NO05G03200, NO05G03200 (gene) Nannochloropsis oceanica

Overview
NameNO05G03200
Unique NameNO05G03200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr5:830817..832272 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:830817..832272 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
BLAST of NO05G03200 vs. NCBI_GenBank
Match: EWM28093.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 542.7 bits (1397), Expect = 1.100e-150
Identity = 269/365 (73.70%), Postives = 310/365 (84.93%), Query Frame = 0
Query:  101 DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEVEKLGGLHVAEQGGEG 466
            DL +AAAASDAEKA+ AL+KFPHMP EPT+LVYNVAIGTCVRAGQMGKA+GLLNQLFES+K HV+PN LTYNLL+ GAARAGDW QAQ F +EML+H++RP+A TYQ LL+ACGK K+KKMV +LLSQ+ GPK   +YTTAIAASARCGDW+GALALLRQ++EE G  P   A+ AAMFAC+KP+PARW E LDLL EMRS GLPVGLTAYNTAILCAG+AHE AVAQRLLDE+K          GK G + PNNGSYRG++K LAK+G +EKCL +LEEMA+  LEPDLL++TDAMEVFARS NPGAT+R+L+QMK AKQPDLRLYL PLIDADEA+ERPV+  FV+EVEKLG LHVAE  GEG
Sbjct:   74 DLGKAAAASDAEKAIAALSKFPHMPPEPTLLVYNVAIGTCVRAGQMGKAMGLLNQLFESRKEHVLPNSLTYNLLLLGAARAGDWPQAQGFHEEMLRHRVRPNADTYQNLLVACGKGKDKKMVGDLLSQVIGPKPSHVYTTAIAASARCGDWEGALALLRQLREESGRTPEPEAFHAAMFACTKPEPARWMECLDLLGEMRSAGLPVGLTAYNTAILCAGLAHEPAVAQRLLDELK---------AGKAGNVAPNNGSYRGVVKGLAKSGDHEKCLNLLEEMAQAKLEPDLLIFTDAMEVFARSQNPGATLRVLHQMKAAKQPDLRLYLGPLIDADEASERPVLSAFVQEVEKLGALHVAE--GEG 427          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_013468247.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Medicago truncatula] >KEH42284.1 PPR containing plant-like protein [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 7.600e-11
Identity = 63/302 (20.86%), Postives = 127/302 (42.05%), Query Frame = 0
Query:  118 LNKFPHMPA--EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            +N  P +P    P   +Y   +   ++AG++   + +L  +   + +   P+H++Y  +V    +AG   +A     EM +  +  +  TY  LL   G  K+ +M                                A+ LL++M E+ G+EP V +Y   +  C   D +    +L    EMR+KG+     +Y T +    ++ +  +AQR+ DEM  +            R+  +  ++  L++  ++ G  E+   V+++M + G  P++  Y       + +  PG  + + N++K
Sbjct:  343 VNDLPLLPKAYTPNTRIYTTLMKGYMKAGRVADTVRMLEAMRYQEDSSSHPDHVSYTTVVSALVKAGFMDRAHQVLAEMTRIGVPANRITYNILLK--GYCKQLQM------------------------------DKAMELLQEMAEDIGIEPDVVSYNILIDGCILVDDS--AGALSFFNEMRAKGIAPTKVSYTTLMKAFALSGQPKLAQRVFDEMVTD-----------ARVRVDLIAWNMLVEGYSRLGLVEEVKKVIQKMKENGFYPNVSTYGSFANAISLARKPGEALILWNEVK 599          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: GAX28990.1 (hypothetical protein FisN_1Hh012 [Fistulifera solaris])

