NO05G02800, NO05G02800 (gene) Nannochloropsis oceanica

Overview
NameNO05G02800
Unique NameNO05G02800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr5:734031..734924 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:734031..734924 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
BLAST of NO05G02800 vs. NCBI_GenBank
Match: EWM28237.1 (hypothetical protein Naga_100004g178 [Nannochloropsis gaditana])

HSP 1 Score: 307.4 bits (786), Expect = 4.200e-80
Identity = 163/254 (64.17%), Postives = 190/254 (74.80%), Query Frame = 0
Query:    1 MRRGRLLLLACITTALVSLSVTNAFVLKPLGSSTNYRSSFCFPTKPHRSNGASSS-LLPQHLTVGGEDPSGLDLQSVWNTATGVGALVVGALVLADIVDTWPRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASRYTWTLANTDILDPTLSNGQLPEELLFYGGLLRKSTLLALVNEPRAGYDLNVVAVVSDRDVAYVAERNIYKGEELMTDYGPMYNRRHYR 254
            MRR  LL + C     V++S   AFVL P    ++  ++ C  T P R    SSS  L + LTVGGEDP  + LQS W   T VGALVVGALVLA++V  WPRG VN +LVEA  STLGPQAGRGLFA  NIP+DT IG FPGV+S R +W+  KDSEEAA+ A RYTW+LA  D+LDPTLSNG+LP+ L+F+GGLLR  TLLALVNEPRAG DLNVVAVVS+RDVAYVAER+I+ GEELMTDYGP Y+RRHYR
Sbjct:    1 MRRHELLYVLC----TVAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: GAX28667.1 (hypothetical protein FisN_33Hh059 [Fistulifera solaris])

HSP 1 Score: 81.6 bits (200), Expect = 3.800e-12
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = 0
Query:   77 WNTATGVGALVVGALVLADIVDTWPRGSV--NTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVR---ASRYTWTLA-NTDILDPTLSNGQL------PEELLFYGGLLRKSTLLALVNEPRAGYDLNVVA--VVSDRDVAYVAERNIYKGEELMTDYGPMYNRRHYR 254
            W+   G G     +LV   I+D  PRG++     L+E   S +   AG GLF  +++   T +G +PG++      ++ +  ++ A++      Y W  + N+ ++DPT S G L      P     +G     +T L  +NEP  G D+NVV   V+S+R V    ERN+  GEEL  DYGP Y+R  YR
Sbjct:   59 WSLRLGTGLFTYASLVA--ILDR-PRGTLLAPETLLEVRPSAV---AGLGLFVTQDLGAGTVLGTYPGIVVA----MNDRRVQQKAIQYPECQTYIWRFSDNSALIDPTNSVGTLDNFCSSPTAPFLFG----VATTLCRINEPPKGKDVNVVTEEVLSERKVVLRLERNVVAGEELFMDYGPQYDRSAYR 235          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: GAX73149.1 (hypothetical protein CEUSTIGMA_g602.t1 [Chlamydomonas eustigma])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 0
Query:   81 TGVGALVVGALVLADIVDTW---PRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASR------YTWTLANTDILDPTLSNGQLPEELLFYGGLLRKSTLLAL--VNEPRAGYDLNVVAV----VSDRDVAYVAERNIYKGEELMTDYGPMYNRRHY 253
            + V   +  AL++A I++ +   PRG     LV+ A S +   AG+GLFA  +IP  T +G +PG+          +DS +  ++A R      Y +T  +   LDPT ++G+ P      G +    T +AL  VNEP  G      ++      DR++ +V  R+I +GEE++ DYG  YNR  Y
Sbjct:   38 SSVSLCMSAALLVAIIIEVYKNRPRGWARNDLVQIATSQV---AGKGLFAKRDIPSSTVLGAYPGL---------PRDSYDMGLKAHRCPQVEQYVFTTGSGVYLDPTDASGEAPSPYPSPGLMWPFPTQIALAFVNEPPEGSCGPNCSIEDGGQDDREILFVTSRDIAEGEEILIDYGQFYNRNGY 212          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: GAX23165.1 (hypothetical protein FisN_33Lh059 [Fistulifera solaris])

