NO05G02350, NO05G02350 (gene) Nannochloropsis oceanica

Overview
NameNO05G02350
Unique NameNO05G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2214
Alignment locationchr5:621552..623765 +

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Properties
Property NameValue
DescriptionFerredoxin (2fe-2s)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:621552..623765 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO05G02350 vs. NCBI_GenBank
Match: EWM28287.1 (ferredoxin (2fe-2s) [Nannochloropsis gaditana])

HSP 1 Score: 274.6 bits (701), Expect = 2.400e-70
Identity = 135/173 (78.03%), Postives = 146/173 (84.39%), Query Frame = 0
Query:   29 MRIFALAALVCGCSLSVSKAFILPLSGTRGVHCRRTSAVKVVPLELEGQLDPTKSWEVKMTYLGETKVLTVCEDTPILEAALKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 202
            M   AL  L C    S+++AF+  + G R  + +R  A+ VVPLELEGQLDPTK+W+VKMTY GETKVLTV EDT ILEAA KEWDVPCSCRNGICTTCAGR+IA P SKKEAIHGLSAEQSKNGFVLTCQTHP GPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG
Sbjct:    1 MHSLALTLLAC-FIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 172          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: EWM27804.1 (phenylacetate- oxygenase subunit [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 7.100e-30
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 0
Query:   70 VPLELEGQLDPTKSWEVKMTYLGETKVLTVCEDTPILEAALKEW-DVPCSCRNGICTTCAGRII-AMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKKA--TTEQKSKFNVF 201
            VP +LEG+LDP + W+V M+  GETK ++V E T +L+AA + + D PC CRNG+CTTCA  +     GS   AI  LS EQ ++GF+L+CQT+P GPGLEV L   + VYESQY +YEKKA    E+K  FN+F
Sbjct:   47 VPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIF 181          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: CEM03311.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 119.4 bits (298), Expect = 1.300e-23
Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 0
Query:   67 VKVVPLELEGQLDPTKSWEVKMTYLGETKVLTVCEDTPILEAALKEW-DVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQ--SKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYE 187
            V  VP++LEG+LDP++SW +++ Y G+ + + V E T +LEAA   W D PC CRNG+CT+CAGRI+     +   I+  S E+     G+VLTCQT+  GPGL+VEL   + VY  QYG++E
Sbjct:    3 VPEVPVDLEGRLDPSRSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: CBJ29495.1 (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 5.100e-12
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 0
Query:   41 CSLSVSKAFILPLSGTRGVHCRRTSAVKVVPLELEGQLDPTKSWEVKMTYLGETKVLTVCEDTPILEA-ALKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKKATTEQKSK 197
            C L ++  F+ P        CRR + +   PL            +VK+T  G  + + + E   IL+     + D P SCR+G+CT CA  + A   + K     L  E S  GFVLTC +   GPG+E+ELG+ D +YE+QYG+  +     Q++K
Sbjct:   12 CMLDLTSGFVFPAPAVS--TCRR-ARMSSSPLRAAN--------DVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAK 157          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: XP_005538458.1 (similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM82422.1 similar to ferredoxin [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 0
Query:   85 EVKMTYLGETKVLTVCEDTPILEA--ALKEW-DVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHP---IGPGLEVELGMYDTVYESQYGQYEKKA 190
            E+ + Y   T+V+       ILEA  A   W +VP SCR G+CTTCA  +++  G  ++    L A   K GF+LTC + P    GP + + LG YD VYE QYG++EK A
Sbjct:   83 EITVEYQDRTEVVRCQPGQSILEAVEASGLWTEVPSSCRAGVCTTCAAWLLS--GDVEDPFAALDANIRKEGFILTCSSTPKADAGP-VRIRLGAYDQVYEMQYGRFEKAA 190          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: WP_054466915.1 (ferredoxin [Planktothricoides sp. SR001] >KOR36039.1 ferredoxin [Planktothricoides sp. SR001])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 0
Query:   82 KSWEVKMTYLGETKVLTVCEDTPILEAA-LKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQ 185
            K++ V++ + GET  LTV ED  I+E A      +P SC  G+CTTCAG+II     ++    GLS E  K G+VL C  +P    L++E    D VY+ Q+G+
Sbjct:    3 KTYTVEIHHQGETHTLTVAEDQKIIEVAEASGLHLPNSCNAGVCTTCAGKIIGEGSVEQSEGMGLSPELQKEGYVLLCVAYP-RSDLKIETEKEDEVYDRQFGR 105          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: WP_099532141.1 (ferredoxin [Limnothrix sp. PR1529] >OCQ95833.1 ferredoxin [Limnothrix sp. P13C2] >OKY73216.1 ferredoxin [Limnothrix sp. CACIAM 69d] >PIB14820.1 ferredoxin [Limnothrix sp. PR1529])

