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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:644516..646692 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02420.1 vs.
Match: EWM28129.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana]) HSP 1 Score: 384.8 bits (987), Expect = 2.600e-103 Identity = 220/346 (63.58%), Postives = 254/346 (73.41%), Query Frame = 0
Query: 3 STKKRLTEGILTRAPPYPTAA----PSTSHAFAAAPSIPSLVKGPIPIE-RPVAVTMLALGQDVLNLVAQLLHPMDLARLAMCTRDLLLGSELSAALLCRSFLKPPETG----EETTSGFGAHRSVSSWRFRYLCAFEVAGVGDDRLKMVLRQMY-----------------AGAGAAGGIEGASTATATHFPAPLQHLNLYGLNIGDAGAERLALALRVARAYRVLLLNLGGNNLSDRGAQAVVQALKRHHHEVDTLFLAQNKIGPNGARCVADLISSSPKLRSLSLSDNPLMDEGAVCITGALPESRSLATLSMRCTSFSSQAREGIRSSWGGRGGDKVFGLYI 323
+++KR + +L+ P A+ PSTSHAFAAA P+L+K ++ + V + ALGQDVLN+VAQ HP++LARL +CTR+LL+GSE SAALLCR ++ P E + S G+ S +SW +RYLCAFEVAGV +LK VLR +Y A AG+ G G T TAT QHLNLYGL +GD GAERLALALRVARAYRVLLLNLGGN+LSDRGAQAV+QA+KRHH EVDTLFLAQN+IGP GARCVADLISSSP LRSLSLSDNPL DEGAVCITGALPES SLATLSMRC SFSSQAREG+RSSWGGRGGDKVFGLYI
Sbjct: 7 TSRKRELDDVLSLCPTPGMASTFLPPSTSHAFAAAVMAPALIKAVASVKSKHVTTPLSALGQDVLNVVAQYCHPIELARLGLCTRELLVGSEQSAALLCRRYVAPAEADMVAYQAGHSNLGSC-SGNSWCYRYLCAFEVAGVEAPKLKTVLRDIYSQRHVMQVNIGSVTAKRALAGSTGAARGVLTPTAT------QHLNLYGLRMGDGGAERLALALRVARAYRVLLLNLGGNDLSDRGAQAVIQAIKRHHAEVDTLFLAQNQIGPEGARCVADLISSSPTLRSLSLSDNPLTDEGAVCITGALPESSSLATLSMRCASFSSQAREGLRSSWGGRGGDKVFGLYI 345
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02420.1 ID=NO05G02420.1|Name=NO05G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp
CTAACCAGCTTGAGGCTCATGGTGACTGCCCCCCCCACTTTCTTCGCGTG
CGCACGCGCGTCAAGTTCAAGCGACGTATGTTTCCCCACTCGACATGCCA
TTGTGTGTCGTGCATCGGCATGGAAACTGCGTCTCAATTGTGCTTGTGAC
ATATTAAATTCTCTAGCAGCCACTTCAACCATTGGCCATTGCATCAGTGC
GATCACAGTGGTTCTCCTCCTCCTTTCTCCCCTTCTCCCGCTCTCCCCCT
CGCTCAGCCTGGCATCGGTCCCGAGAAGCGACTGAATCGTCTCGTTAATA
ATTTTCCGTCGCGCCTCACTCAAACAATATACACAAAAACGCTGCACACT
CAACCGTCCAAACAAAATGATAGGCGCGGCAGAATGCCGTCGACCAAGAA
GCGCTTGACGGAGGGGATCTTGACTCGCGCGCCGCCCTACCCCACTGCCG
