NO05G02400.1, NO05G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02400.1
Unique NameNO05G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1948
Alignment locationchr5:639921..642061 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:639921..642061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02400.1 vs.
Match: EWM28117.1 (dna polymerase i [Nannochloropsis gaditana])

HSP 1 Score: 461.1 bits (1185), Expect = 4.000e-126
Identity = 252/388 (64.95%), Postives = 301/388 (77.58%), Query Frame = 0 
Query:   61 ALALTLAASKLCQTVCAVTTATSTFITRPLLSRVASLTSSVLSSSSSSSSPWSSRIPPPIAIQPAPSSEFFFILDATSLLYRSYFSKYQLNDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGYKQNRDAQPAELLALVPRAMTYLRALGCVS-FRSPIHEGDDLMGTLSHLACTLSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPPSLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAAVPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPMLSSPSSSSWVSLEHLRYLGVDEVEGEALMEEAMGAKGVGKGPFLKLLKEQQRPSVPF 448
            A+++    + L + +  + T++S  +  P L   A  T +  SSSSS S+  S R P      P P+   FFILDATS LYRSY+SKYQLNDY+ + D+PLLLLGKEFAQ++++HNPAYVAA FDG RD VFRR LFP YK+NR+AQP ELLALVPRAM YL ALGC   FRS  HEGDDLMG+LSH+A  ++P+VT +LVTEDKDM CLV D  +T VMHPRTL++FD A VE+K+GVPPSLV DLL LAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANL+ VAA+PNLRGAKTLA KL +QKEDV +YRSVVALACDV L+LP    P  +    LE LRY GVDE+EGE+L+ EAMGA G+G+GPFL+LL+ Q++ SVPF
Sbjct:   44 AVSMASRTAFLFRHLSLLPTSSSAALP-PHLPWGALPTITPFSSSSSKSTQMSPRTPN----MPVPTENCFFILDATSFLYRSYYSKYQLNDYE-ETDRPLLLLGKEFAQIMTQHNPAYVAAAFDGPRDQVFRRDLFPAYKRNREAQPPELLALVPRAMAYLEALGCRGVFRSTRHEGDDLMGSLSHMAKAVAPDVTVVLVTEDKDMFCLVDD--RTLVMHPRTLEVFDAARVEAKLGVPPSLVGDLLSLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLEDVAALPNLRGAKTLAAKLTQQKEDVRVYRSVVALACDVALQLPRAPDPRWTGTSPLEGLRYGGVDEIEGESLLLEAMGAPGIGRGPFLQLLRHQRQRSVPF 423
The following BLAST results are available for this feature:
BLAST of NO05G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28117.14.000e-12664.95dna polymerase i [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02400NO05G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02400.1NO05G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02400.1.cds1NO05G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02400.1.cds2NO05G02400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02400.1 ID=NO05G02400.1|Name=NO05G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1948bp
