERESWELQNFREGEIKE
MIDIYVERGMEADDAEDVVRKMSKYDNFFVNVMMVEELGLQVPDPDDDIV
KEGVVMFLAFAGFGAMPLLGYALIPLCFPHFGPKALFNVACIVTALTLFV
MGAVKSKFSTRGWLHSGMEMLVLGGVCALMAYEIGHLVSSLVGVGEV*
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mRNA from alignment at chr5:842106..844755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03240.1 ID=NO05G03240.1|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2650bp|location=Sequence derived from alignment at chr5:842106..844755+ (Nannochloropsis oceanica)
CTCGAAGTGTGTGTCCCCAGGGCACACCATGCCTGCATCAGCACAGTCGT TCCACCTCTTTGCTGGTGGCTGCAACAGGTGAAATGTGTTTACGATGTTG TCATTGGATAAGCCTAAACATCTGCTTGTTGGCAGCAAGCAAGATCATTC TTCCACCACCTCACTAATCTCCCAATGCCCACACCTCAACCACCAGGACA CAGCGCAACAAGGATTAGACCACGCCCATACGTCAGGAGTAGGTCGCTCA ATAGGTTACTGCAGACACGGTAGGCGACCGCCTCTTTCTTGGTGCGCCGC GGCTAGACAGCCTTACCACTGCCGTTGTCCCGGACGACGCCGGCAGCATT TCCAACCCACACAACGACTCCCCGCACCACCATCATGGAGCTGCCCGGTC AGATGGACGGTCACTCTAATGGGCACGCTAACGGAAATGGCTTTCATGCC ACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGCATGCCTACCGACTAAA TGATATCGAGGCTTCCCGGTACGTACAACCAAAGAAGAGAGCAGGCGAAT AGCAATGCACTTGTGAATGGGGCGGAGATGAAGGGTACATGCGAGTGGAT ACGGATGTAGATAACTGCAGAGGTGATGTTATTAATCATTGGTTTTCGGC CTCCCGTCTCGGGTGCTTTTGCTGAAAAGTCCCATGTAACACGAACCATT CTGGACGTGCGTCGACTTCCTGTCGGCATGATGTCCCTCATTGCCCGCAA TCCCTTCCCCTCCGGCTCCTTTGGATCTTGTCCATCCCTTCATATATTTT TTTCGGAGTCGAGTCCCGGATGCTTTTTGTAAGCAACCCTTCTGGTTTGT GCTCAACTCCCTCCCTCCCTCTGTTCCTCTTCACCTCACCTCTGCAGACT AATCCACGAGCAGAAATTTGAGGCGAAGAATCACGACGAGACGCATGATG CTGTGGGAGACTATGTCAAATCCATGATTTTTGGGGGACTGGACGGCATC CTGACTTCCTTCGCCATTGTTGCTGGCGCGGCTGGAGGTGGGCTGCCGGT TGAGGTGGTAATGGTGTTAGGGTTCAGCAATATATTCGCGGATGCTTTCA GCATGGGTATGGGGGAGTATCTGAGCAGCAAGGCGCACAATGAGTTTGTG TTGAAGGAGAAAGAGAGGGAGAGTTGGTGAGTGTCCTTATGAGGGAGGAG GGAGGGAGGGAGGTGGTAGTGGATGCAAGTGGTGAATTTGCAATCGCAGC AACGGCACCTTTTTTAGTCCTGACATTGCTGACCGGAAGAGATTGATCGG CATCACATGTTATTATCTGATCTTGCAAGGTTAGATGCACACAAACTCGC TGAAAGCCTCCTCTCTCTCCATCTTCTTACCTCTCTTACTTCAGGGAGCT GCAAAATTTCCGGGAAGGAGAAATAAAAGAGATGATCGATATTTATGTGG AGAGAGGGATGGAGGCAGATGATGCCGAGGTACGTGCATATAATATCTGA GGGTATACGTAGATGGAAGTGGAGGAGATTGTGCGTTATGTTTTTCCTTT TATTGAGCGTTGTGCATTTGTTTTCTTCCCTTTTTTGTGCCTTGGGAGGG AGTGCTTGAGAATTAGAGCGCGGGGTGGAGGAAGTGTGAGGGCGGGTGGC ACAGACGTGCGTTTTCATGCTCGAAAGATAAGAAGAAAGAGGATAGGGAT