NO05G03060.1, NO05G03060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03060.1
Unique NameNO05G03060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr5:793119..794591 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:793119..794591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03060.1 vs.
Match: EWM28142.1 (ap-3 complex subunit delta-1 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 3.700e-16
Identity = 91/273 (33.33%), Postives = 134/273 (49.08%), Query Frame = 0 
Query:   60 SAAAAADSASPLIDLRDFEAGNDSPPSFFSSSSISSFAKPRNESKDVLRLKADAMDLLQFGNSSPLHPPTTTAGGEAAATACVLRGEERGEEG-GRLL---GRGRGEKVTEQRRKEKGS-GSSRRSSGKKNSKREESLLDLNGGGGEGGEGNGVAAG--PSSFSRLRFPLIKVAGLRVDYSLALDVDHHQLTVHFRVKYPSTSSSSS--AISDLRLYLRPLPPGFTSPLSIGGLSIGGGAGVMISKIAPGETAKAFLKLRFPLQVPPTTLTMP 324
            +A    D A PLI+L D +AG  +PPS  SSS +    +P  +S +  R+K+D +DLL+F + +P  P       + +       G E    G GR+    G  R E   E ++    + G  RR   K   + +  + D++    +GG G+  + G  P S+  LR PL++  GLRV+YSL  D  H  +T+HFR K P+  SSS+  A+ DL+L L  LP G T  L     S G  AGV++  +A G   +      FP   PP+    P
Sbjct:  749 AAEPEEDLALPLIELGDTDAG--APPSLVSSSLL----EPGTDS-ETRRIKSDVLDLLRF-DLAPAQPGAARLPPDESFMVLASSGPEADRNGAGRVSVEEGTHRAEPGEEGKQAASAAPGEGRRRMRKARERAKVPVPDMDSNQEKGGSGSAESGGGAPGSYGGLRLPLLRTKGLRVEYSLTPDPSHQLVTLHFRFKAPAPPSSSAPLAVQDLQLTLTDLPEGVTPLLP----SSGATAGVVVGALAGGGRPRPPSSSAFPAPCPPSRAPSP 1009
The following BLAST results are available for this feature:
BLAST of NO05G03060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28142.13.700e-1633.33ap-3 complex subunit delta-1 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03060NO05G03060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03060.1NO05G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03060.1.cds1NO05G03060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03060.1 ID=NO05G03060.1|Name=NO05G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGGAGCATCGGGTTCCTGCTGCTGCTGCTACTCCTACTCCTCCTCCTGC
CAAGGAAAAGAAGGGCAAAAAGAAGATGAAGGAGGGAGATAGGAGAAAGA
GAGGTGATAAAGGGGGGAAAGCAGCGGCGGGAGCATCCTCAAGAAGACAC
CACAAGGAGGTGAATGAGAGTAAATCGTCTGCTGCCGCTGCAGCTGATTC
AGCCAGCCCTTTGATTGACTTGAGAGATTTCGAGGCAGGAAACGACTCGC
CTCCCTCCTTCTTTTCTTCCTCCTCTATCTCTTCCTTTGCCAAGCCGAGG
AATGAAAGTAAGGATGTGTTACGGCTAAAGGCGGATGCGATGGACTTGTT
GCAATTCGGAAATAGCTCGCCTTTACATCCACCCACTACTACGGCTGGTG
GTGAAGCAGCTGCTACTGCCTGTGTCTTAAGAGGAGAGGAAAGAGGTGAA
GAGGGGGGACGGTTATTAGGAAGGGGAAGAGGAGAGAAAGTGACGGAGCA
ACGGCGGAAGGAGAAAGGTAGCGGTAGTAGCAGGAGGAGCAGCGGAAAGA
AGAATAGTAAAAGAGAAGAGTCATTGTTAGATCTGAATGGTGGAGGAGGA
GAAGGAGGCGAAGGAAATGGAGTAGCAGCGGGGCCAAGCAGCTTTTCAAG
