NO05G02320.1, NO05G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02320.1
Unique NameNO05G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1229
Alignment locationchr5:614542..616045 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:614542..616045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02320.1 vs.
Match: EWM28225.1 (hypothetical protein Naga_100004g156 [Nannochloropsis gaditana])

HSP 1 Score: 179.1 bits (453), Expect = 2.400e-41
Identity = 126/355 (35.49%), Postives = 191/355 (53.80%), Query Frame = 0 
Query:    5 ATPRNKLLVVGSSADSDCRGSRSSSGSSGEHNITHPAR-FVASLMAGGK-QREAEEEEQLNQDPDDDSVVFWTIETKYYKAELALHLAAKAGSPSGGQPKQEKESFPFFAPGKDFQGIIVVWKGGGSPGENEISGLKEIEPWLRAASAQDSLKLCLVVGILDSNSKDAERPSGRAL-EDDDDDSMQRRRSVWCLKYGFEYVEVDYTRQVRMLPKELREKEGLERVCECIEATSWQYIDCCS----SGRSLCCRPGEPDEKVCEQPQDKAGSLASDQNDVNLTCRTRLGHSNVAEGTQDKHGEEWEDDAGLERLFAKFHAERERAHSGQYDDEQRRARAAEMALQFALKLGIFEDD 353
            + P N+LL++G       RG+ ++   S EH    P R ++ +++A      E   EE      D   V+ WT++TKYY A+LA+ +      P+ G  +  ++       G   QG+I+V+     PGE+  S L +IEPWLRAA +++ L+L LVVG+ D N      P  R L E ++ + +Q +R+VWCL+YGFEYV +D  +Q+ +   ELR+++GL+RV ECIEAT+W++I   S      R+      E   K   +   K  S A  +  +       L  + VA     K G + ED+  ++ LF   HA +  A  GQY D  RRARAA++AL+FA  LGIF+D+
Sbjct:    3 SAPANELLILG------LRGNENTCSGSMEH----PMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGD-RGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGN------PCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVA---GYKAGSDEEDETAVDELFDMLHAVQSSA--GQYSDTDRRARAADVALRFAQSLGIFDDE 335
The following BLAST results are available for this feature:
BLAST of NO05G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28225.12.400e-4135.49hypothetical protein Naga_100004g156 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02320NO05G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02320.1NO05G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02320.1.cds1NO05G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02320.1.cds2NO05G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02320.1.cds3NO05G02320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02320.1.cds4NO05G02320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02320.1 ID=NO05G02320.1|Name=NO05G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
AGCCAGGTCTTGCCCATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCT
CGTTGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTA
GCGGTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGCTTTGTGGCC
TCCTTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCT
