NO05G02420, NO05G02420 (gene) Nannochloropsis oceanica

Overview
NameNO05G02420
Unique NameNO05G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2177
Alignment locationchr5:644516..646692 -

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Properties
Property NameValue
DescriptionLeucine-rich repeat, ribonuclease inhibitor subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:644516..646692 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO05G02420 vs. NCBI_GenBank
Match: EWM28129.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 275.8 bits (704), Expect = 1.700e-70
Identity = 204/346 (58.96%), Postives = 236/346 (68.21%), Query Frame = 0 
Query:    3 STKKRLTEGILTRAPPYPTAA----PSTSHAFAAAPSIPSLVKGPIPIE-RPVAVTMLALGQDVLNLVAQLLHPMDLARLAMCTRDLLLGSELSAALLCRSFLKPPETG----EETTSGFGAHRSVSSWRFRYLCAFEVAGVGDDRLKMVLRQMY-----------------AGAGAAGGIEGASTATATHFPAPLQHLNLYGLNIGDAGAERLALALRVARAYRVLLXXXXXXXXXXXXXXXXXXXLKRHHHEVDTLFLAQNKIGPNGARCVADLISSSPKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCTSFSSQAREGIRSSWGGRGGDKVFGLYI 323
            +++KR  + +L+  P    A+    PSTSHAFAAA   P+L+K    ++ + V   + ALGQDVLN+VAQ  HP++LARL +CTR+LL+GSE SAALLCR ++ P E      +   S  G+  S +SW +RYLCAFEVAGV   +LK VLR +Y                 A AG+ G   G  T TAT      QHLNLYGL +GD GAERLALALRVARAYRVLL                   +KRHH EVDTLFLAQN+IGP GARCVADLISSSP LRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX C SFSSQAREG+RSSWGGRGGDKVFGLYI
Sbjct:    7 TSRKRELDDVLSLCPTPGMASTFLPPSTSHAFAAAVMAPALIKAVASVKSKHVTTPLSALGQDVLNVVAQYCHPIELARLGLCTRELLVGSEQSAALLCRRYVAPAEADMVAYQAGHSNLGS-CSGNSWCYRYLCAFEVAGVEAPKLKTVLRDIYSQRHVMQVNIGSVTAKRALAGSTGAARGVLTPTAT------QHLNLYGLRMGDGGAERLALALRVARAYRVLLLNLGGNDLSDRGAQAVIQAIKRHHAEVDTLFLAQNQIGPEGARCVADLISSSPTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCASFSSQAREGLRSSWGGRGGDKVFGLYI 345
The following BLAST results are available for this feature:
BLAST of NO05G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28129.11.700e-7058.96Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003577NSK003577Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02420.1NO05G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584339gene_3043Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g15gene2455Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02420.1NO05G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02420 ID=NO05G02420|Name=NO05G02420|organism=Nannochloropsis oceanica|type=gene|length=2177bp
CTAACCAGCTTGAGGCTCATGGTGACTGCCCCCCCCACTTTCTTCGCGTG
CGCACGCGCGTCAAGTTCAAGCGACGTATGTTTCCCCACTCGACATGCCA
TTGTGTGTCGTGCATCGGCATGGAAACTGCGTCTCAATTGTGCTTGTGAC
ATATTAAATTCTCTAGCAGCCACTTCAACCATTGGCCATTGCATCAGTGC
