NO05G02320, NO05G02320 (gene) Nannochloropsis oceanica

Overview
NameNO05G02320
Unique NameNO05G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1504
Alignment locationchr5:614542..616045 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:614542..616045 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019341Alpha/Gamma-adaptin-bd_p34
Homology
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BLAST of NO05G02320 vs. NCBI_GenBank
Match: EWM28225.1 (hypothetical protein Naga_100004g156 [Nannochloropsis gaditana])

HSP 1 Score: 161.0 bits (406), Expect = 6.800e-36
Identity = 120/356 (33.71%), Postives = 178/356 (50.00%), Query Frame = 0 
Query:    5 ATPRNKLLVVG-SSADSDCRGSRSSSGSSGEHNITHPARFVASLMAGGKQRXXXXXXXXXXXXXXXSVVFWTIETKYYKAELALHLAAKAGSPSGGQPKQEKESFPFFAPGKDFQGIIVVWKGGGSPGENEISGLKEIEPWLRAASAQDSLKLCLVVGILDSNSKD---AERPSGRALEXXXXXXXXXXXSVWCLKYGFEYVEVDYTRQVRMLPKELREKEGLERVCECIEATSWQYIDCCS----SGRSLCCRPGEPDEKVCEQPQDKAGSLASDQNDVNLTCRTRLGHSNVAEGTQDKHGEEWEDDAGLERLFAKFHAERERAHSGQYDDEQRRARAAEMALQFALKLGIFEDD 353
            + P N+LL++G    ++ C GS      +   NI     F     A   +R                V+ WT++TKYY A+LA+ +      P+ G  +  ++       G   QG+I+V+     PGE+  S L +IEPWLRAA +++ L+L LVVG+ D N      AE+  G  L+           +VWCL+YGFEYV +D  +Q+ +   ELR+++GL+RV ECIEAT+W++I   S      R+      E   K   +   K  S A  +  +       L  + VA     K G + ED+  ++ LF   HA +  A  GQY D  RRARAA++AL+FA  LGIF+D+
Sbjct:    3 SAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKR---------TVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGD-RGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQ--------HKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVA---GYKAGSDEEDETAVDELFDMLHAVQSSA--GQYSDTDRRARAADVALRFAQSLGIFDDE 335
The following BLAST results are available for this feature:
BLAST of NO05G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28225.16.800e-3633.71hypothetical protein Naga_100004g156 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003634NSK003634Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02320.1NO05G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584273gene_3033Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g156gene2402Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02320.1NO05G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02320 ID=NO05G02320|Name=NO05G02320|organism=Nannochloropsis oceanica|type=gene|length=1504bp
AGCCAGGTCTTGCCCATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCT
CGTTGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTA
GCGGTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGCTTTGTGGCC
TCCTTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCT
CAACCAAGgtacgccccgggagagtgatggtgcatacatcccttttcctc
gctcgcatcacctctcttgtcttgttggcccacgtcaaaatgtttccctt
acccttagATCCTGACGATGACAGTGTGGTATTTTGGACAATCGAGACCA
AGTACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCT
CCTAGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGC
GCCTGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTT
CCCCCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAACCATGgtac
gtaaatgcttagaagatgagagaacggttcgtcgacacctagagatttct
tacttatttttgcaccacagGCTACGGGCCGCAAGTGCTCAAGACAGTTT
AAAGCTTTGCCTGGTCGTTGGCATACTCGACAGCAATAGCAAGGATGCAG
AGAGGCCGTCTGGGCGGGCGCTCGAGGATGATGACGACGACTCAATGCAG
CGGCGGCGCTCCGTCTGgtaactgaaagattcttaaaactcatgtattat
ccaaataatacaattggctaccagaatacaagcctatcatcattgacccc
atcccttgtaccctgcagGTGCCTGAAGTATGGCTTCGAGTACGTGGAGG
TGGACTACACGCGGCAGGTTCGGATGTTGCCGAAGGAGTTGCGGGAGAAG
GAAGGGCTGGAGCGTGTCTGCGAGTGCATCGAGGCGACATCTTGGCAGTA
CATTGATTGTTGCTCGAGTGGCAGGTCTCTTTGCTGCAGGCCTGGGGAGC
CGGACGAAAAGGTCTGTGAGCAGCCGCAAGATAAAGCGGGCTCCTTGGCC
TCAGATCAGAATGACGTGAACTTGACCTGCCGGACACGCCTTGGCCATAG
CAACGTTGCCGAGGGGACTCAAGATAAGCATGGAGAAGAGTGGGAAGATG
ACGCGGGATTAGAACGGCTATTTGCGAAGTTTCATGCTGAGAGGGAGAGA
GCTCACAGTGGTCAGTACGATGACGAGCAGCGAAGAGCGAGGGCAGCGGA
GATGGCCCTTCAATTCGCTCTAAAGCTTGGCATCTTTGAAGATGATGCGT
AGCGTAAGATGGTCAGTAAGTGTTGTGGTAGAGAAAAAATATACTGGGCC
TTGGCACGTACAGTTCTGGAACGAAGCCGATAAGGAACCCGGGGTGGGCA
TTGGGGGGGGGGCCGGGGGAACCCGAGGGCGAGCTTCAAAAAAATAAAAA
AGAG
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protein sequence of NO05G02320.1

>NO05G02320.1-protein ID=NO05G02320.1-protein|Name=NO05G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MAKSATPRNKLLVVGSSADSDCRGSRSSSGSSGEHNITHPARFVASLMAG
GKQREAEEEEQLNQDPDDDSVVFWTIETKYYKAELALHLAAKAGSPSGGQ
PKQEKESFPFFAPGKDFQGIIVVWKGGGSPGENEISGLKEIEPWLRAASA
QDSLKLCLVVGILDSNSKDAERPSGRALEDDDDDSMQRRRSVWCLKYGFE
YVEVDYTRQVRMLPKELREKEGLERVCECIEATSWQYIDCCSSGRSLCCR
PGEPDEKVCEQPQDKAGSLASDQNDVNLTCRTRLGHSNVAEGTQDKHGEE
WEDDAGLERLFAKFHAERERAHSGQYDDEQRRARAAEMALQFALKLGIFE
DDA*
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Synonyms
Publications