HSP 1 Score: 78.2 bits (191), Expect = 4.200e-11
Identity = 63/185 (34.05%), Postives = 92/185 (49.73%), Query Frame = 0
Query:   77 WNTATGVGALVVGALVLADIVDTWPRGSV--NTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPG-VISRRKNWVSTKDSEEAAVRASRYTWTLA-NTDILDPTLSNGQLPEELLFYGG--LLRKSTLLALVNEPRAGYDLNVVA--VVSDRDVAYVAERNIYKGEELMTDYGPMYNRRHYR 254
            W+   G G     +LV   ++D  PRG++     L+E   S +   AG GLF  +++   T +G +PG VIS     V  K ++        Y W  + N+ ++DPT   G L +         L R +T L  +NEP  G D+NVV   V+++R V    ER++  GEEL  DYGP Y+R  YR
Sbjct:    4 WSLRLGTGLFTYASLVA--LLDR-PRGTLLAPESLLEVRPSAV---AGLGLFVTQDLRAGTVLGTYPGLVISLNDPRVQQKANQYP--ECQTYIWRFSDNSALIDPTNGVGTLDDFCRSPTAPFLFRVATTLCRINEPPKGKDVNVVTDEVLNERIVVLRLERDVVAGEELFMDYGPQYDRSAYR 180          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: XP_002184309.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44058.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.0 bits (188), Expect = 9.300e-11
Identity = 60/188 (31.91%), Postives = 90/188 (47.87%), Query Frame = 0
Query:   82 GVGALVVGALVLADIVDTWPRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVI-SRRKNWVSTKDSEEAAVRASRYTWTLA-NTDILDPTLS-----------NGQLPEELLFYGGLLRKS--TLLALVNEPRAGYDLNVVA--VVSDRDVAYVAERNIYKGEELMTDYGPMYNRRHY 253
            G+ A+     ++A +     R  V ++ V+  QST+ P AG GLFA  ++ + T +G +PGV+    +N    +D          Y W  + N  ++DPT +           N  +P  L  +  LL  S  T L  +NEP  G D+NVV    +  R V +  ER++ KGEEL  DYG  Y+R  Y
Sbjct:  102 GISAMASYVGIVAYVDRPRGRVGVGSREVDVRQSTV-PGAGLGLFAATDLERGTVLGTYPGVVLPLSQNLPKLRDFP----ACEGYIWRFSDNKFVIDPTNAVGTLESDCVGGNPSMPGSLWLFTNLLEMSTPTTLCRINEPPIGLDVNVVTNEDLQGRTVTFALERDVAKGEELFIDYGLYYDRSLY 284          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: OEU09837.1 (hypothetical protein FRACYDRAFT_194758 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.3 bits (181), Expect = 6.000e-10
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 0
Query:  117 LGPQ--AGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASRYTWTLA-NTDILDPT-LSNGQL--------PEEL---LFYGGLLRK------STLLALVNEPRAGYDLNVVAV--VSDRDVAYVAERNIYKGEELMTDYGPMYNRRHYR 254
            +GP   AG GLF  +++PK T +G +PGV+   +    +   +      + Y W    N  I+DPT    G+L        P +L   L +  +L        ST L  +NEP  GYD+NV+    + +R V +  ER++  GEEL  DYG  Y+R  Y+
Sbjct:  106 VGPSKTAGLGLFVTQSLPKGTILGSYPGVVIPLQQHSESNKVKTLFPECTEYIWRFTDNQYIIDPTNHQTGELDDYCAGGNPSQLFSCLLFNNILPPLSIYSCSTALCRINEPSKGYDVNVITEEDLINRKVIFTLERDVIAGEELYIDYGLTYDRTKYQ 265          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: XP_002286452.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96093.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-9
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 0
Query:  101 PRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASRYTWTLA-NTDILDPTLSNGQLPE------------ELLF--YGGLLRKSTLLALVNEPRAGYDLNVVAVVSD---RDVAYVAERNIYKGEELMTDYGPMYNRRHY 253
            PRG+++       Q +  P AG GLFA E++PK T +G +PGV+    ++   K  +  A  +  Y+W L  N+ ++DPT   G++ +             ++F  +   L+  T L  +NEP  GY    V    D   ++V +   R++  GEEL  DYG  Y+R  Y
Sbjct:  109 PRGNLSIPNSLLIQQSRVPNAGLGLFATESLPKGTILGTYPGVLRPASSFYDGKGFQFPA--SVGYSWRLTDNSYVIDPTDEQGEIQDYCVGGSWEVPLSNVIFKTFLKFLKVPTALTRINEPPIGYGGCNVEAREDLVKKEVVFRLCRDVTAGEELFLDYGFYYDRSQY 276          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: XP_005767042.1 (hypothetical protein EMIHUDRAFT_96318 [Emiliania huxleyi CCMP1516] >EOD14613.1 hypothetical protein EMIHUDRAFT_96318 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.4 bits (176), Expect = 2.300e-9
Identity = 59/205 (28.78%), Postives = 82/205 (40.00%), Query Frame = 0
Query:   91 LVLADIVDTWPRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASRYTWTLANTDILDPTLSNGQLPE-----------------------------------------ELLFYGGLLR--KSTLLALVNEPRAGYDLNVVAVVSDRDVAYVAERNIYKGEELMTDYGPMYNRRHY 253
