NO05G02400, NO05G02400 (gene) Nannochloropsis oceanica

Overview
NameNO05G02400
Unique NameNO05G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2141
Alignment locationchr5:639921..642061 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna polymerase i
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:639921..642061 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00171085'-flap endonuclease activity
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0004518nuclease activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0033567DNA replication, Okazaki fragment processing
GO:0009058biosynthetic process
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0362795-3_exonuclease_C_sf
IPR029060PIN_domain-like
IPR038969FEN_bact-like
IPR0200465-3_exonucl_a-hlix_arch_N
IPR0200455-3_exonuclease_C
IPR008918HhH2
IPR0024215-3_exonuclease_N
Homology
BLAST of NO05G02400 vs. NCBI_GenBank
Match: EWM28117.1 (dna polymerase i [Nannochloropsis gaditana])

HSP 1 Score: 465.3 bits (1196), Expect = 2.100e-127
Identity = 236/334 (70.66%), Postives = 275/334 (82.34%), Query Frame = 0
Query:  115 RIPPPIAIQPAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVS-FRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPMLSSPSSSSWVSLEHLRYLGVDEVEGEALMEEAMGAKGVGKGPFLKLLKEQQRPSVPF 448
            ++ P     P P+   FFILDATS LYRSY+SKYQLNDY+ + D+PLLLLGKEFAQ++++HNPAYVAA FDG RD VFRR LFP YK+NR+AQP ELLALVPRAM YL ALGC   FRS  HEGDDLMG+LSH+A  ++P+VT +LVTEDKDM CLV D  +T VMHPRTL++FD A VE+K+GVPPSLV DLL LAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANL+ VAA+PNLRGAKTLA KL +QKEDV +YRSVVALACDV L+LP    P  +    LE LRY GVDE+EGE+L+ EAMGA G+G+GPFL+LL+ Q++ SVPF
Sbjct:   93 QMSPRTPNMPVPTENCFFILDATSFLYRSYYSKYQLNDYE-ETDRPLLLLGKEFAQIMTQHNPAYVAAAFDGPRDQVFRRDLFPAYKRNREAQPPELLALVPRAMAYLEALGCRGVFRSTRHEGDDLMGSLSHMAKAVAPDVTVVLVTEDKDMFCLVDD--RTLVMHPRTLEVFDAARVEAKLGVPPSLVGDLLSLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLEDVAALPNLRGAKTLAAKLTQQKEDVRVYRSVVALACDVALQLPRAPDPRWTGTSPLEGLRYGGVDEIEGESLLLEAMGAPGIGRGPFLQLLRHQRQRSVPF 423          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: OLB11444.1 (hypothetical protein AUH10_09915 [Gammaproteobacteria bacterium 13_2_20CM_66_19])

HSP 1 Score: 163.7 bits (413), Expect = 1.300e-36
Identity = 96/256 (37.50%), Postives = 140/256 (54.69%), Query Frame = 0
Query:  132 FILDATSLLYRSYFSKY-QLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKL 387
            F++DA+  ++R+Y S    + D DG     +    +    L+ R  PAY+A  FD RR   +R  ++P YK NR+  PA+L+  +       R LG  +F  P +E DD++GTL+HL       V +  +T DKD+  LV D G  F       Q F    +E   GV P   AD L L GD VD IPGV G+G +TA  L++AF SLD +YA+L  VA +  LRGA +L  +L   ++ V++ R +  +ACD++L
Sbjct:   14 FLIDASVYVFRAYHSMLPDMRDRDGNPAHAVFGFARFLGDLIERVRPAYMAVAFDERRAGSYRNRIYPPYKANRERAPADLVLQLGHCRELCRCLGLAAFVDPEYEADDIIGTLAHL--MRGQGVRSAFITRDKDLAQLVRD-GDLFWDFGARGQ-FGYHDIERHFGVRPERFADYLALTGDEVDNIPGVPGIGHRTAASLMKAFDSLDEMYADLSRVARL-KLRGAGSLGVRLSAHRDSVFLARQLTRIACDLRL 264          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_011771427.1 (DNA polymerase I [Psychromonas ingrahamii] >ABM04873.1 fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37])

HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34
Identity = 89/256 (34.77%), Postives = 142/256 (55.47%), Query Frame = 0
Query:  131 FFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKL 387
            F ++D +S LYR++FS   L +  G+    +  +      L+ + NP++V   FD  +   FR  ++  YK NR + P +L   +      ++A+G      P  E DD++GTLS  A   +  +TT++ T DKDM  LV     T +++  T  + D   V  K G+PP L+ D L L GD VD IPGV GVG +TA+ +L+  GS+D++Y NLD +AA+   RG+KT+A+K++  +E   +   +  +  DV+L
Sbjct:    9 FILVDGSSYLYRAFFSPPHLTNSAGEATGAVYGVVNMLQSLLKQFNPSHVVVVFDA-KGKTFRDDMYTEYKSNRPSMPDDLRIQIEPLHAVIKAMGLPILTIPGVEADDVIGTLSRQAS--AQGITTLISTGDKDMAQLVDT--NTLLINTMTNTVLDVEGVNEKFGIPPELIIDYLGLMGDKVDNIPGVPGVGEKTALAMLQGLGSMDDIYLNLDKLAAL-GFRGSKTIAKKMQDNEEMARLSYQLATIKTDVEL 258          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: PKN12537.1 (ribonuclease HI [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-4])

HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34
Identity = 95/264 (35.98%), Postives = 141/264 (53.41%), Query Frame = 0
Query:  127 SSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPM 391
            SS   ++LD +S +YR+YF   +L    G     +L   K    L+  H P Y+A   DG R++ FRRAL+P YK  RDA PA+L+  +P     L AL   +  +P  E DD++ TL+        +VT  +VT DKD++ +VSD  +  ++     +      V  + GVPP LVAD+L LAGD  D IPGV G+G +TA+ L++ FGSL+        V    +L G+K   E L   +E   + + +  +  DV LE+P+
Sbjct:    3 SSPQLYLLDGSSYIYRAYFGIRELATSGGMPTNAILGFTKLLLDLLQEHRPDYLAVVLDGPREETFRRALYPAYKAQRDAVPADLIPQLPYIRQILAALNIPTLEAPGFEADDVIATLARTYAADGIDVT--IVTGDKDLLQIVSD--RISLLDTMKGKRSGLPEVRDRFGVPPELVADVLGLAGDTSDNIPGVPGIGEKTAIGLVQRFGSLEE-------VLKWKSLVGSKKRREALSAYEEQARLSKLLATVRYDVPLEIPL 255          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_075607714.1 (MULTISPECIES: DNA polymerase I [Alteromonadales] >PDM57427.1 DNA polymerase I [Alteromonas pelagimontana])

HSP 1 Score: 154.8 bits (390), Expect = 6.100e-34
Identity = 101/312 (32.37%), Postives = 162/312 (51.92%), Query Frame = 0
Query:  131 FFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLE-LPMLSSPSSSSWVSLEHL-------RYLG--VDEVEGEALMEEAMGAKGVGKGP 433
            F ++D +S L+R++     L +  G+    +  +      L+ +++P+++A  FD  +   FR  ++  YK NR   P EL + +      +RA+G         E DD++GTL+H A   +  + T++ T DKDM  LV+      +++  T Q+ D   V+ K G+PP LV D L L GD VD IPGV GVG ++A  LL   G +D +Y NLD +A +   RG+KTLA K+++ +E   I  ++  ++ DVKLE  P   +P+     +L+HL       R+      EV  +A  +E+ GA      P
Sbjct:    9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVINMLRSLIKQYHPSHIAVVFDA-KGKTFRDEIYKEYKANRPQMPDELRSQIEPLHNIIRAMGLPIIIEDGVEADDVIGTLAHAA--TAKGIDTLISTGDKDMAQLVNKH--VMLINTMTNQLLDVEGVKEKFGIPPELVVDFLALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDAIYKNLDKIADL-GFRGSKTLAVKMQEYEEQARISYTLATISLDVKLEYTPETLTPTQPDNDALKHLFAEYEFKRWHSEIASEVAADASAKESSGAVAPDTAP 314          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_018982138.1 (DNA polymerase I [Salinimonas chungwhensis])

