NO05G02350.1, NO05G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02350.1
Unique NameNO05G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1136
Alignment locationchr5:621552..623765 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:621552..623765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02350.1 vs.
Match: EWM28287.1 (ferredoxin (2fe-2s) [Nannochloropsis gaditana])

HSP 1 Score: 274.6 bits (701), Expect = 2.400e-70
Identity = 135/173 (78.03%), Postives = 146/173 (84.39%), Query Frame = 0 
Query:   29 MRIFALAALVCGCSLSVSKAFILPLSGTRGVHCRRTSAVKVVPLELEGQLDPTKSWEVKMTYLGETKVLTVCEDTPILEAALKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQSKNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 202
            M   AL  L C    S+++AF+  + G R  + +R  A+ VVPLELEGQLDPTK+W+VKMTY GETKVLTV EDT ILEAA KEWDVPCSCRNGICTTCAGR+IA P SKKEAIHGLSAEQSKNGFVLTCQTHP GPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG
Sbjct:    1 MHSLALTLLACFI-FSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 172
The following BLAST results are available for this feature:
BLAST of NO05G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28287.12.400e-7078.03ferredoxin (2fe-2s) [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02350NO05G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02350.1NO05G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02350.1.cds1NO05G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02350.1.cds2NO05G02350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02350.1.cds3NO05G02350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02350.1.cds4NO05G02350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02350.1.cds5NO05G02350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02350.1.cds6NO05G02350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02350.1.cds7NO05G02350.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02350.1 ID=NO05G02350.1|Name=NO05G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1136bp
CGAATCCAACGCAGAGATGATCCTATACGTTTGTGAGTACATTGTGAGTG
TGAGCTTGCGTAGGGCTTGAGAAGGGCATTCACACGGTGAAATGGATGAT
ATGGTGAATTGGACGGAACCTGCGACACGGAATTCCGAGCTGCAGGTTTC
GTCGTCGTAGTATGATATGAGCTGGGGATTGGATCTTCTTGATGTAGTTC
TTTTCTGTCGTAGCTATTCTACAATCCTAGAACTATCGCATGCAGCCTGA
CGTCCTCTAGGAATTGCGTACGAGGGGAAGCCTTCCAACAATAAAATGTT
GCATATTCGTCCCCTTATTCTTGCGGGAGTTGCTGGCACAACCCCACACC
ACACAGAAAATCCCCATCAAGAAGCCGTCATGCGTATATTCGCTCTTGCG
GCGTTGGTTTGCGGCTGCAGCCTCAGCGTCTCGAAAGCCTTCATCCTTCC
CTTGTCCGGCACCAGAGGGGTCCATTGCCGAAGAACTTCGGCTGTCAAAG
TTGTACCGCTTGAGCTCGAAGGCCAACTTGACCCCACCAAATCGTGGGAG
GTGAAGATGACGTATCTCGGAGAGACCAAGGTGCTGACCGTTTGTGAGGA
CACCCCAATCTTGGAGGCTGCCCTAAAGGAGTGGGACGTGCCTTGCTCTT
GCCGCAACGGAATTTGCACCACGTGCGCAGGCCGTATCATTGCCATGCCG
GGCTCGAAAAAGGAGGCTATCCACGGGCTTTCAGCCGAGCAGTCCAAGAA
TGGTTTCGTGCTCACCTGCCAGACGCACCCCATCGGGCCGGGCTTGGAGG
TGGAGTTGGGCATGTATGACACCGTCTACGAGTCACAGTACGGCCAGTAC
GAAAAGAAGGCTACCACGGAGCAAAAGAGCAAGTTCAATGTCTTCGGCTA
AGTGCATGACAAGGCAAAGAGGCTCGGACCTCTGTTGCTGACTGAAACGA
GTGATATGCGTGAATGCATTTATGGTGGCATGCAGAGGACACACAGGTGC
GGGGATGATCCCCAACGGAGTTTTGTACCGCTTCGACGCTTAAGAAAAGG
GGATACGCCTGAAGTACCGCAGACGACCTTTCAAAAAATTAATCCAAGGA
AGCAAAGGGAAAAAACAAGTGGTAACTCCTCGTTTG
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protein sequence of NO05G02350.1