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-10
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0
Query:   83 SWEVKMTYLGETKVLTVCEDTPILEAALKE-WDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEK 188
            +++V++ + G+T VL V +DTPIL AA      +P SC  G+CTTCA R++       +++ GLS +    GF L C   P    L+++ G  D VYE Q+GQ++K
Sbjct:    4 TYQVEIQHEGQTHVLQVADDTPILTAAAAAGLTLPSSCNAGVCTTCAARVVEGTIEPGDSM-GLSPDLRTKGFALLCTAKP-RSNLKIQTGCEDEVYELQFGQFQK 107          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: AFZ12828.1 (ferredoxin (2Fe-2S) [Crinalium epipsammum PCC 9333])

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-10
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   78 LDPTKSWEVKMTYLGETKVLTVCEDTPILEAA-LKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKK 189
            L   K + V++ + G T  L V ED  I+ AA     D+P SC  G+CTTCAGRII     + E + G+S E  + G+VL C  +P    L++E    D +YE Q+GQ++K+
Sbjct:    8 LSMPKMYTVQIEHQGNTHTLQVPEDQIIIRAASAAGLDLPSSCNAGVCTTCAGRIIEGKVDQAEGM-GVSPELQEKGYVLLCVAYP-RSDLKIESEKEDELYELQFGQFQKR 117          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: WP_041226527.1 (ferredoxin [Crinalium epipsammum])

HSP 1 Score: 74.7 bits (182), Expect = 3.600e-10
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0
Query:   82 KSWEVKMTYLGETKVLTVCEDTPILEAA-LKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKK 189
            K + V++ + G T  L V ED  I+ AA     D+P SC  G+CTTCAGRII     + E + G+S E  + G+VL C  +P    L++E    D +YE Q+GQ++K+
Sbjct:    3 KMYTVQIEHQGNTHTLQVPEDQIIIRAASAAGLDLPSSCNAGVCTTCAGRIIEGKVDQAEGM-GVSPELQEKGYVLLCVAYP-RSDLKIESEKEDELYELQFGQFQKR 108          
BLAST of NO05G02350 vs. NCBI_GenBank
Match: WP_007353149.1 (MULTISPECIES: ferredoxin [Kamptonema] >CBN53922.1 ferredoxin (2Fe-2S) [[Oscillatoria] sp. PCC 6506])

