NO05G02470, NO05G02470 (gene) Nannochloropsis oceanica

Overview
NameNO05G02470
Unique NameNO05G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr5:655189..656070 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:655189..656070 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO05G02470 vs. NCBI_GenBank
Match: EWM28113.1 (hypothetical protein Naga_100036g21 [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 4.900e-56
Identity = 152/289 (52.60%), Postives = 186/289 (64.36%), Query Frame = 0 
Query:    7 LLVLALAVLCCITTAFVVPVPSLTHSNAVLFSCTSL--------RRTSGVLSMAKGRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDKETQSFGILGSDGSS---SDKVGVGFGATKPSSSVGSGKLSAMDVDAAFEKTMSKIKGQDRMSASPL-GGVVVPGGPGQAPVRADGKVPVRNIGIFDVVPQSVQSGFELTLFALLTLNLLVIIVIGTGFAVEALPTSNLDLPDFLVKLSKLVQPFIQKTDALFTPALGVFFLLSSLLGSFKIAQLSQGTTTYVEKKEI 284
            LL L LA LC  + AF+ P      S  +    TSL        RR+  V+SM KGRK                               +DKE +SFGILGSDG     + +VGVGFG  K SS    GKLS +DVD A+E+ +SK+KGQDR+S+SPL GG  V  G G+    ADGKVPVRNIG+ DV+P+SVQS  EL L  LL LNL+VII IGTGFAV+ALPTSNL+LP+ LV LSK V+P I+K++  FTP+LGVFFLLS+LLGSFKI+QLS+G TTYVEKK++
Sbjct:    5 LLPLVLAFLCHYSFAFIKPFAPKIRSQRL----TSLQPDGNAHFRRSRVVVSMGKGRK-----AEKKRKSAPPARREVASPKAAPGSQTQDKEPESFGILGSDGGMGPINSQVGVGFGTPKASS---PGKLSPVDVDDAYERALSKVKGQDRLSSSPLRGGGGVSKGLGEP--SADGKVPVRNIGLLDVIPESVQSSLELVLIGLLALNLVVIIGIGTGFAVQALPTSNLELPESLVALSKKVEPLIEKSEFYFTPSLGVFFLLSTLLGSFKISQLSRGGTTYVEKKDL 279
The following BLAST results are available for this feature:
BLAST of NO05G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28113.14.900e-5652.60hypothetical protein Naga_100036g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003582NSK003582Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02470.1NO05G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584358gene_3048Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g21gene2450Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02470.1NO05G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02470 ID=NO05G02470|Name=NO05G02470|organism=Nannochloropsis oceanica|type=gene|length=882bp
ATGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTG
CATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACG
CTGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGC
ATGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCC
GTTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCA
CCACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCG
GATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCC
CTCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCG
CATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCC
TCGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGT
GAGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGG
TGCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTA
ACATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGA
AGCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGT
CGAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCT
GCCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGAT
CGCTCAGTTGTCTCAGGGTACAACAACATATGTAGAAAAGAAGGAGATTG
ACAAACAAATGAAGGGACGCAGAAAGAGATAA
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protein sequence of NO05G02470.1

>NO05G02470.1-protein ID=NO05G02470.1-protein|Name=NO05G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSHLLPLLVLALAVLCCITTAFVVPVPSLTHSNAVLFSCTSLRRTSGVLS
MAKGRKAAKKRKTVPPPFPRDDEQDSSSSTISTTTKAKDKETQSFGILGS
DGSSSDKVGVGFGATKPSSSVGSGKLSAMDVDAAFEKTMSKIKGQDRMSA
SPLGGVVVPGGPGQAPVRADGKVPVRNIGIFDVVPQSVQSGFELTLFALL
TLNLLVIIVIGTGFAVEALPTSNLDLPDFLVKLSKLVQPFIQKTDALFTP
ALGVFFLLSSLLGSFKIAQLSQGTTTYVEKKEIDKQMKGRRKR*
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Synonyms
Publications