NO05G03200.1, NO05G03200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03200.1
Unique NameNO05G03200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr5:830817..832272 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:830817..832272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03200.1 vs.
Match: EWM28093.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 555.8 bits (1431), Expect = 1.300e-154
Identity = 279/384 (72.66%), Postives = 324/384 (84.38%), Query Frame = 0
Query:   82 FSSTASATEGKTTLQALVQDLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGREGGEEGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEVEKLGGLHVAEQGGEG 466
            FSS+A  ++ K + QALVQDL +AAAASDAEKA+ AL+KFPHMP EPT+LVYNVAIGTCVRAGQMGKA+GLLNQLFES+K HV+PN LTYNLL+ GAARAGDW QAQ F +EML+H++RP+A TYQ LL+ACGK K+KKMV +LLSQ+ GPK   +YTTAIAASARCGDW+GALALLRQ++EE G  P   A+ AAMFAC+KP+PARW E LDLL EMRS GLPVGLTAYNTAILCAG+AHE AVAQRLLDE+K          GK G + PNNGSYRG++K LAK+G +EKCL +LEEMA+  LEPDLL++TDAMEVFARS NPGAT+R+L+QMK AKQPDLRLYL PLIDADEA+ERPV+  FV+EVEKLG LHVAE  GEG
Sbjct:   55 FSSSAGQSDSKISFQALVQDLGKAAAASDAEKAIAALSKFPHMPPEPTLLVYNVAIGTCVRAGQMGKAMGLLNQLFESRKEHVLPNSLTYNLLLLGAARAGDWPQAQGFHEEMLRHRVRPNADTYQNLLVACGKGKDKKMVGDLLSQVIGPKPSHVYTTAIAASARCGDWEGALALLRQLREESGRTPEPEAFHAAMFACTKPEPARWMECLDLLGEMRSAGLPVGLTAYNTAILCAGLAHEPAVAQRLLDELK---------AGKAGNVAPNNGSYRGVVKGLAKSGDHEKCLNLLEEMAQAKLEPDLLIFTDAMEVFARSQNPGATLRVLHQMKAAKQPDLRLYLGPLIDADEASERPVLSAFVQEVEKLGALHVAE--GEG 427          
The following BLAST results are available for this feature:
BLAST of NO05G03200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28093.11.300e-15472.66Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03200NO05G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03200.1NO05G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03200.1.cds1NO05G03200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03200.1 ID=NO05G03200.1|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp
ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC
AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG
CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT
AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC
GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT
CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA
GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC
CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA
ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT
GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA
CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT
GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC
CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA
GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC
TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC
TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT
GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC
CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT
AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG
TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA
TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG
CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA
AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG
AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT
GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA
GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG
CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG
GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG
GATGTGAGGGGGAAGGGAAGAAAGAGCAAAGAAGCAAGCGAAGTGCGAGT
GTGAGA
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protein sequence of NO05G03200.1

>NO05G03200.1-protein ID=NO05G03200.1-protein|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MEPSLMRQILRRVPPLAGPSMRHTTGVRPKSVGATSRRSSNNSRSHSTLS
RLLSTPPLSAQISASRALSSSSSSSSSSSPPFSSTASATEGKTTLQALVQ
DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAI
GLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLR
PDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGD
WQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMR
SKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGREGGEEGKGGR
LVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVF
ARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEV
EKLGGLHVAEQGGEGGGM*
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mRNA from alignment at chr5:830817..832272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03200.1 ID=NO05G03200.1|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp|location=Sequence derived from alignment at chr5:830817..832272+ (Nannochloropsis oceanica)
ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG GATGTGAGGGGGAAGGGAAGAAAGAGCAAAGAAGCAAGCGAAGTGCGAGT GTGAGA
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Coding sequence (CDS) from alignment at chr5:830817..832272+

>NO05G03200.1 ID=NO05G03200.1|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr5:830817..832272+ (Nannochloropsis oceanica)
ATGGAGCCATCCCTCATGCGGCAGATCCTGCGGCGGGTGCCGCCCCTAGC
AGGCCCGTCAATGCGACACACGACCGGAGTGCGGCCAAAATCGGTTGGGG
CAACCTCCCGGCGGTCATCCAACAACAGTCGTAGTCACAGCACCCTCTCT
AGGCTGCTGTCCACACCACCACTATCGGCCCAAATCTCCGCATCGCGTGC
GTTATCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCCCACCTTTTTCTT
CAACCGCCTCCGCAACTGAAGGCAAGACGACCCTCCAAGCCCTCGTCCAA
GACCTCGCGCGTGCAGCAGCGGCTTCAGACGCAGAGAAGGCCGTGACAGC
CCTCAACAAATTCCCCCACATGCCTGCCGAGCCTACTATCCTTGTCTACA
ATGTTGCTATCGGTACCTGCGTGCGGGCCGGGCAAATGGGGAAAGCCATT
GGCCTGCTAAACCAGCTCTTTGAAAGCCAGAAAACGCATGTCGTCCCAAA
CCATCTCACCTACAACCTCTTAGTCTTCGGCGCCGCACGCGCGGGCGACT
GGACTCAAGCCCAAAGCTTTCGCGATGAAATGCTGCAGCATCAACTCCGC
CCGGACGCGCATACGTACCAAGGCTTGCTCATGGCATGTGGCAAGGCCAA
GGAAAAAAAAATGGTAGCAGAGCTCCTTAGTCAGATAGACGGACCGAAGC
TCGTCCCTATTTATACGACTGCCATTGCCGCCTCGGCCCGTTGCGGGGAC
TGGCAGGGTGCGCTAGCACTGCTCCGACAGATGAAGGAGGAAGATGGATT
GGAACCAGGGGTAGGTGCGTACCAAGCCGCTATGTTTGCTTGCTCGAAAC
CCGACCCAGCACGATGGACGGAGAGTCTGGATCTGTTGAGGGAGATGCGT
AGTAAAGGGTTACCTGTAGGACTGACGGCTTATAACACCGCTATTTTATG
TGCGGGGATGGCGCATGAGACGGCGGTAGCGCAGCGGTTGTTGGATGAGA
TGAAGAAGGAGGGTGGGCGGGAGGGGGGTGAGGAGGGAAAAGGGGGAAGG
CTGGTGCCGAATAATGGGAGCTATAGGGGTTTGATAAAAAGTTTGGCTAA
AGCGGGAGCTTATGAAAAATGTCTGGGGGTGCTGGAGGAGATGGCGAAGG
AGGGGTTGGAGCCTGATTTGTTATTGTACACAGATGCCATGGAGGTGTTT
GCGAGGAGTCACAACCCGGGGGCGACGATGAGGATTTTGAACCAAATGAA
GGGGGCGAAGCAACCGGATCTAAGGTTGTACCTAGCGCCATTAATTGATG
CAGATGAGGCGGCAGAAAGGCCGGTGGTGGAGATGTTCGTGAAGGAGGTG
GAGAAGTTGGGAGGGTTGCATGTGGCGGAGCAGGGAGGAGAGGGAGGGGG
GATGTGA
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Synonyms
Publications