NO05G02800.1, NO05G02800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02800.1
Unique NameNO05G02800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr5:734031..734924 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:734031..734924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02800.1 vs.
Match: EWM28237.1 (hypothetical protein Naga_100004g178 [Nannochloropsis gaditana])

HSP 1 Score: 307.4 bits (786), Expect = 4.200e-80
Identity = 163/254 (64.17%), Postives = 190/254 (74.80%), Query Frame = 0 
Query:    1 MRRGRLLLLACITTALVSLSVTNAFVLKPLGSSTNYRSSFCFPTKPHRSNGASSS-LLPQHLTVGGEDPSGLDLQSVWNTATGVGALVVGALVLADIVDTWPRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNWVSTKDSEEAAVRASRYTWTLANTDILDPTLSNGQLPEELLFYGGLLRKSTLLALVNEPRAGYDLNVVAVVSDRDVAYVAERNIYKGEELMTDYGPMYNRRHYR 254
            MRR  LL + C     V++S   AFVL P    ++  ++ C  T P R    SSS  L + LTVGGEDP  + LQS W   T VGALVVGALVLA++V  WPRG VN +LVEA  STLGPQAGRGLFA  NIP+DT IG FPGV+S R +W+  KDSEEAA+ A RYTW+LA  D+LDPTLSNG+LP+ L+F+GGLLR  TLLALVNEPRAG DLNVVAVVS+RDVAYVAER+I+ GEELMTDYGP Y+RRHYR
Sbjct:    1 MRRHELLYVLCT----VAVSTIQAFVLTPSALRSSIVNTPCRTTAPSRFVTTSSSPWLVRQLTVGGEDPGAVTLQSTWQLVTNVGALVVGALVLAEVVQDWPRGWVNRQLVEAGPSTLGPQAGRGLFAARNIPRDTVIGNFPGVVSSRASWLGRKDSEEAALLARRYTWSLATGDVLDPTLSNGELPDTLIFFGGLLRIPTLLALVNEPRAGMDLNVVAVVSERDVAYVAERDIFAGEELMTDYGPAYDRRHYR 250
The following BLAST results are available for this feature:
BLAST of NO05G02800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28237.14.200e-8064.17hypothetical protein Naga_100004g178 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02800NO05G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02800.1NO05G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02800.1.cds1NO05G02800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02800.1.cds2NO05G02800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02800.1 ID=NO05G02800.1|Name=NO05G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ATGCGTCGTGGGCGGCTCCTGCTGCTAGCCTGCATTACGACCGCCCTGGT
CTCGTTGTCAGTGACGAATGCTTTTGTCCTGAAACCACTTGGCTCGAGCA
CCAATTATCGGTCCAGTTTCTGCTTCCCCACCAAGCCTCATCGGTCTAAC
GGTGCGTCATCGTCGTTGCTACCTCAGCACCTGACGGTGGGCGGTGAGGA
CCCAAGTGGTCTCGATTTACAAAGCGTGTGGAATACTGCCACTGGTGTCG
GCGCACTCGTGGTGGGTGCATTGGTACTAGCGGATATTGTTGACACCTGG
CCCCGAGGTTCGGTTAACACGAAGCTAGTGGAGGCCGCACAATCCACTTT
AGGTCCTCAAGCAGGGCGAGGACTCTTTGCTCTCGAAAACATTCCCAAGG
ACACAACCATTGGTAAATTTCCTGGTGTCATCTCGCGACGCAAAAACTGG
GTTTCAACAAAGGATAGTGAAGAGGCAGCTGTCCGGGCAAGCAGATACAC
ATGGACGCTTGCCAACACGGATATTCTCGACCCCACGCTGAGTAATGGAC
AGTTGCCCGAGGAGCTACTCTTCTATGGAGGCCTGCTGCGTAAGTCTACG
CTTCTCGCCTTGGTTAACGAGCCCCGCGCGGGGTATGACTTGAATGTTGT
CGCTGTTGTGAGCGATCGAGATGTGGCGTACGTTGCAGAACGAAACATTT
ATAAAGGTGAAGAGCTAATGACTGACTACGGCCCCATGTACAACAGACGG
CACTACCGCCAGTAA
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protein sequence of NO05G02800.1