TGGGGGAAGGCTGGGGGGTGCGTGGTGGGGCAGAAACTTCCTTGAAGGAG
GAGGGTTATCATCGCTCCCAGCTGGGCATAATTGAGGCTTGCCAGCCTCG
CGGGGGCGAATGTAGTGGTTTGCGATAAGGGGAGTGGGGGGAGGGTGTGG
GGGTGTTCTGTCTTGAGATGCACGCTCTTCTCGGTTTCTCGATGAAGAGG
GCCATGTCCTTTCGTGTGCGTTGTTCATGACGAGATGCACGAAATGTGAA
TTGATCCAAATGATGTCTTGTTGGCCTACCGATTACGATTTCTTGGAAAT
GAATTAGATAGTTTTTTTGGTTCAAAAAAGAAAAAGAAAAAAAGATGGGG
TAACCCAGCCGGCCTGTATCAAATATCGCCGTAGAACATCACAAACCTTT
CCCTTCACAGGGAATAGGGAGTAATGGTGACGGTTTGTGCAGTCTCAGCC
ACTCACCATAATCTGACGATGCCCCTTTCTGCGTCACCACAAACCGCCCA
GAATCAGATGATGTCACGCAGAGGAGGGGTATGCCGGGTGTGAAGTGCCG
TTGTAAGAAACGTGAGAGTCGTGGGAAGATGAAGCGGAGTCGGTCATATG
CTCGTCGCTCTCAAAAGGTCGGTGGCGTCAATAGCAGCAAATCTAGCGCC
CACTACTATCGCAACAATGTCCTGATTCCCATCTGGAGACCACTAATTCG
CCTATTCATGGCCCTCGCCCTGACATTAGCCGCTTCGAAGCTTTGCCAAA
CCGTATGCGCGGTCACGACTGCTACAAGCACCTTCATCACTCGCCCGTTG
TTATCGAGAGTGGCCTCCCTCACTTCCTCTGTTCTGTCCTCTTCCAGCTC
CTCATCCTCTCCCTGGTCCTCGCGCATCCCTCCACCAATAGCCATCCAGC
CCGCGCCCTCATCAGAATTCTTTTTCATCCTGGACGCCACAAGCCTTCTT
TACCGTTCATACTTCTCCAAGTATCAGCTCAACGACTACGATGGGAAAAT
CGACAAACCACTGCTATTACTGGGTAAGGAGTTCGCCCAGCTCGTATCCC
GTCATAACCCAGCGTACGTAGCGGCTTGTTTCGACGGGCGCAGAGACGAC
GTTTTTCGCAGGGCACTCTTCCCTGGATACAAACAAAACCGAGACGCACA
ACCAGCCGAGCTTCTTGCATTGGTCCCCCGGGCAATGACATATCTGAGGG
CCTTAGGATGCGTGTCCTTTCGGTCCCCCATCCACGAAGGAGACGATCTG
ATGGGCACACTTTCGCATCTTGCCTGCACCCTGTCCCCGAATGTAACCAC
CATCCTTGTGACCGAAGATAAGGACATGATGTGCCTCGTGAGCGATCAAG
GAAAGACGTTTGTCATGCATCCACGAACTCTTCAAATATTCGATGAAGCC
GCTGTCGAAAGCAAGATGGGGGTGCCTCCCTCCCTTGTTGCTGACCTTCT
CTGCTTAGCCGGTGACCCCGTTGATGGCATCCCCGGTGTGAAAGGTGTAG
GGCCACAAACAGCTGTGAGGCTCTTAAGAGCATTCGGCTCACTCGATAAT
CTATACGCAAATCTGGATGCCGTCGCGGCCGTGCCCAATTTAAGGGGGGC
GAAGACCCTAGCAGAGAAATTACGCAAACAAAAAGAGGACGTGTGGATAT
ACCGTTCTGTTGTCGCCCTTGCTTGCGATGTAAAGCTAGAGCTTCCAATG
TTGTCGTCGCCCTCCTCCTCGTCCTGGGTGTCTTTGGAACATTTAAGGTA
TTTGGGAGTTGACGAGGTGGAGGGGGAGGCGCTGATGGAGGAAGCGATGG
GTGCTAAAGGGGTGGGGAAAGGACCTTTTTTGAAGTTGTTGAAGGAACAG
CAACGGCCGTCGGTGCCATTTTGAGTCAATACAGGAAGAATTTAGAACAA
ACTTAGCTTCTGTAGTACACGACTGATAAAGAGAATCACACAAACAAT
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protein sequence of NO05G02400.1

>NO05G02400.1-protein ID=NO05G02400.1-protein|Name=NO05G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MPGVKCRCKKRESRGKMKRSRSYARRSQKVGGVNSSKSSAHYYRNNVLIP