CTCCTTCAACTTCACATGCGTTCGCCGCCGCGCCCTCGATACCCTCTTTG
GTCAAAGGCCCAATACCGATCGAGCGGCCTGTTGCGGTGACCATGCTAGC
GTTGGGTCAGGATGTATTGAATCTGGTAGCTCAATTGTTGCATCCTATGG
ACCTGGCTCGCCTCGCCATGTGCACACGTGATCTACTCCTCGGGAGCGAG
CTGAGCGCCGCTCTCCTGTGCCGCAGCTTTTTGAAGCCCCCAGAGACCGG
GGAGGAGACGACGAGTGGTTTTGGCGCTCATCGCAGCGTCAGTAGCTGGC
GGTTTCGCTACCTGTGTGCCTTCGAAGTCGCGGGCGTGGGGGATGATCGG
CTCAAGATGGTGCTGCGACAAATGTATGCAGGAGCAGGAGCAGCAGGCGG
CATTGAAGGAGCATCAACGGCAACGGCCACTCACTTTCCTGCACCTTTGC
AGCATCTCAACCTGTACGGTTTGAATATTGGCGACGCTGGCGCAGAACGC
CTCGCGCTGGCCCTGCGGGTGGCGCGGGCTTATCGGGTGTTGCTCCTCAA
CCTGGGGGGCAACAATTTGAGCGACCGAGGGGCTCAAGCGGTGGTGCAGG
CCCTGAAGCGACACCACCATGAGGTGGATACTCTCTTTCTGGCTCAGAAC
AAGATTGGTCCAAATGGTGCGCGGTGCGTGGCTGATTTAATCTCCTCAAG
TCCCAAGCTTCGTTCGCTTTCCTTGTCCGATAACCCGTTGATGGACGAGG
GTGCTGTGTGCATCACAGGGGCCTTGCCGGAAAGTAGAAGCTTGGCAACC
TTGTCGATGCGATGTACAAGTTTTTCGTCTCAGGCCCGGGAGGGGATCCG
GTCGTCGTGGGGAGGACGGGGTGGAGACAAGGTTTTTGGGCTTTACATTT
AAAAAATAAGAGGAGGCGGAGTGATGAGACCATTGGGGGAAGGAGAAAAT
AACTTGGGGTTAAAGGAGAAGGAATTGAACATGGCGTGAAGAGATGGTAT
TGTCAATGGAGGAATATAAAGTATTAAGGTGGGGCGAGTTGACAGGAGAA
TGACGAACACAACATGCAAACTTTACTTGTTGTGGAGCGAAAGCACCGAT
GTGTACAAACTTGAGTGGAGGAAGAGATTAGAAATTTTGTGGAGGGAGAA
AATGAAAGAGGAAGAGAGAGACGAAGGCAGGCGGATGCGTAACCTAAGGA
CGAGCATATCCTTGGCATCTGTTGATGCTGCACGTATGCAATAGAGGACG
ACATTGATTTATGTATCTTTGGTTTATTTTTGGTGAAACCACACTCGGTA
GATCGCCCTTTTTCAAAAGTCTTAGTAAATGTTCACAATATCCATTGAAC
AATCAGCCGAAGTGTTAAGACAACTCAGCCTCAACACGAAGCAAGAGCCA
CTGATGCTTGCTGGTAGTAGGAGAACTGCAAATATATATATTTACATGAA
AAGAGGAATAGCGCCAAACAAAGAGAGAATGAATATCATAAGCGCACACA
CCAAAGAGGATACTAGCGGCCCTGAAGTTAGAGCGGAGAAAGATGAAGGA
CGGACGTGGGGGGGCTCATGCATGCTCCAACCATATCCAACGTACAAAGA
ATGAGCAGACGTGAAAGACGATGAAAGAAGAGATGTCAGAGACAAAGCAA
ATAAGTATCAAACTGACTATCTGAGTAAAATGCGGATGACAGAGATTTTG
AACAGAAAAGAAAAAGAATTAGAGAAA back to topprotein sequence of NO05G02420.1 >NO05G02420.1-protein ID=NO05G02420.1-protein|Name=NO05G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MPSTKKRLTEGILTRAPPYPTAAPSTSHAFAAAPSIPSLVKGPIPIERPV
AVTMLALGQDVLNLVAQLLHPMDLARLAMCTRDLLLGSELSAALLCRSFL