GTGGACGACGAAGTACGGGAGTGGCGACTGTTTTGTTGTCTCCAAGCCGC TTGATGTGATTCCTTCGTTCACCCTCTCTCGCTCTCTCACTCTTCTTCTC ACAGGACGTGGTGCGGAAGATGAGCAAGTACGACAACTTTTTTGTCAACG TGATGATGGTGGAGGAGCTGGGGCTGCAAGTGCCAGATCCAGACGACGAT ATCGTCAAGGAAGGGGTTGTGATGTTTTTGGCCTTTGCGGGGTTTGGTGC GATGCCCCTGTTGGGCTACGCGCTGATTCCTTTGTGTTTCCCGCATTTTG GACCGAAGGCCTTATTCAATGTTGCGTGCATTGTGACTGCGCTGACGTTA TTTGTGATGGGCGCGGTGAAGAGCAAGTTTTCTACGCGGGGATGGCTGCA CTCGGGGATGGAGATGTTGGTGCTGGGAGGGGTGTGTGCGCTGATGGCGT ATGAAATCGGGCACTTGGTCAGCAGTCTGGTGGGAGTGGGGGAGGTATAG GGAGAGCGGATAAAGGAAGACAAGAGGGCGAGAGTGACAGGAAATGTGAG TGGAGAAGAACTGTGCCTGTCGGTGAATAGAAAGGGGAATATTTTTGGAT GGAGGGATGCACGAAGGCCATGGCAGGCGAGGCAGAGGCTAATGAAACTG CGCATAAAGGAAGGAAGGGAAACAGAAGCAGCAGCCGGACAGCGGCAGGA TTAAGAATAATCGAGGGTGAGATGGTAAATGGTGGTCGTCAGATTTCTAT ACATACAGCAATCCAACCATAGTGTCGAAATGTTTTGTGCAAGCAATAAT CAACCTCATCCAAAAAGATAAGCTACAAACGAAGAAAAAGGCGGTGATGG ACCGAGAACGATACAAGACAGAAGACGAAAGAGAAGACGAAAGAGAAGAA AAGGAGGTGAAGAGAAAAAGAAGGAAAACAGCACGGAATATTTGTTCGCA
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Coding sequence (CDS) from alignment at chr5:842106..844755+

>NO05G03240.1 ID=NO05G03240.1|Name=NO05G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr5:842106..844755+ (Nannochloropsis oceanica)
ATGGAGCTGCCCGGTCAGATGGACGGTCACTCTAATGGGCACGCTAACGG
AAATGGCTTTCATGCCACGGAGAAGACGTGCTTAGTCCAGGCAGCTCAGC
ATGCCTACCGACTAAATGATATCGAGGCTTCCCGACTAATCCACGAGCAG
AAATTTGAGGCGAAGAATCACGACGAGACGCATGATGCTGTGGGAGACTA
TGTCAAATCCATGATTTTTGGGGGACTGGACGGCATCCTGACTTCCTTCG
CCATTGTTGCTGGCGCGGCTGGAGGTGGGCTGCCGGTTGAGGTGGTAATG
GTGTTAGGGTTCAGCAATATATTCGCGGATGCTTTCAGCATGGGTATGGG
GGAGTATCTGAGCAGCAAGGCGCACAATGAGTTTGTGTTGAAGGAGAAAG
AGAGGGAGAGTTGGGAGCTGCAAAATTTCCGGGAAGGAGAAATAAAAGAG
ATGATCGATATTTATGTGGAGAGAGGGATGGAGGCAGATGATGCCGAGGA
CGTGGTGCGGAAGATGAGCAAGTACGACAACTTTTTTGTCAACGTGATGA
TGGTGGAGGAGCTGGGGCTGCAAGTGCCAGATCCAGACGACGATATCGTC
AAGGAAGGGGTTGTGATGTTTTTGGCCTTTGCGGGGTTTGGTGCGATGCC
CCTGTTGGGCTACGCGCTGATTCCTTTGTGTTTCCCGCATTTTGGACCGA
AGGCCTTATTCAATGTTGCGTGCATTGTGACTGCGCTGACGTTATTTGTG
ATGGGCGCGGTGAAGAGCAAGTTTTCTACGCGGGGATGGCTGCACTCGGG
GATGGAGATGTTGGTGCTGGGAGGGGTGTGTGCGCTGATGGCGTATGAAA
TCGGGCACTTGGTCAGCAGTCTGGTGGGAGTGGGGGAGGTATAG
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Synonyms
Publications