GATCACAGTGGTTCTCCTCCTCCTTTCTCCCCTTCTCCCGCTCTCCCCCT
CGCTCAGCCTGGCATCGGTCCCGAGAAGCGACTGAATCGTCTCGTTAATA
ATTTTCCGTCGCGCCTCACTCAAACAATATACACAAAAACGCTGCACACT
CAACCGTCCAAACAAAATGATAGGCGCGGCAGAATGCCGTCGACCAAGAA
GCGCTTGACGGAGGGGATCTTGACTCGCGCGCCGCCCTACCCCACTGCCG
CTCCTTCAACTTCACATGCGTTCGCCGCCGCGCCCTCGATACCCTCTTTG
GTCAAAGGCCCAATACCGATCGAGCGGCCTGTTGCGGTGACCATGCTAGC
GTTGGGTCAGGATGTATTGAATCTGGTAGCTCAATTGTTGCATCCTATGG
ACCTGGCTCGCCTCGCCATGTGCACACGTGATCTACTCCTCGGGAGCGAG
CTGAGCGCCGCTCTCCTGTGCCGCAGCTTTTTGAAGCCCCCAGAGACCGG
GGAGGAGACGACGAGTGGTTTTGGCGCTCATCGCAGCGTCAGTAGCTGGC
GGTTTCGCTACCTGTGTGCCTTCGAAGTCGCGGGCGTGGGGGATGATCGG
CTCAAGATGGTGCTGCGACAAATGTATGCAGGAGCAGGAGCAGCAGGCGG
CATTGAAGGAGCATCAACGGCAACGGCCACTCACTTTCCTGCACCTTTGC
AGCATCTCAACCTGTACGGTTTGAATATTGGCGACGCTGGCGCAGAACGC
CTCGCGCTGGCCCTGCGGGTGGCGCGGGCTTATCGGGTGTTGCTCCTCAA
CCTGGGGGGCAACAATTTGAGCGACCGAGGGGCTCAAGCGGTGGTGCAGG
CCCTGAAGCGACACCACCATGAGGTGGATACTCTCTTTCTGGCTCAGAAC
AAGATTGGTCCAAATGGTGCGCGGTGCGTGGCTGATTTAATCTCCTCAAG
TCCCAAGCTTCGTTCGCTTTCCTTGTCCGATAACCCGTTGATGGACGAGG
GTGCTGTGTGCATCACAGGGGCCTTGCCGGAAAGTAGAAGCTTGGCAACC
TTGTCGATGCGATGTACAAGTTTTTCGTCTCAGGCCCGGGAGGGGATCCG
GTCGTCGTGGGGAGGACGGGGTGGAGACAAGGTTTTTGGGCTTTACATTT
AAAAAATAAGAGGAGGCGGAGTGATGAGACCATTGGGGGAAGGAGAAAAT
AACTTGGGGTTAAAGGAGAAGGAATTGAACATGGCGTGAAGAGATGGTAT
TGTCAATGGAGGAATATAAAGTATTAAGGTGGGGCGAGTTGACAGGAGAA
TGACGAACACAACATGCAAACTTTACTTGTTGTGGAGCGAAAGCACCGAT
GTGTACAAACTTGAGTGGAGGAAGAGATTAGAAATTTTGTGGAGGGAGAA
AATGAAAGAGGAAGAGAGAGACGAAGGCAGGCGGATGCGTAACCTAAGGA
CGAGCATATCCTTGGCATCTGTTGATGCTGCACGTATGCAATAGAGGACG
ACATTGATTTATGTATCTTTGGTTTATTTTTGGTGAAACCACACTCGGTA
GATCGCCCTTTTTCAAAAGTCTTAGTAAATGTTCACAATATCCATTGAAC
AATCAGCCGAAGTGTTAAGACAACTCAGCCTCAACACGAAGCAAGAGCCA
CTGATGCTTGCTGGTAGTAGGAGAACTGCAAATATATATATTTACATGAA
AAGAGGAATAGCGCCAAACAAAGAGAGAATGAATATCATAAGCGCACACA
CCAAAGAGGATACTAGCGGCCCTGAAGTTAGAGCGGAGAAAGATGAAGGA
CGGACGTGGGGGGGCTCATGCATGCTCCAACCATATCCAACGTACAAAGA
ATGAGCAGACGTGAAAGACGATGAAAGAAGAGATGTCAGAGACAAAGCAA
ATAAGTATCAAACTGACTATCTGAGTAAAATGCGGATGACAGAGATTTTG
AACAGAAAAGAAAAAGAATTAGAGAAA
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protein sequence of NO05G02420.1

>NO05G02420.1-protein ID=NO05G02420.1-protein|Name=NO05G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MPSTKKRLTEGILTRAPPYPTAAPSTSHAFAAAPSIPSLVKGPIPIERPV
AVTMLALGQDVLNLVAQLLHPMDLARLAMCTRDLLLGSELSAALLCRSFL
KPPETGEETTSGFGAHRSVSSWRFRYLCAFEVAGVGDDRLKMVLRQMYAG
AGAAGGIEGASTATATHFPAPLQHLNLYGLNIGDAGAERLALALRVARAY
RVLLLNLGGNNLSDRGAQAVVQALKRHHHEVDTLFLAQNKIGPNGARCVA
DLISSSPKLRSLSLSDNPLMDEGAVCITGALPESRSLATLSMRCTSFSSQ
AREGIRSSWGGRGGDKVFGLYI*
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Synonyms
Publications