            L+ A + +  PRG +   L+E   S L   AGRG FA   +P  T +G +PG +     + +           + Y W + +   LDPT   G+L E                                         E L  G +      T LAL+NEP  G D+NV   V   DV + AER++ +GEEL  DYG  Y+R  Y
Sbjct:   37 LLAAQLRERRPRGWLAPGLLEVRPS-LVAGAGRGCFAATALPSGTVLGAYPGRLRSAAEYAT--KLRVVGPHVAEYCWRIGDVAALDPTDGEGRLYEARGTLTHQGSPLLSAPSAQHSMDALSVRWQAPGVPLIEGMPESLRTGAMANWCTPTTLALLNEPGPGGDVNVGVAVEGADVVFSAERDVRRGEELYLDYGQDYDRSGY 238          
BLAST of NO05G02800 vs. NCBI_GenBank
Match: PNW77585.1 (hypothetical protein CHLRE_10g443100v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 69.3 bits (168), Expect = 1.900e-8
Identity = 56/159 (35.22%), Postives = 75/159 (47.17%), Query Frame = 0
Query:  101 PRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASRYTWTLANTDILDPTLSNGQ---LPEELLFYGGLLRKSTLLALVNEPRAGYDLNVVAVVSD----RDVAYVAERNIYKGEELMTDYGPMYNRRHY 253
            PRG     L+E   S +   AG+GLFA  +IP  T +G +PG   R ++        E A  AS Y +   +   LDPT + GQ    P   LF+   L     L   NEP  G  L   A V D     D+ +VA R+I  G E++ DYG  Y+R +Y
Sbjct:  269 PRGWSRKDLLEVRASAI---AGKGLFATASIPSGTVLGAYPG---RLRSGAEMLAKCEYAPMASSYAFRTGDGSFLDPTDTTGQPSPYPTPGLFWP--LPSDVSLCFANEPPKG-SLGTNASVEDGSAAGDLHFVACRDIPAGAEILIDYGISYDRSNY 418          
The following BLAST results are available for this feature:
BLAST of NO05G02800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM28237.14.200e-8064.17hypothetical protein Naga_100004g178 [Nannochlorop... [more]
GAX28667.13.800e-1232.98hypothetical protein FisN_33Hh059 [Fistulifera sol... [more]
GAX73149.11.100e-1132.09hypothetical protein CEUSTIGMA_g602.t1 [Chlamydomo... [more]
GAX23165.14.200e-1134.05hypothetical protein FisN_33Lh059 [Fistulifera sol... [more]
XP_002184309.19.300e-1131.91predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU09837.16.000e-1032.50hypothetical protein FRACYDRAFT_194758 [Fragilario... [more]
XP_002286452.11.300e-930.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005767042.12.300e-928.78hypothetical protein EMIHUDRAFT_96318 [Emiliania h... [more]
PNW77585.11.900e-835.22hypothetical protein CHLRE_10g443100v5 [Chlamydomo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003614NSK003614Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02800.1NO05G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584504gene_3083Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g178gene2422Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02800.1NO05G02800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02800 ID=NO05G02800|Name=NO05G02800|organism=Nannochloropsis oceanica|type=gene|length=894bp
ATGCGTCGTGGGCGGCTCCTGCTGCTAGCCTGCATTACGACCGCCCTGGT
CTCGTTGTCAGTGACGAATGCTTTTGTCCTGAAACCACTTGGCTCGAGCA
CCAATTATCGGTCCAGTTTCTGCTTCCCCACCAAGCCTCATCGGTCTAAC
GGTGCGTCATCGTCGTTGCTACCTCAGCACCTGACGGTGGGCGGTGAGGA
CCCAAGTGGTCTCGATTTACAAAGCGTGTGGAATACTGCCACTGGTGTCG
GCGCACTCGTGGTGGGTGCATTGGTACTAGCGGATATTGTTGACACCTGG
CCCCGAGGTTCGGTTAACACGAAGCTAGTGGAGGCCGCACAATCCACTTT
AGGTCCTCAAGCAGGGCGAGGACTCTTTGCTCTCGAAAACATTCCCAAGG
ACACAACCATTGGTAAATTTCCTGGTGTCATCTCGCGACGCAAAAACTGG
GTTTCAACAAAGGATAGTGAAGAGGCAGCTGTCCGGGCAAGCAGATACAC
ATGGACGCTTGCCAACACGGATATTCTCGACCCCACGCTGAGTAATGGAC
AGTTGCCCGAGGAGCTACTCTTCTATGGAGGCCTGCTGCGTAAGTCTACG
CTTCTCGCCTTGGTTAACGAGCCCCGCGCGGGGTATGACTTGAATGTTGT
CGCTGTTGTGAGCGATCGAGATGTGGCGTACGTTGCAGAACGAAACATTT
ATAAAGgtgcgtcaagataccttctctatctggtatcatagtatcgtgtt
ataaaggcaggtaatctttcgcgctttcataagcagtgtgagtaattctc
atacccttcctcctctcccatccttatccctccagGTGAAGAGCTAATGA
CTGACTACGGCCCCATGTACAACAGACGGCACTACCGCCAGTAA
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protein sequence of NO05G02800.1

>NO05G02800.1-protein ID=NO05G02800.1-protein|Name=NO05G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MRRGRLLLLACITTALVSLSVTNAFVLKPLGSSTNYRSSFCFPTKPHRSN
GASSSLLPQHLTVGGEDPSGLDLQSVWNTATGVGALVVGALVLADIVDTW
PRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNW
VSTKDSEEAAVRASRYTWTLANTDILDPTLSNGQLPEELLFYGGLLRKST
LLALVNEPRAGYDLNVVAVVSDRDVAYVAERNIYKGEELMTDYGPMYNRR
HYRQ*
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Synonyms
Publications