GTTGCGTTTCCCCTTGATCAAGGTCGCAGGGCTCCGAGTCGATTACAGCC
TAGCCCTTGACGTGGACCACCATCAACTCACGGTGCACTTTCGTGTGAAA
TACCCGTCTACTTCTTCGTCCTCCTCCGCTATTTCTGACCTTCGGCTGTA
TCTCAGGCCCCTCCCTCCCGGCTTCACCTCCCCCCTCTCTATCGGAGGAC
TCTCCATCGGAGGAGGGGCCGGCGTGATGATCAGCAAGATCGCCCCGGGA
GAGACCGCCAAGGCCTTCCTCAAGCTCCGCTTCCCTCTCCAGGTCCCTCC
CACTACATTGACGATGCCCTTCGAGATGGATCACTTCAGAGGAAAAGAGG
GAAGGGAAGGAGGAGATCTTCTCGTTCCTACCAGCCCAGCCCGTGCAAAG
AAAGAGCGGGGGGAGTTGGTGCTGCCTGCTTGCGCATTTTTGTGTCCTGG
TCACCTATCGCCGTCTGGATTTATGTCGTTGCTTTCTCAGGGGCAGGTGC
AGTGGCAAGAGGCGACTGTGCGTCTACCCCTTCGAAGCCGCAGCAGTGGT
AGTAAAAAGCGTGGTGGTGCAGAGGGATTTGATGCGGTTGTTGCTCATCT
GGCCACATTTTTCCAGTCGCAGATTGTTGAAACCACCCCACCGGCAGCGG
CTGCATTGTATTCGACGGTGGTTGGTGGGAAGGAAGGGGGGCAGGAGCAT
CATGTCGCGCTGCTGGCCAAGTTTGTGGATGGGGGGGAGATGGTAGAGAT
TGCATTGAAGAGTGACATGCCTGGGTTGGCAGGAGTACTTGCGGCGGAGG
CGAAGGCTTTGTGTACATTTTAG
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protein sequence of NO05G03060.1

>NO05G03060.1-protein ID=NO05G03060.1-protein|Name=NO05G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MEHRVPAAAATPTPPPAKEKKGKKKMKEGDRRKRGDKGGKAAAGASSRRH
HKEVNESKSSAAAAADSASPLIDLRDFEAGNDSPPSFFSSSSISSFAKPR
NESKDVLRLKADAMDLLQFGNSSPLHPPTTTAGGEAAATACVLRGEERGE
EGGRLLGRGRGEKVTEQRRKEKGSGSSRRSSGKKNSKREESLLDLNGGGG
EGGEGNGVAAGPSSFSRLRFPLIKVAGLRVDYSLALDVDHHQLTVHFRVK
YPSTSSSSSAISDLRLYLRPLPPGFTSPLSIGGLSIGGGAGVMISKIAPG
ETAKAFLKLRFPLQVPPTTLTMPFEMDHFRGKEGREGGDLLVPTSPARAK
KERGELVLPACAFLCPGHLSPSGFMSLLSQGQVQWQEATVRLPLRSRSSG
SKKRGGAEGFDAVVAHLATFFQSQIVETTPPAAAALYSTVVGGKEGGQEH
HVALLAKFVDGGEMVEIALKSDMPGLAGVLAAEAKALCTF*
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mRNA from alignment at chr5:793119..794591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03060.1 ID=NO05G03060.1|Name=NO05G03060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at chr5:793119..794591+ (Nannochloropsis oceanica)
ATGGAGCATCGGGTTCCTGCTGCTGCTGCTACTCCTACTCCTCCTCCTGC
CAAGGAAAAGAAGGGCAAAAAGAAGATGAAGGAGGGAGATAGGAGAAAGA
GAGGTGATAAAGGGGGGAAAGCAGCGGCGGGAGCATCCTCAAGAAGACAC
CACAAGGAGGTGAATGAGAGTAAATCGTCTGCTGCCGCTGCAGCTGATTC
AGCCAGCCCTTTGATTGACTTGAGAGATTTCGAGGCAGGAAACGACTCGC
CTCCCTCCTTCTTTTCTTCCTCCTCTATCTCTTCCTTTGCCAAGCCGAGG
AATGAAAGTAAGGATGTGTTACGGCTAAAGGCGGATGCGATGGACTTGTT
GCAATTCGGAAATAGCTCGCCTTTACATCCACCCACTACTACGGCTGGTG
GTGAAGCAGCTGCTACTGCCTGTGTCTTAAGAGGAGAGGAAAGAGGTGAA
GAGGGGGGACGGTTATTAGGAAGGGGAAGAGGAGAGAAAGTGACGGAGCA
ACGGCGGAAGGAGAAAGGTAGCGGTAGTAGCAGGAGGAGCAGCGGAAAGA
AGAATAGTAAAAGAGAAGAGTCATTGTTAGATCTGAATGGTGGAGGAGGA
GAAGGAGGCGAAGGAAATGGAGTAGCAGCGGGGCCAAGCAGCTTTTCAAG
GTTGCGTTTCCCCTTGATCAAGGTCGCAGGGCTCCGAGTCGATTACAGCC
TAGCCCTTGACGTGGACCACCATCAACTCACGGTGCACTTTCGTGTGAAA
