NO05G02470.1, NO05G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02470.1
Unique NameNO05G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr5:655189..656070 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:655189..656070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G02470.1 vs.
Match: EWM28113.1 (hypothetical protein Naga_100036g21 [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 1.300e-61
Identity = 160/289 (55.36%), Postives = 201/289 (69.55%), Query Frame = 0 
Query:    7 LLVLALAVLCCITTAFVVPVPSLTHSNAVLFSCTSL--------RRTSGVLSMAKGRKAAKKRKTVPPPFPRDDEQDSSSSTISTTTKAKDKETQSFGILGSDGSS---SDKVGVGFGATKPSSSVGSGKLSAMDVDAAFEKTMSKIKGQDRMSASPL-GGVVVPGGPGQAPVRADGKVPVRNIGIFDVVPQSVQSGFELTLFALLTLNLLVIIVIGTGFAVEALPTSNLDLPDFLVKLSKLVQPFIQKTDALFTPALGVFFLLSSLLGSFKIAQLSQGTTTYVEKKEI 284
            LL L LA LC  + AF+ P      S  +    TSL        RR+  V+SM KGRKA KKRK+ PP       ++ +S   +  ++ +DKE +SFGILGSDG     + +VGVGFG  K SS    GKLS +DVD A+E+ +SK+KGQDR+S+SPL GG  V  G G+    ADGKVPVRNIG+ DV+P+SVQS  EL L  LL LNL+VII IGTGFAV+ALPTSNL+LP+ LV LSK V+P I+K++  FTP+LGVFFLLS+LLGSFKI+QLS+G TTYVEKK++
Sbjct:    5 LLPLVLAFLCHYSFAFIKPFAPKIRSQRL----TSLQPDGNAHFRRSRVVVSMGKGRKAEKKRKSAPPA-----RREVASPKAAPGSQTQDKEPESFGILGSDGGMGPINSQVGVGFGTPKASSP---GKLSPVDVDDAYERALSKVKGQDRLSSSPLRGGGGVSKGLGEP--SADGKVPVRNIGLLDVIPESVQSSLELVLIGLLALNLVVIIGIGTGFAVQALPTSNLELPESLVALSKKVEPLIEKSEFYFTPSLGVFFLLSTLLGSFKISQLSRGGTTYVEKKDL 279
The following BLAST results are available for this feature:
BLAST of NO05G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28113.11.300e-6155.36hypothetical protein Naga_100036g21 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02470NO05G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02470.1NO05G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02470.1.cds1NO05G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02470.1 ID=NO05G02470.1|Name=NO05G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTG
CATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACG
CTGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGC
ATGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCC
GTTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCA
CCACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCG
GATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCC
CTCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCG
CATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCC
TCGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGT
GAGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGG
TGCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTA
ACATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGA
AGCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGT
CGAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCT
GCCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGAT
CGCTCAGTTGTCTCAGGGTACAACAACATATGTAGAAAAGAAGGAGATTG
ACAAACAAATGAAGGGACGCAGAAAGAGATAA
back to top

protein sequence of NO05G02470.1

>NO05G02470.1-protein ID=NO05G02470.1-protein|Name=NO05G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSHLLPLLVLALAVLCCITTAFVVPVPSLTHSNAVLFSCTSLRRTSGVLS
MAKGRKAAKKRKTVPPPFPRDDEQDSSSSTISTTTKAKDKETQSFGILGS
DGSSSDKVGVGFGATKPSSSVGSGKLSAMDVDAAFEKTMSKIKGQDRMSA
SPLGGVVVPGGPGQAPVRADGKVPVRNIGIFDVVPQSVQSGFELTLFALL
TLNLLVIIVIGTGFAVEALPTSNLDLPDFLVKLSKLVQPFIQKTDALFTP
ALGVFFLLSSLLGSFKIAQLSQGTTTYVEKKEIDKQMKGRRKR*
back to top

mRNA from alignment at chr5:655189..656070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02470.1 ID=NO05G02470.1|Name=NO05G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at chr5:655189..656070+ (Nannochloropsis oceanica)
ATGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTG
CATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACG
CTGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGC
ATGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCC
GTTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCA
CCACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCG
GATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCC
CTCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCG
CATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCC
TCGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGT
GAGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGG
TGCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTA
ACATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGA
AGCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGT
CGAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCT
GCCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGAT
CGCTCAGTTGTCTCAGGGTACAACAACATATGTAGAAAAGAAGGAGATTG
ACAAACAAATGAAGGGACGCAGAAAGAGATAA
back to top

Coding sequence (CDS) from alignment at chr5:655189..656070+

>NO05G02470.1 ID=NO05G02470.1|Name=NO05G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr5:655189..656070+ (Nannochloropsis oceanica)
ATGAGTCACCTCCTACCCCTTCTCGTCCTGGCCCTGGCAGTTTTGTGCTG
CATCACCACCGCTTTTGTCGTGCCCGTGCCATCATTAACACATTCTAACG
CTGTGCTATTTAGCTGCACATCGTTGCGGAGGACCTCGGGTGTCCTCAGC
ATGGCCAAAGGACGCAAAGCGGCGAAGAAGCGTAAGACAGTCCCTCCCCC
GTTTCCCCGCGATGACGAGCAGGACTCTAGCAGCAGCACCATCTCAACCA
CCACCAAGGCAAAGGATAAAGAGACCCAGTCATTTGGCATCTTAGGCTCG
GATGGTAGCAGCAGTGACAAGGTAGGCGTGGGATTTGGTGCCACCAAGCC
CTCGTCGTCTGTGGGTTCCGGAAAACTCTCTGCCATGGACGTTGACGCCG
CATTTGAGAAGACTATGAGCAAGATCAAGGGTCAAGACCGCATGTCCGCC
TCGCCTTTAGGTGGTGTGGTCGTGCCAGGTGGGCCCGGACAAGCGCCAGT
GAGGGCAGATGGCAAGGTGCCCGTGCGAAACATTGGCATCTTTGATGTGG
TGCCCCAGTCGGTACAGAGTGGCTTCGAGCTCACTCTCTTTGCCTTGTTA
ACATTGAATTTGTTAGTTATCATTGTGATTGGCACGGGGTTCGCAGTTGA
AGCGTTGCCCACATCGAATTTGGACTTGCCAGACTTTTTGGTGAAATTGT
CGAAGCTGGTTCAGCCTTTTATCCAGAAGACTGATGCCCTCTTCACTCCT
GCCTTGGGTGTTTTTTTCCTTTTGTCGTCTTTGTTGGGATCTTTTAAGAT
CGCTCAGTTGTCTCAGGGTACAACAACATATGTAGAAAAGAAGGAGATTG
ACAAACAAATGAAGGGACGCAGAAAGAGATAA
back to top
Synonyms
Publications