HSP 1 Score: 153.7 bits (387), Expect = 1.400e-33
Identity = 98/300 (32.67%), Postives = 157/300 (52.33%), Query Frame = 0
Query:  131 FFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLE-LPMLSSPSSSSWVSLEHL-------RYLGVDEVEGEALMEEA 423
            F ++D +S L+R++     L +  G+    +  +      L+ ++NP+ +A  FD  +   FR  ++  YK NR   P EL A +      +RA+G         E DD++GTL+ +A      + T++ T DKDM  LV+      +++  T Q+ D   V+ K GVPP LV D L L GD VD IPGV GVG ++A  LL   G +D +Y NLD +A + N RG+K++A K++  +E   +   +  + CDV+++  P   +P+     +LE L       R+L  +EV  +A  +EA
Sbjct:    9 FILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVINMLRSLIKQYNPSNIAVVFDA-KGKTFRDEIYKDYKANRPPMPQELGAQIKPLHDIIRAMGLPIIVEEGVEADDVIGTLARIA--TEKRIDTVISTGDKDMAQLVNQH--ITLINTMTNQVMDIEGVKEKFGVPPELVIDFLALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDEIYQNLDKIAEL-NFRGSKSMAAKMQDYEEQARLSYELATIKCDVEMDYCPETLTPTEQDNTALETLFTEYEFKRWL--NEVSSQAAADEA 300          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_101039856.1 (DNA polymerase I [Psychromonas sp. MB-3u-54] >PKH01967.1 DNA polymerase I [Psychromonas sp. MB-3u-54])

HSP 1 Score: 151.8 bits (382), Expect = 5.200e-33
Identity = 87/256 (33.98%), Postives = 141/256 (55.08%), Query Frame = 0
Query:  131 FFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKL 387
            F ++D +S LYR++FS   L +  G+    +  +      L+ + NP++V   FD  +   FR  ++  YK NR + P +L   +      ++A+G      P  E DD++GTLS  A   +  +TT++ T DKDM  LV     T +++  T  + D   V  K G+PP L+ D L L GD VD IPGV GVG +TA+ +L+  GS+D++Y NL+ +AA+   RG+KT+A+K++  +    +   +  +  DV+L
Sbjct:    9 FILVDGSSYLYRAFFSPPHLTNSAGEATGAVYGVVNMLQSLLKQFNPSHVVVVFDA-KGKTFRDDMYTEYKSNRPSMPDDLRIQIEPLHEVIKAMGLPILTIPGVEADDVIGTLSRQAS--ARGITTLISTGDKDMAQLV--DANTLLINTMTNTVLDVQGVNEKFGIPPELIIDYLGLMGDKVDNIPGVPGVGEKTALAMLQGLGSMDDIYLNLEKLAAL-GFRGSKTMAKKMQDNEAMARLSYQLATIKTDVEL 258          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_018651072.1 (DNA polymerase I [Actinobacillus capsulatus])

HSP 1 Score: 151.4 bits (381), Expect = 6.800e-33
Identity = 94/256 (36.72%), Postives = 141/256 (55.08%), Query Frame = 0
Query:  133 ILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL 389
            ++D +S LYR++ +   L + +G+    +  +      L+++  P+++A  FD  +   FR  LF  YK +R   P +L A V    T ++ALG         E DD++GTL+  A     NV  ++ T DKDM  LV+D     +++     + D   V  K G+PP L+ D L L GD  D IPGVKGVG +TA+ LL+  GSL  +YANLD VA + + RGAKTLA KL  +KE  ++   +  +  DV+LE+
Sbjct:   11 LVDGSSYLYRAFHAFPPLTNKNGEPTGAMYGVLNMLKSLITQVEPSHIAVVFDA-KGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTLAVQAANDGKNV--LISTGDKDMAQLVNDH--IMLINTMNNTLLDREGVIEKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATL-SFRGAKTLAPKLEAEKEAAYLSYLLATIKTDVELEV 260          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_013752484.1 (DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5] >AEE20984.1 DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5])

HSP 1 Score: 151.0 bits (380), Expect = 8.900e-33
Identity = 97/306 (31.70%), Postives = 162/306 (52.94%), Query Frame = 0
Query:  121 AIQPAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL-PMLSSPSSSSWVSLEHLRYLGVDEVEGEALMEEAMGA 426
            A  P   +  F ++D +S L+R++     L +  G+    +  +      L+ + NP ++A  FD  +   FR  ++  YK NR + P EL + +      ++A+G         E DD++GTL+  A  L   + T++ T DKDM  LV++     +++    QI D   V  K G+PP LV D L L GD VD IPGV GVG ++AV LL+  GS++ +Y NLD +A + + RGAK +A+K+R+ +E   +  ++  +  DV+++  P   SP+ +++  L  L      E+E +  ++EA  A
Sbjct:    7 ATTPVIPNNPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAVYGVINMLRSLIKQFNPTHMAVVFDA-KGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTLADQASKL--GIPTLISTGDKDMAQLVNEH--VTLINTMNNQIMDPQGVVEKFGIPPELVIDFLALKGDKVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKIATL-DFRGAKKMADKMREYEEQARLSYTLATIKLDVEMDCSPTSLSPTEANYSELRDL----FAELEFKRWLKEATDA 302          
BLAST of NO05G02400 vs. NCBI_GenBank
Match: WP_008305120.1 (DNA polymerase I [Paraglaciecola agarilytica] >GAC06269.1 DNA polymerase I [Paraglaciecola agarilytica NO2])