>NO05G02350.1-protein ID=NO05G02350.1-protein|Name=NO05G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MLHIRPLILAGVAGTTPHHTENPHQEAVMRIFALAALVCGCSLSVSKAFI
LPLSGTRGVHCRRTSAVKVVPLELEGQLDPTKSWEVKMTYLGETKVLTVC
EDTPILEAALKEWDVPCSCRNGICTTCAGRIIAMPGSKKEAIHGLSAEQS
KNGFVLTCQTHPIGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVF
G*
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mRNA from alignment at chr5:621552..623765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02350.1 ID=NO05G02350.1|Name=NO05G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at chr5:621552..623765+ (Nannochloropsis oceanica)
CGAATCCAACGCAGAGATGATCCTATACGTTTGTGAGTACATTGTGAGTG
TGAGCTTGCGTAGGGCTTGAGAAGGGCATTCACACGGTGAAATGGATGAT
ATGGTGAATTGGACGGAACCTGCGACACGGAATTCCGAGCTGCAGGTTTC
GTCGTCGTAGTATGATATGAGCTGGGGATTGGATCTTCTTGATGTAGTTC
TTTTCTGTCGTAGCTATTCTACAATCCTAGAACTATCGCATGCAGCCTGA
CGTCCTCTAGGAATTGCGTACGAGGGGAAGCCTTCCAACAATAAAATGTT
GCATATTCGTCCCCTTATTCTTGCGGGAGTTGGTAAGTGACTTTACCTTG
AAAGCTTTTTCACGTAGCAAGCAAAGTAGGGCAGTATATACACGCCCGGA
ACTCCACAGTTTCACGGTGTCGACTCTTGGTATGTTGGATTGCAATCAAG
GCCTCGTCACACTTTTTTGGTGTCCTAAAAGACGAGTGAGTGGTGCGGTG
GTGAGGAGTGCTGGATGTAGCAGGGTGCCCCATGCATGCAGTATACTCAT
TTGCTTCCCTCTGTCTAGCTGGCACAACCCCACACCACACAGAAAATCCC
CATCAAGAAGCCGTCATGCGTATATTCGCTCTTGCGGCGTTGGTTTGCGG
CTGCAGCCTCAGCGTCTCGAAAGCCTTCATCCTTCCCTTGTCCGGCACCA
GAGGGGTCCATTGCCGAAGGTAAGTCTTCCGACTGCAGGGCGGGGGTGTC
CTTGTCCCATGCGAGCCACGCAAGCTAACATTCCTCTCTCCCACCCTGAA
CAGAACTTCGGCTGTCAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTTG
ACCCCACCAAGTAAGTCGTATACTGACTCGTGAATAATATCTCGGACAGC
CTACGGCAAGAGCGAGTTTTATATGGCTCCTTCAAAGAACATGCAAATGA
AGGAAGGCAAAAAATGTGACTATGTCGATATTCATTGTTATCCTGCAGTG
CTATGTATCTTCCCCCTTGACAGTCGCATGTGCCAACCCATCCCACCTCT
TGGACCGTCTTTTGTCCTTGTCCAGCGCCTTGTCTCACACGACCTTTTCT
ATTTAAACCAAAAACCCGCTCTGGACACAGATCGTGGGAGGTGAAGATGA
CGTATCTCGGAGAGACCAAGGTGCTGACCGTTTGTGAGGACACCCCAATC
TTGGAGGCTGCCCTAAAGGTAGGTGTTGCCCAAATGAGACTCTCCCGATG
ACACTCTGGAGGGGGCCTTAATCAGAGAGGGCGATAAGGGAGGAAGCGGG
CACATTGTTTGGTTTACTGCAAAGATTGGAGGATACAGCATAAAATGTCT
TATAATTCTAACTATACATATTCCCCTTGACCAAAAGGAGTGGGACGTGC
CTTGCTCTTGCCGCAACGGAATTTGCACCACGTGCGCAGGCCGTATCATT
GCCATGCCGGGCTCGAAAAAGGTAAGCACTAGCTTTACGTTAATTTGAAA
GGGGGGAAGCCCTGTTGCGTGAGGGGCAGGCACGCCGCTTGTGGCACCGT
TGCTTTTTCCCATCGACACAATAACCATTCCCCTCCCCCTTCTCCCTTGC
CCACACCGTTTCTACCCCATCACAGGAGGCTATCCACGGGCTTTCAGCCG
AGCAGTCCAAGAATGGTTTCGTGCTCACCTGCCAGACGCACCCCATCGGG
CCGGGCTTGGAGGTGGAGTTGGGCATGTATGACACCGTCTACGAGTCACA
GTACGGCCAGTACGAAAAGAAGGTGGGTGATGCGTAATTAAGGAAAGGTG
GGGGGGTACACTTTGCGTGGAAGCGTGAACAGCACCTATGCTTGGAGAGA
CGTGTTTCGTCAGGCATCTCCATTGTCATCATTCTCGCTGGCGAATTTTA
CACGCCACCATTTCAATTGCCCCGATTAAATTCACAGGCTACCACGGAGC
AAAAGAGCAAGTTCAATGTCTTCGGCTAAGTGCATGACAAGGCAAAGAGG
CTCGGACCTCTGTTGCTGACTGAAACGAGTGATATGCGTGAATGCATTTA
TGGTGGCATGCAGAGGACACACAGGTGCGGGGATGATCCCCAACGGAGTT
TTGTACCGCTTCGACGCTTAAGAAAAGGGGATACGCCTGAAGTACCGCAG
ACGACCTTTCAAAAAATTAATCCAAGGAAGCAAAGGGAAAAAACAAGTGG
TAACTCCTCGTTTG
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Coding sequence (CDS) from alignment at chr5:621552..623765+

>NO05G02350.1 ID=NO05G02350.1|Name=NO05G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr5:621552..623765+ (Nannochloropsis oceanica)
ATGTTGCATATTCGTCCCCTTATTCTTGCGGGAGTTGCTGGCACAACCCC
ACACCACACAGAAAATCCCCATCAAGAAGCCGTCATGCGTATATTCGCTC
TTGCGGCGTTGGTTTGCGGCTGCAGCCTCAGCGTCTCGAAAGCCTTCATC
CTTCCCTTGTCCGGCACCAGAGGGGTCCATTGCCGAAGAACTTCGGCTGT
CAAAGTTGTACCGCTTGAGCTCGAAGGCCAACTTGACCCCACCAAATCGT
GGGAGGTGAAGATGACGTATCTCGGAGAGACCAAGGTGCTGACCGTTTGT
GAGGACACCCCAATCTTGGAGGCTGCCCTAAAGGAGTGGGACGTGCCTTG
CTCTTGCCGCAACGGAATTTGCACCACGTGCGCAGGCCGTATCATTGCCA
TGCCGGGCTCGAAAAAGGAGGCTATCCACGGGCTTTCAGCCGAGCAGTCC
AAGAATGGTTTCGTGCTCACCTGCCAGACGCACCCCATCGGGCCGGGCTT
GGAGGTGGAGTTGGGCATGTATGACACCGTCTACGAGTCACAGTACGGCC
AGTACGAAAAGAAGGCTACCACGGAGCAAAAGAGCAAGTTCAATGTCTTC
GGCTAA
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Synonyms
Publications