CAACCAAGATCCTGACGATGACAGTGTGGTATTTTGGACAATCGAGACCA
AGTACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCT
CCTAGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGC
GCCTGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTT
CCCCCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAACCATGGCTA
CGGGCCGCAAGTGCTCAAGACAGTTTAAAGCTTTGCCTGGTCGTTGGCAT
ACTCGACAGCAATAGCAAGGATGCAGAGAGGCCGTCTGGGCGGGCGCTCG
AGGATGATGACGACGACTCAATGCAGCGGCGGCGCTCCGTCTGGTGCCTG
AAGTATGGCTTCGAGTACGTGGAGGTGGACTACACGCGGCAGGTTCGGAT
GTTGCCGAAGGAGTTGCGGGAGAAGGAAGGGCTGGAGCGTGTCTGCGAGT
GCATCGAGGCGACATCTTGGCAGTACATTGATTGTTGCTCGAGTGGCAGG
TCTCTTTGCTGCAGGCCTGGGGAGCCGGACGAAAAGGTCTGTGAGCAGCC
GCAAGATAAAGCGGGCTCCTTGGCCTCAGATCAGAATGACGTGAACTTGA
CCTGCCGGACACGCCTTGGCCATAGCAACGTTGCCGAGGGGACTCAAGAT
AAGCATGGAGAAGAGTGGGAAGATGACGCGGGATTAGAACGGCTATTTGC
GAAGTTTCATGCTGAGAGGGAGAGAGCTCACAGTGGTCAGTACGATGACG
AGCAGCGAAGAGCGAGGGCAGCGGAGATGGCCCTTCAATTCGCTCTAAAG
CTTGGCATCTTTGAAGATGATGCGTAGCGTAAGATGGTCAGTAAGTGTTG
TGGTAGAGAAAAAATATACTGGGCCTTGGCACGTACAGTTCTGGAACGAA
GCCGATAAGGAACCCGGGGTGGGCATTGGGGGGGGGGCCGGGGGAACCCG
AGGGCGAGCTTCAAAAAAATAAAAAAGAG
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protein sequence of NO05G02320.1

>NO05G02320.1-protein ID=NO05G02320.1-protein|Name=NO05G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MAKSATPRNKLLVVGSSADSDCRGSRSSSGSSGEHNITHPARFVASLMAG
GKQREAEEEEQLNQDPDDDSVVFWTIETKYYKAELALHLAAKAGSPSGGQ
PKQEKESFPFFAPGKDFQGIIVVWKGGGSPGENEISGLKEIEPWLRAASA
QDSLKLCLVVGILDSNSKDAERPSGRALEDDDDDSMQRRRSVWCLKYGFE
YVEVDYTRQVRMLPKELREKEGLERVCECIEATSWQYIDCCSSGRSLCCR
PGEPDEKVCEQPQDKAGSLASDQNDVNLTCRTRLGHSNVAEGTQDKHGEE
WEDDAGLERLFAKFHAERERAHSGQYDDEQRRARAAEMALQFALKLGIFE
DDA*
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mRNA from alignment at chr5:614542..616045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02320.1 ID=NO05G02320.1|Name=NO05G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp|location=Sequence derived from alignment at chr5:614542..616045+ (Nannochloropsis oceanica)
AGCCAGGTCTTGCCCATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCT
CGTTGTCGGGAGCAGTGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTA
GCGGTAGCAGTGGTGAACACAATATAACGCATCCAGCCCGCTTTGTGGCC
TCCTTGATGGCTGGTGGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCT
CAACCAAGGTACGCCCCGGGAGAGTGATGGTGCATACATCCCTTTTCCTC
GCTCGCATCACCTCTCTTGTCTTGTTGGCCCACGTCAAAATGTTTCCCTT
ACCCTTAGATCCTGACGATGACAGTGTGGTATTTTGGACAATCGAGACCA
AGTACTACAAGGCCGAGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCT
CCTAGTGGCGGGCAACCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGC
GCCTGGGAAAGACTTTCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTT
CCCCCGGTGAGAACGAGATATCGGGGTTGAAAGAGATTGAACCATGGTAC
GTAAATGCTTAGAAGATGAGAGAACGGTTCGTCGACACCTAGAGATTTCT
TACTTATTTTTGCACCACAGGCTACGGGCCGCAAGTGCTCAAGACAGTTT
AAAGCTTTGCCTGGTCGTTGGCATACTCGACAGCAATAGCAAGGATGCAG
AGAGGCCGTCTGGGCGGGCGCTCGAGGATGATGACGACGACTCAATGCAG
CGGCGGCGCTCCGTCTGGTAACTGAAAGATTCTTAAAACTCATGTATTAT
CCAAATAATACAATTGGCTACCAGAATACAAGCCTATCATCATTGACCCC
ATCCCTTGTACCCTGCAGGTGCCTGAAGTATGGCTTCGAGTACGTGGAGG
TGGACTACACGCGGCAGGTTCGGATGTTGCCGAAGGAGTTGCGGGAGAAG
GAAGGGCTGGAGCGTGTCTGCGAGTGCATCGAGGCGACATCTTGGCAGTA
CATTGATTGTTGCTCGAGTGGCAGGTCTCTTTGCTGCAGGCCTGGGGAGC
CGGACGAAAAGGTCTGTGAGCAGCCGCAAGATAAAGCGGGCTCCTTGGCC
TCAGATCAGAATGACGTGAACTTGACCTGCCGGACACGCCTTGGCCATAG
CAACGTTGCCGAGGGGACTCAAGATAAGCATGGAGAAGAGTGGGAAGATG
ACGCGGGATTAGAACGGCTATTTGCGAAGTTTCATGCTGAGAGGGAGAGA
GCTCACAGTGGTCAGTACGATGACGAGCAGCGAAGAGCGAGGGCAGCGGA
GATGGCCCTTCAATTCGCTCTAAAGCTTGGCATCTTTGAAGATGATGCGT
AGCGTAAGATGGTCAGTAAGTGTTGTGGTAGAGAAAAAATATACTGGGCC
TTGGCACGTACAGTTCTGGAACGAAGCCGATAAGGAACCCGGGGTGGGCA
TTGGGGGGGGGGCCGGGGGAACCCGAGGGCGAGCTTCAAAAAAATAAAAA
AGAG
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Coding sequence (CDS) from alignment at chr5:614542..616045+

>NO05G02320.1 ID=NO05G02320.1|Name=NO05G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr5:614542..616045+ (Nannochloropsis oceanica)
ATGGCAAAAAGCGCCACTCCAAGGAACAAGCTGCTCGTTGTCGGGAGCAG
TGCCGACTCGGACTGCAGAGGCAGCAGAAGTAGTAGCGGTAGCAGTGGTG
AACACAATATAACGCATCCAGCCCGCTTTGTGGCCTCCTTGATGGCTGGT
GGGAAGCAGCGGGAGGCGGAGGAAGAGGAGCAGCTCAACCAAGATCCTGA
CGATGACAGTGTGGTATTTTGGACAATCGAGACCAAGTACTACAAGGCCG
AGCTTGCGCTCCACCTTGCTGCGAAGGCGGGATCTCCTAGTGGCGGGCAA
CCGAAGCAGGAAAAGGAATCTTTCCCCTTTTTTGCGCCTGGGAAAGACTT
TCAAGGTATAATTGTTGTTTGGAAGGGCGGCGGTTCCCCCGGTGAGAACG
AGATATCGGGGTTGAAAGAGATTGAACCATGGCTACGGGCCGCAAGTGCT
CAAGACAGTTTAAAGCTTTGCCTGGTCGTTGGCATACTCGACAGCAATAG
CAAGGATGCAGAGAGGCCGTCTGGGCGGGCGCTCGAGGATGATGACGACG
ACTCAATGCAGCGGCGGCGCTCCGTCTGGTGCCTGAAGTATGGCTTCGAG
TACGTGGAGGTGGACTACACGCGGCAGGTTCGGATGTTGCCGAAGGAGTT
GCGGGAGAAGGAAGGGCTGGAGCGTGTCTGCGAGTGCATCGAGGCGACAT
CTTGGCAGTACATTGATTGTTGCTCGAGTGGCAGGTCTCTTTGCTGCAGG
CCTGGGGAGCCGGACGAAAAGGTCTGTGAGCAGCCGCAAGATAAAGCGGG
CTCCTTGGCCTCAGATCAGAATGACGTGAACTTGACCTGCCGGACACGCC
TTGGCCATAGCAACGTTGCCGAGGGGACTCAAGATAAGCATGGAGAAGAG
TGGGAAGATGACGCGGGATTAGAACGGCTATTTGCGAAGTTTCATGCTGA
GAGGGAGAGAGCTCACAGTGGTCAGTACGATGACGAGCAGCGAAGAGCGA
GGGCAGCGGAGATGGCCCTTCAATTCGCTCTAAAGCTTGGCATCTTTGAA
GATGATGCGTAG
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Synonyms
Publications