>NO05G02800.1-protein ID=NO05G02800.1-protein|Name=NO05G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MRRGRLLLLACITTALVSLSVTNAFVLKPLGSSTNYRSSFCFPTKPHRSN
GASSSLLPQHLTVGGEDPSGLDLQSVWNTATGVGALVVGALVLADIVDTW
PRGSVNTKLVEAAQSTLGPQAGRGLFALENIPKDTTIGKFPGVISRRKNW
VSTKDSEEAAVRASRYTWTLANTDILDPTLSNGQLPEELLFYGGLLRKST
LLALVNEPRAGYDLNVVAVVSDRDVAYVAERNIYKGEELMTDYGPMYNRR
HYRQ*
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mRNA from alignment at chr5:734031..734924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02800.1 ID=NO05G02800.1|Name=NO05G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at chr5:734031..734924+ (Nannochloropsis oceanica)
ATGCGTCGTGGGCGGCTCCTGCTGCTAGCCTGCATTACGACCGCCCTGGT
CTCGTTGTCAGTGACGAATGCTTTTGTCCTGAAACCACTTGGCTCGAGCA
CCAATTATCGGTCCAGTTTCTGCTTCCCCACCAAGCCTCATCGGTCTAAC
GGTGCGTCATCGTCGTTGCTACCTCAGCACCTGACGGTGGGCGGTGAGGA
CCCAAGTGGTCTCGATTTACAAAGCGTGTGGAATACTGCCACTGGTGTCG
GCGCACTCGTGGTGGGTGCATTGGTACTAGCGGATATTGTTGACACCTGG
CCCCGAGGTTCGGTTAACACGAAGCTAGTGGAGGCCGCACAATCCACTTT
AGGTCCTCAAGCAGGGCGAGGACTCTTTGCTCTCGAAAACATTCCCAAGG
ACACAACCATTGGTAAATTTCCTGGTGTCATCTCGCGACGCAAAAACTGG
GTTTCAACAAAGGATAGTGAAGAGGCAGCTGTCCGGGCAAGCAGATACAC
ATGGACGCTTGCCAACACGGATATTCTCGACCCCACGCTGAGTAATGGAC
AGTTGCCCGAGGAGCTACTCTTCTATGGAGGCCTGCTGCGTAAGTCTACG
CTTCTCGCCTTGGTTAACGAGCCCCGCGCGGGGTATGACTTGAATGTTGT
CGCTGTTGTGAGCGATCGAGATGTGGCGTACGTTGCAGAACGAAACATTT
ATAAAGGTGCGTCAAGATACCTTCTCTATCTGGTATCATAGTATCGTGTT
ATAAAGGCAGGTAATCTTTCGCGCTTTCATAAGCAGTGTGAGTAATTCTC
ATACCCTTCCTCCTCTCCCATCCTTATCCCTCCAGGTGAAGAGCTAATGA
CTGACTACGGCCCCATGTACAACAGACGGCACTACCGCCAGTAA
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Coding sequence (CDS) from alignment at chr5:734031..734924+

>NO05G02800.1 ID=NO05G02800.1|Name=NO05G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr5:734031..734924+ (Nannochloropsis oceanica)
ATGCGTCGTGGGCGGCTCCTGCTGCTAGCCTGCATTACGACCGCCCTGGT
CTCGTTGTCAGTGACGAATGCTTTTGTCCTGAAACCACTTGGCTCGAGCA
CCAATTATCGGTCCAGTTTCTGCTTCCCCACCAAGCCTCATCGGTCTAAC
GGTGCGTCATCGTCGTTGCTACCTCAGCACCTGACGGTGGGCGGTGAGGA
CCCAAGTGGTCTCGATTTACAAAGCGTGTGGAATACTGCCACTGGTGTCG
GCGCACTCGTGGTGGGTGCATTGGTACTAGCGGATATTGTTGACACCTGG
CCCCGAGGTTCGGTTAACACGAAGCTAGTGGAGGCCGCACAATCCACTTT
AGGTCCTCAAGCAGGGCGAGGACTCTTTGCTCTCGAAAACATTCCCAAGG
ACACAACCATTGGTAAATTTCCTGGTGTCATCTCGCGACGCAAAAACTGG
GTTTCAACAAAGGATAGTGAAGAGGCAGCTGTCCGGGCAAGCAGATACAC
ATGGACGCTTGCCAACACGGATATTCTCGACCCCACGCTGAGTAATGGAC
AGTTGCCCGAGGAGCTACTCTTCTATGGAGGCCTGCTGCGTAAGTCTACG
CTTCTCGCCTTGGTTAACGAGCCCCGCGCGGGGTATGACTTGAATGTTGT
CGCTGTTGTGAGCGATCGAGATGTGGCGTACGTTGCAGAACGAAACATTT
ATAAAGGTGAAGAGCTAATGACTGACTACGGCCCCATGTACAACAGACGG
CACTACCGCCAGTAA
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Synonyms
Publications