HSP 1 Score: 75.1 bits (183), Expect = 6.500e-10
Identity = 77/342 (22.51%), Postives = 134/342 (39.18%), Query Frame = 0
Query:  121 FPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARA-------------------GDWTQAQSFRDEMLQHQ--------LRPDAHTYQGLLMACGKAKEKK----MVAELLSQIDGPKLVP-----------IYTTAIAASARCGDWQGALALLRQMKEEDG--LEPGVGAYQAAMFACSKPDPARWTESLDLLREM-RSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            FPH   E  ++ Y  AI  C   GQ   A  L++++   +K  V PN +T+  ++   A A                    D T ++ ++  M   +        + P+ H Y   L  C +A + K    +  EL+   D    +P            + T + A  R G  +G   + R M++  G  ++P    Y AA+ AC +        S  L  +M ++  L   +  YNT +L    A       R L   +                 PN  SY+ +I++LA      + L +L++M + G  PD+ LYT  +  F ++  P   ++++  M+
Sbjct:  212 FPH--EEANVVAYTAAIAGCESEGQWKVAFRLVDRM---RKRGVQPNEMTFVAVLAACATACARQASTLASKTSTDVSAPKDITSSEPYQQAMKLLRVLKKDTTVVNPNIHVYNAALRVCAEACDLKGAFALYNELIEDRDSSANIPEGTVTLAPNIVTFGTLMTACERVGSMEGVTQVFRWMQDLSGPPIKPNEIVYGAALSACRRAQNDE--RSFFLFEQMLQNPKLRPNVATYNTVLLAQTEAGTKTSTARALSVFRS--------LYNSPYTQPNRQSYQIIIRALALDRRPLEALTLLQQMQQAGFRPDVDLYTCTVAAFEKTGQPAQALKLMEAMR 538          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: GAU26737.1 (hypothetical protein TSUD_317350 [Trifolium subterraneum])

HSP 1 Score: 74.7 bits (182), Expect = 8.500e-10
Identity = 62/261 (23.75%), Postives = 113/261 (43.30%), Query Frame = 0
Query:  166 PNHLTYNLLVFGAARAGDWT------QAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQ---IDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            PN   Y  L+ G  +AG  T      +A   +D+   H   PD  +Y  ++ A  KA       E+L++   I  P     Y   +    +      A  LL++M E+ G++P V +Y   +  C   D +    +L    EMR+KG+     +Y T +    ++ +  +AQR+ DEM  +            R+  +  ++  L++  ++ G  E+   V+++M + G  PD+  Y       A +  PG  + + N++K
Sbjct:  371 PNTRIYTTLMKGYMKAGRVTDTVRMLEAMRCQDDSASH---PDHVSYTTVVSALVKAGFMDRACEVLAEMTRISVPANRITYNILLKGYCKQLQMDTARELLKEMAEDAGIQPDVVSYNILINGCILVDDS--AGALSFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAQRVFDEMAND-----------TRVRVDLIAWNMLVEGYSRLGLVEEAKKVIQKMKENGFYPDVSTYGSFASGIALARKPGEALILWNEVK 615          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: PIN18480.1 (hypothetical protein CDL12_08852 [Handroanthus impetiginosus])

HSP 1 Score: 74.7 bits (182), Expect = 8.500e-10
Identity = 63/298 (21.14%), Postives = 125/298 (41.95%), Query Frame = 0
Query:  120 KFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            + PH  A P   +Y   +   ++AG++   + +L  +   + +   P+H++Y  ++    +AG   +A+    EM + Q+  +  TY  LL        K    +L  QID                       A  L+R+M +E G+EP V +Y   +  C   D +    +L    EMR +G+     +Y T +     + +  +A ++ DEM K+            R+  +  ++  L++   K G  ++   ++++M   G+ P++  Y       A +  PG  + + N++K
Sbjct:  363 ELPHAVA-PDSRIYTTLMKGYMKAGRVADTVRMLEAMRHQKDSSSHPDHVSYTTVISAFVKAGLMDRARQVVTEMARIQVPANLITYNILL--------KGYCQQL--QID----------------------KAEDLIREMVDEAGIEPDVVSYNTLIDGCILVDDS--AGALTYFNEMRKRGIAPTKVSYTTLMKAFASSGQPKLANKVFDEMLKD-----------PRVKVDLVAWNMLVEGYCKLGLVDEAKSIIQKMKDNGVHPNVATYGSLANGIALARKPGEALLLWNEIK 614          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_015062642.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X1 [Solanum pennellii])

