NO05G03080, NO05G03080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03080 vs. NCBI_GenBank
Match: GAY02826.1 (DNAdirected RNA polymerase I putative [Pythium insidiosum]) HSP 1 Score: 122.5 bits (306), Expect = 1.200e-24 Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K+F +V R+V K +E++L LDINSE+Y ++Q D+ L T +GKPD Y TL+D+YDY YGKVF+ + GGN V+I SFGGLLM L G+Q+H+ I D+ IYC +RK Sbjct: 1 MATELFEDIFEVRQLNPEGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNDKFTFTLVSTLDLEGKPDDGIYNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---IVSIYASFGGLLMCLRGEQRHLHLIHNDTRIYCLLRK 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_014524997.1 (DNA Directed RNA polymerase 1 [Blastocystis sp. subtype 4] >KNB41554.1 DNA Directed RNA polymerase 1 [Blastocystis sp. subtype 4]) HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24 Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 0 Query: 5 LFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEY-QHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTK 153 LF++ F + S+NP K F +V R S + M++L+DIN++IY +K D+ L L T Y D +PDP Y + +TLMD Y+Y YGKVFK + +G K+ I IS+GGLLM L G+ KH+ ++ +YC +R K Sbjct: 7 LFEEIFEVRSVNPDGKAFEKVTRFAATSMTYNMEMLIDINTDIYPLKGNDKFTLALASTLYRDNRPDPGVYTDYSKENTLMDDYEYCMYGKVFKYQYKDNG---------KILIYISYGGLLMSLEGEMKHIEKVKYGDRVYCLIRTIK 146
BLAST of NO05G03080 vs. NCBI_GenBank
Match: OAO17787.1 (DNA-directed RNA polymerase I, II, and III subunit rpabc3 [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24 Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 0 Query: 5 LFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEY-QHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 LF++ F + S+NP K F +V R S + MD+L+DIN+++Y +K D L+ +T Y D +PDP Y + TLMD Y+Y YGKVFK + +G + I ISFGGLL+ L G+QKH+ +I +YC +R+ Sbjct: 7 LFEEIFEVKSVNPDGKAFDKVTRFAATSVTYGMDMLIDINTDVYPLKANDRFTLVFANTLYKDNRPDPGTYVDYSKEKTLMDDYEYCMYGKVFKYQFKDNG---------NILIYISFGGLLLSLEGEQKHIDQIKYGDRVYCLIRR 144
BLAST of NO05G03080 vs. NCBI_GenBank
Match: KUF86138.1 (DNA-directed RNA polymerases I [Phytophthora nicotianae]) HSP 1 Score: 121.3 bits (303), Expect = 2.700e-24 Identity = 66/150 (44.00%), Postives = 90/150 (60.00%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F LNP K+F +V R+V K +E++L LDINSE+Y ++Q ++ L L T +GKPD + TL+D+YDY YGKVF+ + GGN VAI SFGGLLM L G+Q+H+ I D+ IYC +RK Sbjct: 1 MATELFEDIFEXRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: OQR95362.1 (DNA-directed RNA polymerase I, II, and III subunit rpabc3 [Thraustotheca clavata]) HSP 1 Score: 121.3 bits (303), Expect = 2.700e-24 Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 MS +F+D F I LNP K+F RV RLV K +E++L+LDINSE++ +K ++ L T DGKPD + TL+D+YDY YGKVF+ + GGN VA+ SFGGLLM L GDQ H+ I + +YC +R+ Sbjct: 1 MSTQMFEDIFEIKQLNPEGKKFDRVTRLVCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLDGKPDDGIFDQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---TVAVFASFGGLLMCLRGDQSHLRNIHNGTRVYCLLRR 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_008608317.1 (hypothetical protein SDRG_04420 [Saprolegnia diclina VS20] >XP_012207407.1 hypothetical protein SPRG_12350 [Saprolegnia parasitica CBS 223.65] >EQC37990.1 hypothetical protein SDRG_04420 [Saprolegnia diclina VS20] >KDO21849.1 hypothetical protein SPRG_12350 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 120.2 bits (300), Expect = 5.900e-24 Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 MS +F+D F I LNP K+F RV