KPPETGEETTSGFGAHRSVSSWRFRYLCAFEVAGVGDDRLKMVLRQMYAG
AGAAGGIEGASTATATHFPAPLQHLNLYGLNIGDAGAERLALALRVARAY
RVLLLNLGGNNLSDRGAQAVVQALKRHHHEVDTLFLAQNKIGPNGARCVA
DLISSSPKLRSLSLSDNPLMDEGAVCITGALPESRSLATLSMRCTSFSSQ
AREGIRSSWGGRGGDKVFGLYI* back to topmRNA from alignment at chr5:644516..646692- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02420.1 ID=NO05G02420.1|Name=NO05G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp|location=Sequence derived from alignment at chr5:644516..646692- (Nannochloropsis oceanica)
CTAACCAGCTTGAGGCTCATGGTGACTGCCCCCCCCACTTTCTTCGCGTG
CGCACGCGCGTCAAGTTCAAGCGACGTATGTTTCCCCACTCGACATGCCA
TTGTGTGTCGTGCATCGGCATGGAAACTGCGTCTCAATTGTGCTTGTGAC
ATATTAAATTCTCTAGCAGCCACTTCAACCATTGGCCATTGCATCAGTGC
GATCACAGTGGTTCTCCTCCTCCTTTCTCCCCTTCTCCCGCTCTCCCCCT
CGCTCAGCCTGGCATCGGTCCCGAGAAGCGACTGAATCGTCTCGTTAATA
ATTTTCCGTCGCGCCTCACTCAAACAATATACACAAAAACGCTGCACACT
CAACCGTCCAAACAAAATGATAGGCGCGGCAGAATGCCGTCGACCAAGAA
GCGCTTGACGGAGGGGATCTTGACTCGCGCGCCGCCCTACCCCACTGCCG
CTCCTTCAACTTCACATGCGTTCGCCGCCGCGCCCTCGATACCCTCTTTG
GTCAAAGGCCCAATACCGATCGAGCGGCCTGTTGCGGTGACCATGCTAGC
GTTGGGTCAGGATGTATTGAATCTGGTAGCTCAATTGTTGCATCCTATGG
ACCTGGCTCGCCTCGCCATGTGCACACGTGATCTACTCCTCGGGAGCGAG
CTGAGCGCCGCTCTCCTGTGCCGCAGCTTTTTGAAGCCCCCAGAGACCGG
GGAGGAGACGACGAGTGGTTTTGGCGCTCATCGCAGCGTCAGTAGCTGGC
GGTTTCGCTACCTGTGTGCCTTCGAAGTCGCGGGCGTGGGGGATGATCGG
CTCAAGATGGTGCTGCGACAAATGTATGCAGGAGCAGGAGCAGCAGGCGG
CATTGAAGGAGCATCAACGGCAACGGCCACTCACTTTCCTGCACCTTTGC
AGCATCTCAACCTGTACGGTTTGAATATTGGCGACGCTGGCGCAGAACGC
CTCGCGCTGGCCCTGCGGGTGGCGCGGGCTTATCGGGTGTTGCTCCTCAA
CCTGGGGGGCAACAATTTGAGCGACCGAGGGGCTCAAGCGGTGGTGCAGG
CCCTGAAGCGACACCACCATGAGGTGGATACTCTCTTTCTGGCTCAGAAC
AAGATTGGTCCAAATGGTGCGCGGTGCGTGGCTGATTTAATCTCCTCAAG
TCCCAAGCTTCGTTCGCTTTCCTTGTCCGATAACCCGTTGATGGACGAGG
GTGCTGTGTGCATCACAGGGGCCTTGCCGGAAAGTAGAAGCTTGGCAACC
TTGTCGATGCGATGTACAAGTTTTTCGTCTCAGGCCCGGGAGGGGATCCG
GTCGTCGTGGGGAGGACGGGGTGGAGACAAGGTTTTTGGGCTTTACATTT
AAAAAATAAGAGGAGGCGGAGTGATGAGACCATTGGGGGAAGGAGAAAAT
AACTTGGGGTTAAAGGAGAAGGAATTGAACATGGCGTGAAGAGATGGTAT