IWRPLIRLFMALALTLAASKLCQTVCAVTTATSTFITRPLLSRVASLTSS
VLSSSSSSSSPWSSRIPPPIAIQPAPSSEFFFILDATSLLYRSYFSKYQL
NDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGY
KQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACT
LSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPP
SLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAA
VPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPMLSSPSSSSWV
SLEHLRYLGVDEVEGEALMEEAMGAKGVGKGPFLKLLKEQQRPSVPF*
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mRNA from alignment at chr5:639921..642061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02400.1 ID=NO05G02400.1|Name=NO05G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2141bp|location=Sequence derived from alignment at chr5:639921..642061- (Nannochloropsis oceanica)
TGGGGGAAGGCTGGGGGGTGCGTGGTGGGGCAGAAACTTCCTTGAAGGAG
GAGGGTTATCATCGCTCCCAGCTGGGCATAATTGAGGCTTGCCAGCCTCG
CGGGGGCGAATGTAGTGGTTTGCGATAAGGGGAGTGGGGGGAGGGTGTGG
GGGTGTTCTGTCTTGAGATGCACGCTCTTCTCGGTTTCTCGATGAAGAGG
GCCATGTCCTTTCGTGTGCGTTGTTCATGACGAGATGCACGAAATGTGAA
TTGATCCAAATGATGTCTTGTTGGCCTACCGATTACGATTTCTTGGAAAT
GAATTAGATAGTTTTTTTGGTTCAAAAAAGAAAAAGAAAAAAAGATGGGG
TAACCCAGCCGGCCTGTATCAAATATCGCCGTAGAACATCACAAACCTTT
CCCTTCACAGGGAATAGGGAGTAATGGTGACGGTTTGTGCAGTCTCAGCC
ACTCACCATAATCTGACGATGCCCCTTTCTGCGTCACCACAAACCGCCCA
GAATCAGATGATGTCACGCAGAGGAGGGGTATGCCGGGTGTGAAGTGCCG
TTGTAAGAAACGTGAGAGTCGTGGGAAGATGAAGCGGAGTCGGTCATATG
CTCGTCGCTCTCAAAAGGTCGGTGGCGTCAATAGCAGCAAATCTAGCGCC
CACTACTATCGCAACAATGTCCTGATTCCCATCTGGAGACCACTAATTCG
CCTATTCATGGCCCTCGCCCTGACATTAGCCGCTTCGAAGCTTTGCCAAA
CCGTATGCGCGGTCACGACTGCTACAAGCACCTTCATCACTCGCCCGTTG
TTATCGAGAGTGGCCTCCCTCACTTCCTCTGTTCTGTCCTCTTCCAGCTC
CTCATCCTCTCCCTGGTCCTCGCGCATCCCTCCACCAATAGCCATCCAGC
CCGCGCCCTCATCAGAATTCTTTTTCATCCTGGACGCCACAAGCCTTCTT
TACCGTTCATACTTCTCCAAGTATCAGCTCAACGACTACGATGGGAAAAT
CGACAAACCACTGCTATTACTGGGTAGGCTGGAAGAAAGGGATAGAGGGT
GAGAGGAGTAGAAGTATAGGCCCGACTTTACATCGGTCTCCTTTTTGCTA
CTTGGTTCCTTTGTTAAAACCGCAATAGAAGAAATAATATTGTGGCTCTT
GATTGATCAGCTGACTGGAAGTCTCTGACTCGCCTTCACAATCCATCCCT
CTACATACTGTCCTAGGTAAGGAGTTCGCCCAGCTCGTATCCCGTCATAA
CCCAGCGTACGTAGCGGCTTGTTTCGACGGGCGCAGAGACGACGTTTTTC
GCAGGGCACTCTTCCCTGGATACAAACAAAACCGAGACGCACAACCAGCC
GAGCTTCTTGCATTGGTCCCCCGGGCAATGACATATCTGAGGGCCTTAGG
ATGCGTGTCCTTTCGGTCCCCCATCCACGAAGGAGACGATCTGATGGGCA
CACTTTCGCATCTTGCCTGCACCCTGTCCCCGAATGTAACCACCATCCTT
GTGACCGAAGATAAGGACATGATGTGCCTCGTGAGCGATCAAGGAAAGAC