HSP 1 Score: 73.6 bits (179), Expect = 8.100e-10
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0
Query:   82 KSWEVKM--TYLGETKVLTVCEDTPILEAALKEW-DVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQY 186
            +S+ +K+     G+ + + V ED  IL +A  +  D+P SCRNG CTTCA R++A    + EA+ GLS E  K G+ L C ++P    +EVE    D VYE Q+GQY
Sbjct:    3 RSYSIKIYNRQTGDRRTVQVPEDRYILHSAENQGVDLPFSCRNGACTTCAVRLLAGEVHQPEAM-GLSVELQKQGYALLCVSYPC-CDIEVETQDEDEVYELQFGQY 107          
The following BLAST results are available for this feature:
BLAST of NO05G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28287.12.400e-7078.03ferredoxin (2fe-2s) [Nannochloropsis gaditana][more]
EWM27804.17.100e-3052.59phenylacetate- oxygenase subunit [Nannochloropsis ... [more]
CEM03311.11.300e-2347.15unnamed protein product [Vitrella brassicaformis C... [more]
CBJ29495.15.100e-1233.12ferredoxin [Ectocarpus siliculosus][more]
XP_005538458.11.300e-1041.44similar to ferredoxin [Cyanidioschyzon merolae str... [more]
WP_054466915.11.300e-1040.38ferredoxin [Planktothricoides sp. SR001] >KOR36039... [more]
WP_099532141.11.300e-1038.68ferredoxin [Limnothrix sp. PR1529] >OCQ95833.1 fer... [more]
AFZ12828.12.800e-1039.29ferredoxin (2Fe-2S) [Crinalium epipsammum PCC 9333... [more]
WP_041226527.13.600e-1039.81ferredoxin [Crinalium epipsammum][more]
WP_007353149.18.100e-1042.06MULTISPECIES: ferredoxin [Kamptonema] >CBN53922.1 ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003631NSK003631Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02350.1NO05G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638187gene_3036Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g160gene2405Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02350.1NO05G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02350 ID=NO05G02350|Name=NO05G02350|organism=Nannochloropsis oceanica|type=gene|length=2214bp
CGAATCCAACGCAGAGATGATCCTATACGTTTGTGAGTACATTGTGAGTG
TGAGCTTGCGTAGGGCTTGAGAAGGGCATTCACACGGTGAAATGGATGAT
ATGGTGAATTGGACGGAACCTGCGACACGGAATTCCGAGCTGCAGGTTTC
GTCGTCGTAGTATGATATGAGCTGGGGATTGGATCTTCTTGATGTAGTTC
TTTTCTGTCGTAGCTATTCTACAATCCTAGAACTATCGCATGCAGCCTGA
CGTCCTCTAGGAATTGCGTACGAGGGGAAGCCTTCCAACAATAAAATGTT
GCATATTCGTCCCCTTATTCTTGCGGGAGTTGgtaagtgactttaccttg
aaagctttttcacgtagcaagcaaagtagggcagtatatacacgcccgga
actccacagtttcacggtgtcgactcttggtatgttggattgcaatcaag
gcctcgtcacacttttttggtgtcctaaaagacgagtgagtggtgcggtg
gtgaggagtgctggatgtagcagggtgccccatgcatgcagtatactcat
ttgcttccctctgtctagCTGGCACAACCCCACACCACACAGAAAATCCC
CATCAAGAAGCCGTCATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCGG
CTGCAGCCTCAGCGTCTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACCA
GAGGGGTCCATTGCCGAAGgtaagtcttccgactgcagggcgggggtgtc
cttgtcccatgcgagccacgcaagctaacattcctctctcccaccctgaa
cagAACTTCGGCTGTCAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTTG
ACCCCACCAAgtaagtcgtatactgactcgtgaataatatctcggacagc
ctacggcaagagcgagttttatatggctccttcaaagaacatgcaaatga
aggaaggcaaaaaatgtgactatgtcgatattcattgttatcctgcagtg
ctatgtatcttcccccttgacagtcgcatgtgccaacccatcccacctct
tggaccgtcttttgtccttgtccagcgccttgtctcacacgaccttttct
atttaaaccaaaaacccgctctggacacagATCGTGGGAGGTGAAGATGA
CGTATCTCGGAGAGACCAAGGTGCTGACCGTTTGTGAGGACACCCCAATC
TTGGAGGCTGCCCTAAAGgtaggtgttgcccaaatgagactctcccgatg
acactctggagggggccttaatcagagagggcgataagggaggaagcggg
cacattgtttggtttactgcaaagattggaggatacagcataaaatgtct
tataattctaactatacatattccccttgaccaaaagGAGTGGGACGTGC
CTTGCTCTTGCCGCAACGGAATTTGCACCACGTGCGCAGGCCGTATCATT
GCCATGCCGGGCTCGAAAAAGgtaagcactagctttacgttaatttgaaa
ggggggaagccctgttgcgtgaggggcaggcacgccgcttgtggcaccgt
tgctttttcccatcgacacaataaccattcccctcccccttctcccttgc
ccacaccgtttctaccccatcacagGAGGCTATCCACGGGCTTTCAGCCG
AGCAGTCCAAGAATGGTTTCGTGCTCACCTGCCAGACGCACCCCATCGGG
CCGGGCTTGGAGGTGGAGTTGGGCATGTATGACACCGTCTACGAGTCACA
GTACGGCCAGTACGAAAAGAAGgtgggtgatgcgtaattaaggaaaggtg
ggggggtacactttgcgtggaagcgtgaacagcacctatgcttggagaga
cgtgtttcgtcaggcatctccattgtcatcattctcgctggcgaatttta
cacgccaccatttcaattgccccgattaaattcacagGCTACCACGGAGC
AAAAGAGCAAGTTCAATGTCTTCGGCTAAGTGCATGACAAGGCAAAGAGG
CTCGGACCTCTGTTGCTGACTGAAACGAGTGATATGCGTGAATGCATTTA
TGGTGGCATGCAGAGGACACACAGGTGCGGGGATGATCCCCAACGGAGTT
TTGTACCGCTTCGACGCTTAAGAAAAGGGGATACGCCTGAAGTACCGCAG
ACGACCTTTCAAAAAATTAATCCAAGGAAGCAAAGGGAAAAAACAAGTGG
TAACTCCTCGTTTG
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protein sequence of NO05G02350.1

>NO05G02350.1-protein ID=NO05G02350.1-protein|Name=NO05G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MLHIRPLILAGVAGTTPHHTENPHQEAVMRIFALAALVCGCSLSVSKAFI
LPLSGTRGVHCRRTSAVKVVPLELEGQLDPTKSWEVKMTYLGETKVLTVC
EDTPILEAALKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQS
KNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVF
G*
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Synonyms
Publications