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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:830817..832272 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03200.1 vs.
Match: EWM28093.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 555.8 bits (1431), Expect = 1.300e-154 Identity = 279/384 (72.66%), Postives = 324/384 (84.38%), Query Frame = 0
Query: 82 FSSTASATEGKTTLQALVQDLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGREGGEEGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEVEKLGGLHVAEQGGEG 466
FSS+A ++ K + QALVQDL +AAAASDAEKA+ AL+KFPHMP EPT+LVYNVAIGTCVRAGQMGKA+GLLNQLFES+K HV+PN LTYNLL+ GAARAGDW QAQ F +EML+H++RP+A TYQ LL+ACGK K+KKMV +LLSQ+ GPK +YTTAIAASARCGDW+GALALLRQ++EE G P A+ AAMFAC+KP+PARW E LDLL EMRS GLPVGLTAYNTAILCAG+AHE AVAQRLLDE+K GK G + PNNGSYRG++K LAK+G +EKCL +LEEMA+ LEPDLL++TDAMEVFARS NPGAT+R+L+QMK AKQPDLRLYL PLIDADEA+ERPV+ FV+EVEKLG LHVAE GEG
Sbjct: 55 FSSSAGQSDSKISFQALVQDLGKAAAASDAEKAIAALSKFPHMPPEPTLLVYNVAIGTCVRAGQMGKAMGLLNQLFESRKEHVLPNSLTYNLLLLGAARAGDWPQAQGFHEEMLRHRVRPNADTYQNLLVACGKGKDKKMVGDLLSQVIGPKPSHVYTTAIAASARCGDWEGALALLRQLREESGRTPEPEAFHAAMFACTKPEPARWMECLDLLGEMRSAGLPVGLTAYNTAILCAGLAHEPAVAQRLLDELK---------AGKAGNVAPNNGSYRGVVKGLAKSGDHEKCLNLLEEMAQAKLEPDLLIFTDAMEVFARSQNPGATLRVLHQMKAAKQPDLRLYLGPLIDADEASERPVLSAFVQEVEKLGALHVAE--GEG 427
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03200.1 ID=NO05G03200.1|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG GATGTGAGGGGGAAGGGAAGAAAGAGCAAAGAAGCAAGCGAAGTGCGAGT GTGAGA back to topprotein sequence of NO05G03200.1 >NO05G03200.1-protein ID=NO05G03200.1-protein|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp MEPSLMRQILRRVPPLAGPSMRHTTGVRPKSVGATSRRSSNNSRSHSTLS RLLSTPPLSAQISASRALSSSSSSSSSSSPPFSSTASATEGKTTLQALVQ DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAI GLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLR PDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGD WQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMR SKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGREGGEEGKGGR LVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVF ARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEV EKLGGLHVAEQGGEGGGM* back to topmRNA from alignment at chr5:830817..832272+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03200.1 ID=NO05G03200.1|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp|location=Sequence derived from alignment at chr5:830817..832272+ (Nannochloropsis oceanica) ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC
AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG
CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT
AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC
GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT
CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA
GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC
CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA
ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT
GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA
CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT
GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC
CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA
GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC
TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC
TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT
GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC
CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT
AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG
TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA
TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG
CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA
AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG
AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT
GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA
GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG
CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG
GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG
GATGTGAGGGGGAAGGGAAGAAAGAGCAAAGAAGCAAGCGAAGTGCGAGT
GTGAGA back to topCoding sequence (CDS) from alignment at chr5:830817..832272+ >NO05G03200.1 ID=NO05G03200.1|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr5:830817..832272+ (Nannochloropsis oceanica) ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG GATGTGA back to top
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