TACCCGTCTACTTCTTCGTCCTCCTCCGCTATTTCTGACCTTCGGCTGTA
TCTCAGGCCCCTCCCTCCCGGCTTCACCTCCCCCCTCTCTATCGGAGGAC
TCTCCATCGGAGGAGGGGCCGGCGTGATGATCAGCAAGATCGCCCCGGGA
GAGACCGCCAAGGCCTTCCTCAAGCTCCGCTTCCCTCTCCAGGTCCCTCC
CACTACATTGACGATGCCCTTCGAGATGGATCACTTCAGAGGAAAAGAGG
GAAGGGAAGGAGGAGATCTTCTCGTTCCTACCAGCCCAGCCCGTGCAAAG
AAAGAGCGGGGGGAGTTGGTGCTGCCTGCTTGCGCATTTTTGTGTCCTGG
TCACCTATCGCCGTCTGGATTTATGTCGTTGCTTTCTCAGGGGCAGGTGC
AGTGGCAAGAGGCGACTGTGCGTCTACCCCTTCGAAGCCGCAGCAGTGGT
AGTAAAAAGCGTGGTGGTGCAGAGGGATTTGATGCGGTTGTTGCTCATCT
GGCCACATTTTTCCAGTCGCAGATTGTTGAAACCACCCCACCGGCAGCGG
CTGCATTGTATTCGACGGTGGTTGGTGGGAAGGAAGGGGGGCAGGAGCAT
CATGTCGCGCTGCTGGCCAAGTTTGTGGATGGGGGGGAGATGGTAGAGAT
TGCATTGAAGAGTGACATGCCTGGGTTGGCAGGAGTACTTGCGGCGGAGG
CGAAGGCTTTGTGTACATTTTAG
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Coding sequence (CDS) from alignment at chr5:793119..794591+

>NO05G03060.1 ID=NO05G03060.1|Name=NO05G03060.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr5:793119..794591+ (Nannochloropsis oceanica)
ATGGAGCATCGGGTTCCTGCTGCTGCTGCTACTCCTACTCCTCCTCCTGC
CAAGGAAAAGAAGGGCAAAAAGAAGATGAAGGAGGGAGATAGGAGAAAGA
GAGGTGATAAAGGGGGGAAAGCAGCGGCGGGAGCATCCTCAAGAAGACAC
CACAAGGAGGTGAATGAGAGTAAATCGTCTGCTGCCGCTGCAGCTGATTC
AGCCAGCCCTTTGATTGACTTGAGAGATTTCGAGGCAGGAAACGACTCGC
CTCCCTCCTTCTTTTCTTCCTCCTCTATCTCTTCCTTTGCCAAGCCGAGG
AATGAAAGTAAGGATGTGTTACGGCTAAAGGCGGATGCGATGGACTTGTT
GCAATTCGGAAATAGCTCGCCTTTACATCCACCCACTACTACGGCTGGTG
GTGAAGCAGCTGCTACTGCCTGTGTCTTAAGAGGAGAGGAAAGAGGTGAA
GAGGGGGGACGGTTATTAGGAAGGGGAAGAGGAGAGAAAGTGACGGAGCA
ACGGCGGAAGGAGAAAGGTAGCGGTAGTAGCAGGAGGAGCAGCGGAAAGA
AGAATAGTAAAAGAGAAGAGTCATTGTTAGATCTGAATGGTGGAGGAGGA
GAAGGAGGCGAAGGAAATGGAGTAGCAGCGGGGCCAAGCAGCTTTTCAAG
GTTGCGTTTCCCCTTGATCAAGGTCGCAGGGCTCCGAGTCGATTACAGCC
TAGCCCTTGACGTGGACCACCATCAACTCACGGTGCACTTTCGTGTGAAA
TACCCGTCTACTTCTTCGTCCTCCTCCGCTATTTCTGACCTTCGGCTGTA
TCTCAGGCCCCTCCCTCCCGGCTTCACCTCCCCCCTCTCTATCGGAGGAC
TCTCCATCGGAGGAGGGGCCGGCGTGATGATCAGCAAGATCGCCCCGGGA
GAGACCGCCAAGGCCTTCCTCAAGCTCCGCTTCCCTCTCCAGGTCCCTCC
CACTACATTGACGATGCCCTTCGAGATGGATCACTTCAGAGGAAAAGAGG
GAAGGGAAGGAGGAGATCTTCTCGTTCCTACCAGCCCAGCCCGTGCAAAG
AAAGAGCGGGGGGAGTTGGTGCTGCCTGCTTGCGCATTTTTGTGTCCTGG
TCACCTATCGCCGTCTGGATTTATGTCGTTGCTTTCTCAGGGGCAGGTGC
AGTGGCAAGAGGCGACTGTGCGTCTACCCCTTCGAAGCCGCAGCAGTGGT
AGTAAAAAGCGTGGTGGTGCAGAGGGATTTGATGCGGTTGTTGCTCATCT
GGCCACATTTTTCCAGTCGCAGATTGTTGAAACCACCCCACCGGCAGCGG
CTGCATTGTATTCGACGGTGGTTGGTGGGAAGGAAGGGGGGCAGGAGCAT
CATGTCGCGCTGCTGGCCAAGTTTGTGGATGGGGGGGAGATGGTAGAGAT
TGCATTGAAGAGTGACATGCCTGGGTTGGCAGGAGTACTTGCGGCGGAGG
CGAAGGCTTTGTGTACATTTTAG
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Synonyms
Publications