TGTCAATGGAGGAATATAAAGTATTAAGGTGGGGCGAGTTGACAGGAGAA
TGACGAACACAACATGCAAACTTTACTTGTTGTGGAGCGAAAGCACCGAT
GTGTACAAACTTGAGTGGAGGAAGAGATTAGAAATTTTGTGGAGGGAGAA
AATGAAAGAGGAAGAGAGAGACGAAGGCAGGCGGATGCGTAACCTAAGGA
CGAGCATATCCTTGGCATCTGTTGATGCTGCACGTATGCAATAGAGGACG
ACATTGATTTATGTATCTTTGGTTTATTTTTGGTGAAACCACACTCGGTA
GATCGCCCTTTTTCAAAAGTCTTAGTAAATGTTCACAATATCCATTGAAC
AATCAGCCGAAGTGTTAAGACAACTCAGCCTCAACACGAAGCAAGAGCCA
CTGATGCTTGCTGGTAGTAGGAGAACTGCAAATATATATATTTACATGAA
AAGAGGAATAGCGCCAAACAAAGAGAGAATGAATATCATAAGCGCACACA
CCAAAGAGGATACTAGCGGCCCTGAAGTTAGAGCGGAGAAAGATGAAGGA
CGGACGTGGGGGGGCTCATGCATGCTCCAACCATATCCAACGTACAAAGA
ATGAGCAGACGTGAAAGACGATGAAAGAAGAGATGTCAGAGACAAAGCAA
ATAAGTATCAAACTGACTATCTGAGTAAAATGCGGATGACAGAGATTTTG
AACAGAAAAGAAAAAGAATTAGAGAAA back to topCoding sequence (CDS) from alignment at chr5:644516..646692- >NO05G02420.1 ID=NO05G02420.1|Name=NO05G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr5:644516..646692- (Nannochloropsis oceanica)
ATGCCGTCGACCAAGAAGCGCTTGACGGAGGGGATCTTGACTCGCGCGCC
GCCCTACCCCACTGCCGCTCCTTCAACTTCACATGCGTTCGCCGCCGCGC
CCTCGATACCCTCTTTGGTCAAAGGCCCAATACCGATCGAGCGGCCTGTT
GCGGTGACCATGCTAGCGTTGGGTCAGGATGTATTGAATCTGGTAGCTCA
ATTGTTGCATCCTATGGACCTGGCTCGCCTCGCCATGTGCACACGTGATC
TACTCCTCGGGAGCGAGCTGAGCGCCGCTCTCCTGTGCCGCAGCTTTTTG
AAGCCCCCAGAGACCGGGGAGGAGACGACGAGTGGTTTTGGCGCTCATCG
CAGCGTCAGTAGCTGGCGGTTTCGCTACCTGTGTGCCTTCGAAGTCGCGG
GCGTGGGGGATGATCGGCTCAAGATGGTGCTGCGACAAATGTATGCAGGA
GCAGGAGCAGCAGGCGGCATTGAAGGAGCATCAACGGCAACGGCCACTCA
CTTTCCTGCACCTTTGCAGCATCTCAACCTGTACGGTTTGAATATTGGCG
ACGCTGGCGCAGAACGCCTCGCGCTGGCCCTGCGGGTGGCGCGGGCTTAT
CGGGTGTTGCTCCTCAACCTGGGGGGCAACAATTTGAGCGACCGAGGGGC
TCAAGCGGTGGTGCAGGCCCTGAAGCGACACCACCATGAGGTGGATACTC
TCTTTCTGGCTCAGAACAAGATTGGTCCAAATGGTGCGCGGTGCGTGGCT
GATTTAATCTCCTCAAGTCCCAAGCTTCGTTCGCTTTCCTTGTCCGATAA
CCCGTTGATGGACGAGGGTGCTGTGTGCATCACAGGGGCCTTGCCGGAAA
GTAGAAGCTTGGCAACCTTGTCGATGCGATGTACAAGTTTTTCGTCTCAG
GCCCGGGAGGGGATCCGGTCGTCGTGGGGAGGACGGGGTGGAGACAAGGT
TTTTGGGCTTTACATTTAA back to top
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