NO05G03060, NO05G03060 (gene) Nannochloropsis oceanica

Overview
NameNO05G03060
Unique NameNO05G03060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr5:793119..794591 +

Link to JBrowse

Properties
Property NameValue
DescriptionAp-3 complex subunit delta-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:793119..794591 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030123AP-3 adaptor complex
GO:0030117membrane coat
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0015031protein transport
GO:0006886intracellular protein transport
Homology
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BLAST of NO05G03060 vs. NCBI_GenBank
Match: EWM28142.1 (ap-3 complex subunit delta-1 [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-10
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 0 
Query:  212 PSSFSRLRFPLIKVAGLRVDYSLALDVDHHQLTVHFRVKYPSTSSSSS--AISDLRLYLRPLPPGFTSPLSIGGLSIGGGAGVMISKIAPGETAKAFLKLRFPLQVPPTTLTMP 324
            P S+  LR PL++  GLRV+YSL  D  H  +T+HFR K P+  SSS+  A+ DL+L L  LP G T  L     S G  AGV++  +A G   +      FP   PP+    P
Sbjct:  900 PGSYGGLRLPLLRTKGLRVEYSLTPDPSHQLVTLHFRFKAPAPPSSSAPLAVQDLQLTLTDLPEGVTPLLP----SSGATAGVVVGALAGGGRPRPPSSSAFPAPCPPSRAPSP 1009
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BLAST of NO05G03060 vs. NCBI_GenBank
Match: XP_005852335.1 (hypothetical protein NGA_0709900, partial [Nannochloropsis gaditana CCMP526] >EKU23492.1 hypothetical protein NGA_0709900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-7
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:  212 PSSFSRLRFPLIKVAGLRVDYSLALDVDHHQLTVHFRVKYPSTSSSSS--AISDLRLYLRPLPPGFTSPLSIGGLSIG 288
            P S+  LR PL++  GLRV+YSL  D  H  +T+HFR K P+  SSS+  A+ DL+L L  LP G T  L   G + G
Sbjct:   81 PGSYGGLRLPLLRTKGLRVEYSLTPDPSHQLVTLHFRFKAPAPPSSSAPLAVQDLQLTLTDLPEGVTPLLPSSGATAG 158
The following BLAST results are available for this feature:
BLAST of NO05G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28142.12.300e-1040.35ap-3 complex subunit delta-1 [Nannochloropsis gadi... [more]
XP_005852335.11.800e-746.15hypothetical protein NGA_0709900, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03060.1NO05G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03060.1NO05G03060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03060 ID=NO05G03060|Name=NO05G03060|organism=Nannochloropsis oceanica|type=gene|length=1473bp
ATGGAGCATCGGGTTCCTGCTGCTGCTGCTACTCCTACTCCTCCTCCTGC
CAAGGAAAAGAAGGGCAAAAAGAAGATGAAGGAGGGAGATAGGAGAAAGA
GAGGTGATAAAGGGGGGAAAGCAGCGGCGGGAGCATCCTCAAGAAGACAC
CACAAGGAGGTGAATGAGAGTAAATCGTCTGCTGCCGCTGCAGCTGATTC
AGCCAGCCCTTTGATTGACTTGAGAGATTTCGAGGCAGGAAACGACTCGC
CTCCCTCCTTCTTTTCTTCCTCCTCTATCTCTTCCTTTGCCAAGCCGAGG
AATGAAAGTAAGGATGTGTTACGGCTAAAGGCGGATGCGATGGACTTGTT
GCAATTCGGAAATAGCTCGCCTTTACATCCACCCACTACTACGGCTGGTG
GTGAAGCAGCTGCTACTGCCTGTGTCTTAAGAGGAGAGGAAAGAGGTGAA
GAGGGGGGACGGTTATTAGGAAGGGGAAGAGGAGAGAAAGTGACGGAGCA
ACGGCGGAAGGAGAAAGGTAGCGGTAGTAGCAGGAGGAGCAGCGGAAAGA
AGAATAGTAAAAGAGAAGAGTCATTGTTAGATCTGAATGGTGGAGGAGGA
GAAGGAGGCGAAGGAAATGGAGTAGCAGCGGGGCCAAGCAGCTTTTCAAG
GTTGCGTTTCCCCTTGATCAAGGTCGCAGGGCTCCGAGTCGATTACAGCC
TAGCCCTTGACGTGGACCACCATCAACTCACGGTGCACTTTCGTGTGAAA
TACCCGTCTACTTCTTCGTCCTCCTCCGCTATTTCTGACCTTCGGCTGTA
TCTCAGGCCCCTCCCTCCCGGCTTCACCTCCCCCCTCTCTATCGGAGGAC
TCTCCATCGGAGGAGGGGCCGGCGTGATGATCAGCAAGATCGCCCCGGGA
GAGACCGCCAAGGCCTTCCTCAAGCTCCGCTTCCCTCTCCAGGTCCCTCC
CACTACATTGACGATGCCCTTCGAGATGGATCACTTCAGAGGAAAAGAGG
GAAGGGAAGGAGGAGATCTTCTCGTTCCTACCAGCCCAGCCCGTGCAAAG
AAAGAGCGGGGGGAGTTGGTGCTGCCTGCTTGCGCATTTTTGTGTCCTGG
TCACCTATCGCCGTCTGGATTTATGTCGTTGCTTTCTCAGGGGCAGGTGC
AGTGGCAAGAGGCGACTGTGCGTCTACCCCTTCGAAGCCGCAGCAGTGGT
AGTAAAAAGCGTGGTGGTGCAGAGGGATTTGATGCGGTTGTTGCTCATCT
GGCCACATTTTTCCAGTCGCAGATTGTTGAAACCACCCCACCGGCAGCGG
CTGCATTGTATTCGACGGTGGTTGGTGGGAAGGAAGGGGGGCAGGAGCAT
CATGTCGCGCTGCTGGCCAAGTTTGTGGATGGGGGGGAGATGGTAGAGAT
TGCATTGAAGAGTGACATGCCTGGGTTGGCAGGAGTACTTGCGGCGGAGG
CGAAGGCTTTGTGTACATTTTAG
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protein sequence of NO05G03060.1

>NO05G03060.1-protein ID=NO05G03060.1-protein|Name=NO05G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MEHRVPAAAATPTPPPAKEKKGKKKMKEGDRRKRGDKGGKAAAGASSRRH
HKEVNESKSSAAAAADSASPLIDLRDFEAGNDSPPSFFSSSSISSFAKPR
NESKDVLRLKADAMDLLQFGNSSPLHPPTTTAGGEAAATACVLRGEERGE
EGGRLLGRGRGEKVTEQRRKEKGSGSSRRSSGKKNSKREESLLDLNGGGG
EGGEGNGVAAGPSSFSRLRFPLIKVAGLRVDYSLALDVDHHQLTVHFRVK
YPSTSSSSSAISDLRLYLRPLPPGFTSPLSIGGLSIGGGAGVMISKIAPG
ETAKAFLKLRFPLQVPPTTLTMPFEMDHFRGKEGREGGDLLVPTSPARAK
KERGELVLPACAFLCPGHLSPSGFMSLLSQGQVQWQEATVRLPLRSRSSG
SKKRGGAEGFDAVVAHLATFFQSQIVETTPPAAAALYSTVVGGKEGGQEH
HVALLAKFVDGGEMVEIALKSDMPGLAGVLAAEAKALCTF*
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Synonyms
Publications