GTTTGTCATGCATCCACGAACTCTTCAAATATTCGATGAAGCCGCTGTCG
AAAGCAAGATGGGGGTGCCTCCCTCCCTTGTTGCTGACCTTCTCTGCTTA
GCCGGTGACCCCGTTGATGGCATCCCCGGTGTGAAAGGTGTAGGGCCACA
AACAGCTGTGAGGCTCTTAAGAGCATTCGGCTCACTCGATAATCTATACG
CAAATCTGGATGCCGTCGCGGCCGTGCCCAATTTAAGGGGGGCGAAGACC
CTAGCAGAGAAATTACGCAAACAAAAAGAGGACGTGTGGATATACCGTTC
TGTTGTCGCCCTTGCTTGCGATGTAAAGCTAGAGCTTCCAATGTTGTCGT
CGCCCTCCTCCTCGTCCTGGGTGTCTTTGGAACATTTAAGGTATTTGGGA
GTTGACGAGGTGGAGGGGGAGGCGCTGATGGAGGAAGCGATGGGTGCTAA
AGGGGTGGGGAAAGGACCTTTTTTGAAGTTGTTGAAGGAACAGCAACGGC
CGTCGGTGCCATTTTGAGTCAATACAGGAAGAATTTAGAACAAACTTAGC
TTCTGTAGTACACGACTGATAAAGAGAATCACACAAACAAT
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Coding sequence (CDS) from alignment at chr5:639921..642061-

>NO05G02400.1 ID=NO05G02400.1|Name=NO05G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr5:639921..642061- (Nannochloropsis oceanica)
ATGCCGGGTGTGAAGTGCCGTTGTAAGAAACGTGAGAGTCGTGGGAAGAT
GAAGCGGAGTCGGTCATATGCTCGTCGCTCTCAAAAGGTCGGTGGCGTCA
ATAGCAGCAAATCTAGCGCCCACTACTATCGCAACAATGTCCTGATTCCC
ATCTGGAGACCACTAATTCGCCTATTCATGGCCCTCGCCCTGACATTAGC
CGCTTCGAAGCTTTGCCAAACCGTATGCGCGGTCACGACTGCTACAAGCA
CCTTCATCACTCGCCCGTTGTTATCGAGAGTGGCCTCCCTCACTTCCTCT
GTTCTGTCCTCTTCCAGCTCCTCATCCTCTCCCTGGTCCTCGCGCATCCC
TCCACCAATAGCCATCCAGCCCGCGCCCTCATCAGAATTCTTTTTCATCC
TGGACGCCACAAGCCTTCTTTACCGTTCATACTTCTCCAAGTATCAGCTC
AACGACTACGATGGGAAAATCGACAAACCACTGCTATTACTGGGTAAGGA
GTTCGCCCAGCTCGTATCCCGTCATAACCCAGCGTACGTAGCGGCTTGTT
TCGACGGGCGCAGAGACGACGTTTTTCGCAGGGCACTCTTCCCTGGATAC
AAACAAAACCGAGACGCACAACCAGCCGAGCTTCTTGCATTGGTCCCCCG
GGCAATGACATATCTGAGGGCCTTAGGATGCGTGTCCTTTCGGTCCCCCA
TCCACGAAGGAGACGATCTGATGGGCACACTTTCGCATCTTGCCTGCACC
CTGTCCCCGAATGTAACCACCATCCTTGTGACCGAAGATAAGGACATGAT
GTGCCTCGTGAGCGATCAAGGAAAGACGTTTGTCATGCATCCACGAACTC
TTCAAATATTCGATGAAGCCGCTGTCGAAAGCAAGATGGGGGTGCCTCCC
TCCCTTGTTGCTGACCTTCTCTGCTTAGCCGGTGACCCCGTTGATGGCAT
CCCCGGTGTGAAAGGTGTAGGGCCACAAACAGCTGTGAGGCTCTTAAGAG
CATTCGGCTCACTCGATAATCTATACGCAAATCTGGATGCCGTCGCGGCC
GTGCCCAATTTAAGGGGGGCGAAGACCCTAGCAGAGAAATTACGCAAACA
AAAAGAGGACGTGTGGATATACCGTTCTGTTGTCGCCCTTGCTTGCGATG
TAAAGCTAGAGCTTCCAATGTTGTCGTCGCCCTCCTCCTCGTCCTGGGTG
TCTTTGGAACATTTAAGGTATTTGGGAGTTGACGAGGTGGAGGGGGAGGC
GCTGATGGAGGAAGCGATGGGTGCTAAAGGGGTGGGGAAAGGACCTTTTT
TGAAGTTGTTGAAGGAACAGCAACGGCCGTCGGTGCCATTTTGA
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Synonyms
Publications