NO05G03100, NO05G03100 (gene) Nannochloropsis oceanica

Overview
NameNO05G03100
Unique NameNO05G03100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1397
Alignment locationchr5:801677..803073 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:801677..803073 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G03100 vs. NCBI_GenBank
Match: EWM28088.1 (hypothetical protein Naga_100120g19 [Nannochloropsis gaditana])

HSP 1 Score: 129.8 bits (325), Expect = 9.200e-27
Identity = 69/143 (48.25%), Postives = 91/143 (63.64%), Query Frame = 0 
Query:   51 LTQRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLTYFADVQCVVAAISVFAGRPNKTLLFLGFGVGVLNLVAWLGVFYQYTPYPAIGFWWLPVTALFVLAVSLHVDRDLRRLTKEIDLLDKLKYDYKKV 194
            LT+R+F  L   LLL F YC A+T   P+ LEHQ   QSA +   FL TY  +   +V A  V AGR N  LL +     V+NLVAW  +F+ +TP P +G WWLP T LFV+ VSL++D DL+RL +EID LD+++Y +K V
Sbjct:   49 LTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGRGNSQLLAITMCASVINLVAWSCIFWHFTPPPPLGLWWLPTTPLFVVTVSLYIDWDLKRLNREIDALDRMQYRFKNV 191
The following BLAST results are available for this feature:
BLAST of NO05G03100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28088.19.200e-2748.25hypothetical protein Naga_100120g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03100.1NO05G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G03100.2NO05G03100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G03100.3NO05G03100.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584616gene_3115Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100120g19gene2473Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03100.1NO05G03100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G03100.2NO05G03100.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G03100.3NO05G03100.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03100 ID=NO05G03100|Name=NO05G03100|organism=Nannochloropsis oceanica|type=gene|length=1397bp
GAAAAACACGGTCACAGGCACACGACATTAGCTATGAGCAACAGAAGGCG
ACCTCGGCCCGTGCAGGACGGGGATAATGAGGACGCGGGGGACGAGGACG
AGGGGAACCAGCCCGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAATC
GCAGAGCTGCGGCGGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGGTAAG
ATGGGTGGTCGGATAGAAGGACGGTGGGAGGGGCAAAGCATTTGGTGAGA
ATGTGCTGCAGCTGAGAGAGGATACGACAGGTCCGCACGCTATCCTTTTG
TTCCATCGATTGTCGGATGTCTACCTGAAAGGCAGGTAGATGGTAGTGGT
AGAGAATTTTCTCCACGCGAGATCAGGCTTAGATAGTCATAGTCCTACTA
TTTTCCTTCTTTCCTTTCTCCCATCCTGCAGTTGCCTTTCCTTCTTCTGC
GCTCATCTCCTTTGCCATTTCTCCCTTGCCTACTTTCCCCTCACGCAGCG
GCTATTCCAAGCACTGTATGTTTTGTTGCTCCTGGCCTTCATCTACTGCA
CCGCGATGACACTGACCATGCCCTACTTCCTCGAGCACCAAGCCTTTTTC
CAGTCTGCCGTCTCCCCCTTCAGCTTTCTACTCACATATTTCGCAGACGT
CCAGTGTGTCGTCGCGGCGATTTCGGTGTTTGCGgtacgtttattggagc
ctggatggattgatttggatgatgttgtcggttttcaaacctcgctccta
accacccttttctatctttacacacagGGCCGACCAAACAAGACCCTCCT
CTTCCTTGGCTTCGGCGTTGGCGTTCTAAATCTCGTCGCGTGGCTCGGgt
atggaagtaaatgtaaaatcctattttacacgtcttttttaaatgttttc
tcttggtcttgttctttggtcttgctttcttggtcgcttcttgctgatct
tgtgctggtgcaaggaaactttagacggaaaagaaagggaggccacccac
atctccccgccccacactaacatgcggcactttgatcccttactccgcac
cttcatcacccatacgattacagCGTCTTCTATCAGTACACACCCTACCC
CGCCATTGGTTTCTGGTGGCTCCCTGTCACTGCTCTATTCGTCCTGGCCG
TTTCCCTACATGTGGATAGGGACTTGCGGAGATTGACGAAAGAGATTGAT
TTATTGGATAAGCTCAAGTATGATTATAAAAAGGTTTGAGGGAGGCGGGA
CGAAGATACGCACGTGTGTGTACATAGACAAATAAAGACAGCAAAATCGG
CGTTAAATGCAGAAAGAAATAGTGGAAAGGTAGTAAATCGTAGCCGCAAA
AAGCAGGTCGTAGCGAGCGGTCAATTGTGTCTCAGCAAGGCTTTTTG
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protein sequence of NO05G03100.1

>NO05G03100.1-protein ID=NO05G03100.1-protein|Name=NO05G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MSNRRRPRPVQDGDNEDAGDEDEGNQPDLLDEDEQARLIAELRRKGEEQS
QSTRRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLT
YFADVQCVVAAISVFAGRPNKTLLFLGFGVGVLNLVAWLGVFYQYTPYPA
IGFWWLPVTALFVLAVSLHVDRDLRRLTKEIDLLDKLKYDYKKV*
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protein sequence of NO05G03100.2

>NO05G03100.2-protein ID=NO05G03100.2-protein|Name=NO05G03100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MVVVENFLHARSGLDSHSPTIFLLSFLPSCSCLSFFCAHLLCHFSLAYFP
LTQRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLTY
FADVQCVVAAISVFAGRPNKTLLFLGFGVGVLNLVAWLGVFYQYTPYPAI
GFWWLPVTALFVLAVSLHVDRDLRRLTKEIDLLDKLKYDYKKV*
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protein sequence of NO05G03100.3

>NO05G03100.3-protein ID=NO05G03100.3-protein|Name=NO05G03100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MSNRRRPRPVQDGDNEDAGDEDEGNQPDLLDEDEQARLIAELRRKGEEQS
QSTRRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLT
YFADVQCVVAAISVFAVRLLEPGWIDLDDVVGFQTSLLTTLFYLYTQGRP
NKTLLFLGFGVGVLNLVAWLGYGSKCKILFYTSFLNVFSWSCSLVLLSWS
LLADLVLVQGNFRRKRKGGHPHLPAPH*
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Synonyms
Publications