RLV K +E++L+LDINSE++ +K ++ L T DGKPD + +L+D+YDY YGKVF+ + GGN VAI SFGGLLM L GDQ H+ I + +YC +R+ Sbjct: 1 MSTQMFEDIFEIKQLNPEGKKFDRVTRLVCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLDGKPDDGIFDQSGKPSLLDRYDYGMYGKVFQYDH------EGGN---TVAIFASFGGLLMCLRGDQSHLRNIHNGTRVYCLLRR 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: OEU20032.1 (RNA polymerase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 119.8 bits (299), Expect = 7.700e-24 Identity = 61/147 (41.50%), Postives = 88/147 (59.86%), Query Frame = 0 Query: 5 LFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKP-DPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 LF+D F +T+LNP +F RV+R+ T FE DLLLDIN EIY +++ D++ L+L T + DG P D Y TL D Y+YV +G+VF I K+ + +SFGGLLM+L+GDQ+H+A + D +Y ++K Sbjct: 9 LFEDIFEVTALNPDGYKFDRVNRIQAVGTTFECDLLLDINCEIYNLREADKVTLVLASTLHLDGSPADHLSYSPSTEPTLADNYEYVMHGRVFDISY---------KKDGTAVLALSFGGLLMRLTGDQRHLANVLPDMRLYLLLKK 146
BLAST of NO05G03080 vs. NCBI_GenBank
Match: OQR91354.1 (DNA-directed RNA polymerase I, II, and III subunit rpabc3 [Achlya hypogyna]) HSP 1 Score: 119.8 bits (299), Expect = 7.700e-24 Identity = 64/150 (42.67%), Postives = 88/150 (58.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 MS +F+D F I LNP K+F RV RLV K +E++L+LDINSE++ +K ++ L T DGKPD + +L+D+YDY YGKVF+ + GGN VA+ SFGGLLM L GDQ H+ I + +YC +R+ Sbjct: 1 MSTQMFEDIFEIKQLNPEGKKFDRVTRLVCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLDGKPDDGIFDQSGKPSLLDRYDYGMYGKVFQYDH------EGGN---TVAVFASFGGLLMCLRGDQSHLRNIHNGTRVYCLLRR 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_020601546.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Orbicella faveolata]) HSP 1 Score: 119.8 bits (299), Expect = 7.700e-24 Identity = 63/152 (41.45%), Postives = 97/152 (63.82%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQ-HDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEP-KVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + ++P K+F RV RL +S F+MDL+LD+N++IY V G++ L+L +T DG PD EY D S + DQ++YV YGKV++IE G GG + P ++A +SFGGLLM+L GD ++ + +D+ +Y ++K Sbjct: 1 MAGVLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDYGEKFRLVLANTLREDGTPDDGEYNPSDNSPSRADQFEYVMYGKVYRIE-----GDEGGVEAPTRLAAYVSFGGLLMRLQGDANNLHGMEVDNHVYLLIKK 147
BLAST of NO05G03080 vs. NCBI_GenBank
Match: EPZ33273.1 (Nucleic acid-binding domain-containing protein [Rozella allomycis CSF55]) HSP 1 Score: 118.6 bits (296), Expect = 1.700e-23 Identity = 58/139 (41.73%), Postives = 88/139 (63.31%), Query Frame = 0 Query: 2 SHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISI 141 S+ LFDD F + +NP K+F +V RL+GK+ ++MDL+LD+N+EIY + + L L+H+ DG PD + + L D YDYV +GK++K E VASG KVA+ IS+GGLLM+L G+ +H++ + + Sbjct: 3 SNILFDDYFEVRDINPEGKKFDKVSRLIGKTENYDMDLILDVNTEIYPMSIKERFHLSLSHSLSLDGTPDDGTFDPQANDMLADSYDYVMFGKIYKYEPVASG---------KVAVYISYGGLLMRLEGELRHLSFVCL 132 The following BLAST results are available for this feature:
BLAST of NO05G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03080 ID=NO05G03080|Name=NO05G03080|organism=Nannochloropsis oceanica|type=gene|length=2081bpback to top protein sequence of NO05G03080.1 >NO05G03080.1-protein ID=NO05G03080.1-protein|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bpback to top protein sequence of NO05G03080.2 >NO05G03080.2-protein ID=NO05G03080.2-protein|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=122bpback to top Synonyms
Publications
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