NO05G03100.3, NO05G03100.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03100.3
Unique NameNO05G03100.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1094
Alignment locationchr5:801677..803073 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:801677..803073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03100.3 vs.
Match: EWM28088.1 (hypothetical protein Naga_100120g19 [Nannochloropsis gaditana])

HSP 1 Score: 83.6 bits (205), Expect = 8.800e-13
Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 0 
Query:    1 MSNRRRPRPVQDGDNEDAGDEDEGNQPDLLDEDEQARLIAELRRKGEEQSQSTRRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLTYFADVQCVVAAISVFAVR 119
            M +RRR  P Q G    A DEDE   P++LDE+EQA +I +LRRK EEQ++ TRR+F  L   LLL F YC A+T   P+ LEHQ   QSA +   FL TY  +   +V A  V A R
Sbjct:    1 MGSRRR-HPAQQGSC--AADEDEEVNPEILDEEEQATVIQDLRRKNEEQNRLTRRVFLGLCFFLLLIFAYCAAVTFKAPFKLEHQLHLQSATTSAGFLATYSMNAFAIVIASFVLAGR 115
The following BLAST results are available for this feature:
BLAST of NO05G03100.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28088.18.800e-1348.31hypothetical protein Naga_100120g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03100NO05G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03100.3NO05G03100.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03100.3.cds1NO05G03100.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03100.3.cds2NO05G03100.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03100.3 ID=NO05G03100.3|Name=NO05G03100.3|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp
GAAAAACACGGTCACAGGCACACGACATTAGCTATGAGCAACAGAAGGCG
ACCTCGGCCCGTGCAGGACGGGGATAATGAGGACGCGGGGGACGAGGACG
AGGGGAACCAGCCCGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAATC
GCAGAGCTGCGGCGGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGCGGCT
ATTCCAAGCACTGTATGTTTTGTTGCTCCTGGCCTTCATCTACTGCACCG
CGATGACACTGACCATGCCCTACTTCCTCGAGCACCAAGCCTTTTTCCAG
TCTGCCGTCTCCCCCTTCAGCTTTCTACTCACATATTTCGCAGACGTCCA
GTGTGTCGTCGCGGCGATTTCGGTGTTTGCGGTACGTTTATTGGAGCCTG
GATGGATTGATTTGGATGATGTTGTCGGTTTTCAAACCTCGCTCCTAACC
ACCCTTTTCTATCTTTACACACAGGGCCGACCAAACAAGACCCTCCTCTT
CCTTGGCTTCGGCGTTGGCGTTCTAAATCTCGTCGCGTGGCTCGGGTATG
GAAGTAAATGTAAAATCCTATTTTACACGTCTTTTTTAAATGTTTTCTCT
TGGTCTTGTTCTTTGGTCTTGCTTTCTTGGTCGCTTCTTGCTGATCTTGT
GCTGGTGCAAGGAAACTTTAGACGGAAAAGAAAGGGAGGCCACCCACATC
TCCCCGCCCCACACTAACATGCGGCACTTTGATCCCTTACTCCGCACCTT
CATCACCCATACGATTACAGCGTCTTCTATCAGTACACACCCTACCCCGC
CATTGGTTTCTGGTGGCTCCCTGTCACTGCTCTATTCGTCCTGGCCGTTT
CCCTACATGTGGATAGGGACTTGCGGAGATTGACGAAAGAGATTGATTTA
TTGGATAAGCTCAAGTATGATTATAAAAAGGTTTGAGGGAGGCGGGACGA
AGATACGCACGTGTGTGTACATAGACAAATAAAGACAGCAAAATCGGCGT
TAAATGCAGAAAGAAATAGTGGAAAGGTAGTAAATCGTAGCCGCAAAAAG
CAGGTCGTAGCGAGCGGTCAATTGTGTCTCAGCAAGGCTTTTTG
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protein sequence of NO05G03100.3