HSP 1 Score: 73.6 bits (179), Expect = 1.900e-9
Identity = 75/333 (22.52%), Postives = 140/333 (42.04%), Query Frame = 0
Query:  127 EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKA-KEKKMVAELLSQIDGPKLVP-IYTTAIAASARCGDWQGALALLRQMKEE---DGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAK-QPDLRLYLAPLIDADEAAERPVVEMFVKEVEKL 454
            EPT  +Y   IG   R+  + KA  LLN + +    H  P+  TY++L+     A  +   +S  ++M    + P+  T   +L   G+A K  +M   L+  ++     P  +T     S  C   +G + ++ +  E+    G+EP    +   + A  K     + +   ++  MR    P   + YN  I     A E    +   D+M+ EG            +  +  ++  L++  A AG + K +  ++   K  +  +  L+   +   A++ +     R+  +MK  + QPDL  Y + +IDA +  E    +++  E EKL
Sbjct:  165 EPTPELYTALIGAYCRSNILDKAFSLLNAMID--LPHCQPDVYTYSILIKACVDASRFDLVESLYEQMADRSIVPNTVTQNIVLSGYGRAGKYAEMEKVLVGMLESADSKPDEWTMNTILSIFCN--KGLIVMMERWYEKFCNFGIEPETRTFNILIGAYGK--RKMYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFSDAGEAKHMEYTFDQMRAEG------------MKADTKTFCCLVRGYANAGLFHKVINTVQLAGKLEIPENTSLFNSVIYACAKAEDVMEMERVFKRMKDKQCQPDLMTY-STMIDAYQ-KEGMTDKVYDLEQEKL 477          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_010107596.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Morus notabilis] >EXC16278.1 hypothetical protein L484_024452 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 4.200e-9
Identity = 60/290 (20.69%), Postives = 120/290 (41.38%), Query Frame = 0
Query:  128 PTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            P   +Y   +   ++AG++   + +L  +   + +   P+H++Y  +V     +G   +A+    EM + ++  +  TY  LL   G  K+         QID  K                       LL++M E+ G+EP V +Y   +  C   D +    +L    EMR+KG+     +Y T +    ++ +  +A ++ DEM  +            R+  +  ++  L++   K G  E+   +++ M + G  P++  Y       A +  PG  + + N++K
Sbjct:  373 PDSRIYTTLMKGYMKAGRVTDTVRMLEAMRHQEDSASHPDHVSYTTVVSAFVNSGSMDRARQVFAEMTRIRVPANRITYNILLK--GYCKQ--------LQIDKAK----------------------ELLKEMAEDAGIEPDVVSYNILIDGCILVDDS--AGALTFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAHKVFDEMLDD-----------PRVKADIIAWNMLVEGYCKLGLVEEAKKIVQRMKENGFHPNVATYGSLANGIAVARKPGEALLLWNEVK 617          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_008369807.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Malus domestica])

HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9
Identity = 60/286 (20.98%), Postives = 117/286 (40.91%), Query Frame = 0
Query:  132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            +Y   +   + AG++   + +L  L     +   P+H+TY  ++    +AG   +A+    EM +  +  +  TY  LL        K    +L  QID  K                       LLR+M ++ G+EP V +Y   +  C   D +    +L    EMR+KG+     +Y T +    ++ +  +A ++ DEM  +            R+  +  ++  L+++  + G  E+   +++ +   G  PD+  Y       A +  PG  + + N++K
Sbjct:  380 IYTTLMKGYMNAGRITDTVRMLEALRHEDDSASHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALAFFNEMRTKGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRLGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 620          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_009358186.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9
Identity = 60/286 (20.98%), Postives = 117/286 (40.91%), Query Frame = 0
Query:  132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            +Y   +   + AG++   + +L  L     +   P+H+TY  ++    +AG   +A+    EM +  +  +  TY  LL        K    +L  QID  K                       LLR+M ++ G+EP V +Y   +  C   D +    +L    EMR+KG+     +Y T +    ++ +  +A ++ DEM  +            R+  +  ++  L+++  + G  E+   +++ +   G  PD+  Y       A +  PG  + + N++K
Sbjct:  380 IYTTLMKGYMNAGRITDTVRMLEALRHEDDSASHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------QLLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALAFFNEMRTKGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRLGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 620          
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_015868324.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9
Identity = 74/321 (23.05%), Postives = 118/321 (36.76%), Query Frame = 0
Query:  137 IGTCVRA--GQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMAC-----------------------------------GKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACS---KPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418
            + TC  +  G +  A  +  Q+ E       P+   YN ++ G  +  +W QA     EML+  + PD  TY  LL AC                                   GK KE  +   +  Q++  K +  ++  IAA A  G W   L L   M+ E    P      + + AC+     D  + T +  LLR +    L V  +  +  + C  +     + Q+    M K+                N  SY  +I  LA  G   + L V +EM KEGL PD ++Y   +     +      ++  N+M+
Sbjct:   80 VATCALSDWGSLDYACSIFQQIDE-------PDTFLYNTMIRGHVKGMNWGQALLLYHEMLERGVEPDNFTYPALLKACSLLRFLEDGKQIHGHIFKLGLQDDVFVQNSLINMYGKCKETDLSCAVFEQMN-QKTIASWSAIIAAHASLGMWSECLILFGDMRSEGFWRPEESILVSVLSACTHLGALDLGKCTHA-SLLRNINGLNLIVKTSLIDMYVKCGCLEKGLCLFQK----MNKK----------------NQLSYSVIISGLAMHGHGREALEVFKEMLKEGLAPDDVVYVGVLSACGHAGLVDEGLQFFNRMQ 371          
The following BLAST results are available for this feature:
BLAST of NO05G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28093.11.100e-15073.70Pentatricopeptide repeat containing protein [Nanno... [more]
XP_013468247.17.600e-1120.86pentatricopeptide repeat-containing protein At3g09... [more]
GAX28990.16.500e-1022.51hypothetical protein FisN_1Hh012 [Fistulifera sola... [more]
GAU26737.18.500e-1023.75hypothetical protein TSUD_317350 [Trifolium subter... [more]
PIN18480.18.500e-1021.14hypothetical protein CDL12_08852 [Handroanthus imp... [more]
XP_015062642.11.900e-922.52PREDICTED: pentatricopeptide repeat-containing pro... [more]
XP_010107596.14.200e-920.69pentatricopeptide repeat-containing protein At3g09... [more]
XP_008369807.17.200e-920.98PREDICTED: pentatricopeptide repeat-containing pro... [more]
XP_009358186.17.200e-920.98PREDICTED: pentatricopeptide repeat-containing pro... [more]
XP_015868324.17.200e-923.05PREDICTED: pentatricopeptide repeat-containing pro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003545NSK003545Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03200.1NO05G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564904gene_3126Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100120g8gene2482Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03200.1NO05G03200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03200 ID=NO05G03200|Name=NO05G03200|organism=Nannochloropsis oceanica|type=gene|length=1456bp
ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC
AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG
CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT
AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC
GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT
CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA
GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC
CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA
ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT
GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA
CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT
GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC
CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA
GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC
TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC
TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT
GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC
CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT
AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG
TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA
TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG
CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA
AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG
AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT
GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA
GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG
CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG
GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG
GATGTGAGGGGGAAGGGAAGAAAGAGCAAAGAAGCAAGCGAAGTGCGAGT
GTGAGA
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protein sequence of NO05G03200.1

>NO05G03200.1-protein ID=NO05G03200.1-protein|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MEPSLMRQILRRVPPLAGPSMRHTTGVRPKSVGATSRRSSNNSRSHSTLS
RLLSTPPLSAQISASRALSSSSSSSSSSSPPFSSTASATEGKTTLQALVQ
DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAI
GLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLR
PDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGD
WQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMR
SKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGREGGEEGKGGR
LVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVF
ARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEV
EKLGGLHVAEQGGEGGGM*
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