HSP 1 Score: 151.0 bits (380), Expect = 8.900e-33
Identity = 97/306 (31.70%), Postives = 162/306 (52.94%), Query Frame = 0
Query:  121 AIQPAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLEL-PMLSSPSSSSWVSLEHLRYLGVDEVEGEALMEEAMGA 426
            A  P   +  F ++D +S L+R++     L +  G+    +  +      L+ + NP ++A  FD  +   FR  ++  YK NR + P EL + +      ++A+G         E DD++GTL+  A  L   + T++ T DKDM  LV++     +++    QI D   V  K G+PP LV D L L GD VD IPGV GVG ++AV LL+  GS++ +Y NLD +A + + RGAK +A+K+R+ +E   +  ++  +  DV+++  P   SP+ +++  L  L      E+E +  ++EA  A
Sbjct:    7 ATTPVIPNNPFILVDGSSYLFRAFHGMPPLTNSKGQDTGAVYGVINMLRSLIKQFNPTHMAVVFDA-KGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTLADQASKL--GIPTLISTGDKDMAQLVNEH--VTLINTMNNQIMDPQGVVEKFGIPPELVIDFLALKGDKVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKIATL-DFRGAKKMADKMREYEEQARLSYTLATIKLDVEMDCSPTSLSPTEANYSELRDL----FAELEFKRWLKEATDA 302          
The following BLAST results are available for this feature:
BLAST of NO05G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28117.12.100e-12770.66dna polymerase i [Nannochloropsis gaditana][more]
OLB11444.11.300e-3637.50hypothetical protein AUH10_09915 [Gammaproteobacte... [more]
WP_011771427.13.600e-3434.77DNA polymerase I [Psychromonas ingrahamii] >ABM048... [more]
PKN12537.13.600e-3435.98ribonuclease HI [Deltaproteobacteria bacterium HGW... [more]
WP_075607714.16.100e-3432.37MULTISPECIES: DNA polymerase I [Alteromonadales] >... [more]
WP_018982138.11.400e-3332.67DNA polymerase I [Salinimonas chungwhensis][more]
WP_101039856.15.200e-3333.98DNA polymerase I [Psychromonas sp. MB-3u-54] >PKH0... [more]
WP_018651072.16.800e-3336.72DNA polymerase I [Actinobacillus capsulatus][more]
WP_013752484.18.900e-3331.70DNA polymerase I [Glaciecola sp. 4H-3-7+YE-5] >AEE... [more]
WP_008305120.18.900e-3331.70DNA polymerase I [Paraglaciecola agarilytica] >GAC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL083nonsL083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR121ngnoR121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003575NSK003575Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02400.1NO05G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584331gene_3041Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g13gene2457Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02400.1NO05G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02400 ID=NO05G02400|Name=NO05G02400|organism=Nannochloropsis oceanica|type=gene|length=2141bp
TGGGGGAAGGCTGGGGGGTGCGTGGTGGGGCAGAAACTTCCTTGAAGGAG
GAGGGTTATCATCGCTCCCAGCTGGGCATAATTGAGGCTTGCCAGCCTCG
CGGGGGCGAATGTAGTGGTTTGCGATAAGGGGAGTGGGGGGAGGGTGTGG
GGGTGTTCTGTCTTGAGATGCACGCTCTTCTCGGTTTCTCGATGAAGAGG
GCCATGTCCTTTCGTGTGCGTTGTTCATGACGAGATGCACGAAATGTGAA