>NO05G03100.3-protein ID=NO05G03100.3-protein|Name=NO05G03100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MSNRRRPRPVQDGDNEDAGDEDEGNQPDLLDEDEQARLIAELRRKGEEQS
QSTRRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLT
YFADVQCVVAAISVFAVRLLEPGWIDLDDVVGFQTSLLTTLFYLYTQGRP
NKTLLFLGFGVGVLNLVAWLGYGSKCKILFYTSFLNVFSWSCSLVLLSWS
LLADLVLVQGNFRRKRKGGHPHLPAPH*
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mRNA from alignment at chr5:801677..803073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03100.3 ID=NO05G03100.3|Name=NO05G03100.3|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp|location=Sequence derived from alignment at chr5:801677..803073+ (Nannochloropsis oceanica)
GAAAAACACGGTCACAGGCACACGACATTAGCTATGAGCAACAGAAGGCG
ACCTCGGCCCGTGCAGGACGGGGATAATGAGGACGCGGGGGACGAGGACG
AGGGGAACCAGCCCGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAATC
GCAGAGCTGCGGCGGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGGTAAG
ATGGGTGGTCGGATAGAAGGACGGTGGGAGGGGCAAAGCATTTGGTGAGA
ATGTGCTGCAGCTGAGAGAGGATACGACAGGTCCGCACGCTATCCTTTTG
TTCCATCGATTGTCGGATGTCTACCTGAAAGGCAGGTAGATGGTAGTGGT
AGAGAATTTTCTCCACGCGAGATCAGGCTTAGATAGTCATAGTCCTACTA
TTTTCCTTCTTTCCTTTCTCCCATCCTGCAGTTGCCTTTCCTTCTTCTGC
GCTCATCTCCTTTGCCATTTCTCCCTTGCCTACTTTCCCCTCACGCAGCG
GCTATTCCAAGCACTGTATGTTTTGTTGCTCCTGGCCTTCATCTACTGCA
CCGCGATGACACTGACCATGCCCTACTTCCTCGAGCACCAAGCCTTTTTC
CAGTCTGCCGTCTCCCCCTTCAGCTTTCTACTCACATATTTCGCAGACGT
CCAGTGTGTCGTCGCGGCGATTTCGGTGTTTGCGGTACGTTTATTGGAGC
CTGGATGGATTGATTTGGATGATGTTGTCGGTTTTCAAACCTCGCTCCTA
ACCACCCTTTTCTATCTTTACACACAGGGCCGACCAAACAAGACCCTCCT
CTTCCTTGGCTTCGGCGTTGGCGTTCTAAATCTCGTCGCGTGGCTCGGGT
ATGGAAGTAAATGTAAAATCCTATTTTACACGTCTTTTTTAAATGTTTTC
TCTTGGTCTTGTTCTTTGGTCTTGCTTTCTTGGTCGCTTCTTGCTGATCT
TGTGCTGGTGCAAGGAAACTTTAGACGGAAAAGAAAGGGAGGCCACCCAC
ATCTCCCCGCCCCACACTAACATGCGGCACTTTGATCCCTTACTCCGCAC
CTTCATCACCCATACGATTACAGCGTCTTCTATCAGTACACACCCTACCC
CGCCATTGGTTTCTGGTGGCTCCCTGTCACTGCTCTATTCGTCCTGGCCG
TTTCCCTACATGTGGATAGGGACTTGCGGAGATTGACGAAAGAGATTGAT
TTATTGGATAAGCTCAAGTATGATTATAAAAAGGTTTGAGGGAGGCGGGA
CGAAGATACGCACGTGTGTGTACATAGACAAATAAAGACAGCAAAATCGG
CGTTAAATGCAGAAAGAAATAGTGGAAAGGTAGTAAATCGTAGCCGCAAA
AAGCAGGTCGTAGCGAGCGGTCAATTGTGTCTCAGCAAGGCTTTTTG
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Coding sequence (CDS) from alignment at chr5:801677..803073+

>NO05G03100.3 ID=NO05G03100.3|Name=NO05G03100.3|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr5:801677..803073+ (Nannochloropsis oceanica)
ATGAGCAACAGAAGGCGACCTCGGCCCGTGCAGGACGGGGATAATGAGGA
CGCGGGGGACGAGGACGAGGGGAACCAGCCCGACTTGCTGGACGAGGACG
AGCAGGCGAGGCTAATCGCAGAGCTGCGGCGGAAAGGGGAGGAGCAAAGT
CAGAGTACGCGGCGGCTATTCCAAGCACTGTATGTTTTGTTGCTCCTGGC
CTTCATCTACTGCACCGCGATGACACTGACCATGCCCTACTTCCTCGAGC
ACCAAGCCTTTTTCCAGTCTGCCGTCTCCCCCTTCAGCTTTCTACTCACA
TATTTCGCAGACGTCCAGTGTGTCGTCGCGGCGATTTCGGTGTTTGCGGT
ACGTTTATTGGAGCCTGGATGGATTGATTTGGATGATGTTGTCGGTTTTC
AAACCTCGCTCCTAACCACCCTTTTCTATCTTTACACACAGGGCCGACCA
AACAAGACCCTCCTCTTCCTTGGCTTCGGCGTTGGCGTTCTAAATCTCGT
CGCGTGGCTCGGGTATGGAAGTAAATGTAAAATCCTATTTTACACGTCTT
TTTTAAATGTTTTCTCTTGGTCTTGTTCTTTGGTCTTGCTTTCTTGGTCG
CTTCTTGCTGATCTTGTGCTGGTGCAAGGAAACTTTAGACGGAAAAGAAA
GGGAGGCCACCCACATCTCCCCGCCCCACACTAA
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Synonyms
Publications