TTGATCCAAATGATGTCTTGTTGGCCTACCGATTACGATTTCTTGGAAAT
GAATTAGATAGTTTTTTTGGTTCAAAAAAGAAAAAGAAAAAAAGATGGGG
TAACCCAGCCGGCCTGTATCAAATATCGCCGTAGAACATCACAAACCTTT
CCCTTCACAGGGAATAGGGAGTAATGGTGACGGTTTGTGCAGTCTCAGCC
ACTCACCATAATCTGACGATGCCCCTTTCTGCGTCACCACAAACCGCCCA
GAATCAGATGATGTCACGCAGAGGAGGGGTATGCCGGGTGTGAAGTGCCG
TTGTAAGAAACGTGAGAGTCGTGGGAAGATGAAGCGGAGTCGGTCATATG
CTCGTCGCTCTCAAAAGGTCGGTGGCGTCAATAGCAGCAAATCTAGCGCC
CACTACTATCGCAACAATGTCCTGATTCCCATCTGGAGACCACTAATTCG
CCTATTCATGGCCCTCGCCCTGACATTAGCCGCTTCGAAGCTTTGCCAAA
CCGTATGCGCGGTCACGACTGCTACAAGCACCTTCATCACTCGCCCGTTG
TTATCGAGAGTGGCCTCCCTCACTTCCTCTGTTCTGTCCTCTTCCAGCTC
CTCATCCTCTCCCTGGTCCTCGCGCATCCCTCCACCAATAGCCATCCAGC
CCGCGCCCTCATCAGAATTCTTTTTCATCCTGGACGCCACAAGCCTTCTT
TACCGTTCATACTTCTCCAAGTATCAGCTCAACGACTACGATGGGAAAAT
CGACAAACCACTGCTATTACTGGgtaggctggaagaaagggatagagggt
gagaggagtagaagtataggcccgactttacatcggtctcctttttgcta
cttggttcctttgttaaaaccgcaatagaagaaataatattgtggctctt
gattgatcagctgactggaagtctctgactcgccttcacaatccatccct
ctacatactgtcctagGTAAGGAGTTCGCCCAGCTCGTATCCCGTCATAA
CCCAGCGTACGTAGCGGCTTGTTTCGACGGGCGCAGAGACGACGTTTTTC
GCAGGGCACTCTTCCCTGGATACAAACAAAACCGAGACGCACAACCAGCC
GAGCTTCTTGCATTGGTCCCCCGGGCAATGACATATCTGAGGGCCTTAGG
ATGCGTGTCCTTTCGGTCCCCCATCCACGAAGGAGACGATCTGATGGGCA
CACTTTCGCATCTTGCCTGCACCCTGTCCCCGAATGTAACCACCATCCTT
GTGACCGAAGATAAGGACATGATGTGCCTCGTGAGCGATCAAGGAAAGAC
GTTTGTCATGCATCCACGAACTCTTCAAATATTCGATGAAGCCGCTGTCG
AAAGCAAGATGGGGGTGCCTCCCTCCCTTGTTGCTGACCTTCTCTGCTTA
GCCGGTGACCCCGTTGATGGCATCCCCGGTGTGAAAGGTGTAGGGCCACA
AACAGCTGTGAGGCTCTTAAGAGCATTCGGCTCACTCGATAATCTATACG
CAAATCTGGATGCCGTCGCGGCCGTGCCCAATTTAAGGGGGGCGAAGACC
CTAGCAGAGAAATTACGCAAACAAAAAGAGGACGTGTGGATATACCGTTC
TGTTGTCGCCCTTGCTTGCGATGTAAAGCTAGAGCTTCCAATGTTGTCGT
CGCCCTCCTCCTCGTCCTGGGTGTCTTTGGAACATTTAAGGTATTTGGGA
GTTGACGAGGTGGAGGGGGAGGCGCTGATGGAGGAAGCGATGGGTGCTAA
AGGGGTGGGGAAAGGACCTTTTTTGAAGTTGTTGAAGGAACAGCAACGGC
CGTCGGTGCCATTTTGAGTCAATACAGGAAGAATTTAGAACAAACTTAGC
TTCTGTAGTACACGACTGATAAAGAGAATCACACAAACAAT
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protein sequence of NO05G02400.1

>NO05G02400.1-protein ID=NO05G02400.1-protein|Name=NO05G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MPGVKCRCKKRESRGKMKRSRSYARRSQKVGGVNSSKSSAHYYRNNVLIP
IWRPLIRLFMALALTLAASKLCQTVCAVTTATSTFITRPLLSRVASLTSS
VLSSSSSSSSPWSSRIPPPIAIQPAPSSEFFFILDATSLLYRSYFSKYQL
NDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGY
KQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACT
LSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPP
SLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAA
VPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPMLSSPSSSSWV
SLEHLRYLGVDEVEGEALMEEAMGAKGVGKGPFLKLLKEQQRPSVPF*
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Synonyms
Publications