NO05G02270, NO05G02270 (gene) Nannochloropsis oceanica

Overview
NameNO05G02270
Unique NameNO05G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr5:602121..603224 -

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Properties
Property NameValue
DescriptionFerredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:602121..603224 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Homology
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: EWM28231.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 2.800e-49
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 0 
Query:    1 MKLCVLLLIACA-SSALAFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            MK+ +L ++A A S+  AFLP  PRG++   ++    LFGH+VTIE LDGKTH INVESYKSVLEAALDEGIELPHDC+LG CL CAAK++SGTVDQTGSTLDD+V+E+GYALTCC+YPQ+DV IRSIPEDELIDEQFA
Sbjct:    1 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFA 139
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BLAST of NO05G02270 vs. NCBI_GenBank
Match: CBJ33166.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.9 bits (302), Expect = 3.100e-24
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            HQVTIE  +G +  + V+   ++LEAALD  I+LPHDCKLG CL C +KV+SG VDQ+  TL+D+V   GYALTCC Y ++DV IRS+ EDEL+  QF+
Sbjct:   49 HQVTIEH-EGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 146
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BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_004982252.1 (uncharacterized protein LOC101756065 [Setaria italica] >KQK87846.1 hypothetical protein SETIT_037632mg [Setaria italica])

HSP 1 Score: 116.7 bits (291), Expect = 5.800e-23
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 0 
Query:   31 AMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            A R+AP   ++VTIE   G++  + VE  +++L  ALDEG+++PHDCKLG C+ C A+++SG VDQ+   L D V+ +GYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:   82 ASRLAPPRAYKVTIEH-GGESRVVEVEGDETILSRALDEGLDVPHDCKLGVCMTCPARLVSGEVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLQVQLA 188
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BLAST of NO05G02270 vs. NCBI_GenBank
Match: NP_001151112.1 (ferredoxin [Zea mays] >AAT42183.1 putative ferredoxin [Zea mays] >ACG41657.1 ferredoxin [Zea mays] >ACG48586.1 ferredoxin [Zea mays] >ONM07654.1 Ferredoxin [Zea mays])

HSP 1 Score: 115.5 bits (288), Expect = 1.300e-22
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 0 
Query:   30 SAMRVA---PLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            S  R+A   P   ++VTIE   G++  + VE  +++L  ALDEG+++PHDCKLG C+ C A+++SGTVDQ+   L D V+ RGYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:   36 SGARIAAAQPPRAYKVTIEH-GGESRVVEVEEDETILSRALDEGLDVPHDCKLGVCMTCPARLVSGTVDQSDGMLSDDVVARGYALLCAAYPRSDCTIRVIPEDELLKVQLA 146
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: PAN45827.1 (hypothetical protein PAHAL_I02352 [Panicum hallii])

HSP 1 Score: 115.5 bits (288), Expect = 1.300e-22
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 0 
Query:    6 LLLIACASSALAF-LPYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            LL +A  + +  F LP  P     R A    P   ++VTIE   G++  + VE  +++L  ALDEG+++PHDCKLG C+ C A+++SG VDQ+   L D V+ +GYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:   33 LLRLATPTRSPRFGLPSRPAAARPRGARLAPPPRAYKVTIEH-GGESRVVEVEGDETILSRALDEGLDVPHDCKLGVCMTCPARLVSGEVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLQVQLA 165
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_002466721.1 (uncharacterized protein LOC8056764 [Sorghum bicolor] >EER93719.1 hypothetical protein SORBI_3001G147400 [Sorghum bicolor])

HSP 1 Score: 115.2 bits (287), Expect = 1.700e-22
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0 
Query:   36 PLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            P   ++VTIE  DG +  + VE  +++L  ALDEG+E+PHDCKLG C+ C A+++SG VDQ+   L D V+ +GYAL C AYP++D  IR IPEDEL+  Q A
Sbjct:   44 PPRAYKVTIEH-DGASRVVEVEEDETILSRALDEGLEVPHDCKLGVCMTCPARLVSGVVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLKVQLA 145
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: KFK43733.1 (hypothetical protein AALP_AA1G165600 [Arabis alpina])

HSP 1 Score: 114.4 bits (285), Expect = 2.900e-22
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 0 
Query:   39 GHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            G++V +E  DGKT  + VE  +++L  A+DEG+++P+DCKLG C+ C AK+++GTVDQ+   L D V+ERGYAL C +YP +D  I+ IPEDEL+  Q A
Sbjct:   48 GYKVVVEH-DGKTTELEVEPDETILSKAIDEGLDVPYDCKLGVCMTCPAKLVTGTVDQSDGMLSDDVVERGYALLCASYPTSDCHIKMIPEDELLSLQLA 146
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: BAS85578.1 (Os03g0659200, partial [Oryza sativa Japonica Group])

HSP 1 Score: 114.4 bits (285), Expect = 2.900e-22
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 0 
Query:   20 PYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            P T R    R+A    P   ++VTIE   G++  + VE  +++L  ALDEGI++PHDCKLG C+ C A++++G VDQ+   L D V+ +GYAL C +YP++D  IR IPEDEL+  Q A
Sbjct:   18 PTTGRRSPLRAAPAPPPPRAYKVTIEH-GGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQLA 135
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_015627997.1 (PREDICTED: ferredoxin [Oryza sativa Japonica Group] >AAO23095.1 putative ferredoxin [Oryza sativa Japonica Group] >ABF97999.1 ferredoxin family protein, expressed [Oryza sativa Japonica Group] >BAF12731.1 Os03g0659200 [Oryza sativa Japonica Group] >EAY91255.1 hypothetical protein OsI_12871 [Oryza sativa Indica Group] >BAG88377.1 unnamed protein product [Oryza sativa Japonica Group] >BAG97339.1 unnamed protein product [Oryza sativa Japonica Group] >BAS85577.1 Os03g0659200 [Oryza sativa Japonica Group])

HSP 1 Score: 114.4 bits (285), Expect = 2.900e-22
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 0 
Query:   20 PYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            P T R    R+A    P   ++VTIE   G++  + VE  +++L  ALDEGI++PHDCKLG C+ C A++++G VDQ+   L D V+ +GYAL C +YP++D  IR IPEDEL+  Q A
Sbjct:   26 PTTGRRSPLRAAPAPPPPRAYKVTIEH-GGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQLA 143
[Close]
BLAST of NO05G02270 vs. NCBI_GenBank
Match: XP_003610722.1 (uncharacterized protein LOC11441450 [Medicago truncatula] >AES93680.1 2Fe-2S ferredoxin superfamily protein [Medicago truncatula])

HSP 1 Score: 114.4 bits (285), Expect = 2.900e-22
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 0 
Query:   40 HQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            ++V IE  +GKT  + VE  +++L  ALD G+++PHDCKLG C+ C A+++SGTVDQ+   L D V+ERGYAL C +YP++D  IR IPEDEL+  Q A
Sbjct:   52 YKVVIEH-EGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCHIRVIPEDELLSMQLA 149
The following BLAST results are available for this feature:
BLAST of NO05G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28231.12.800e-4972.66ferredoxin [Nannochloropsis gaditana][more]
CBJ33166.13.100e-2456.57conserved unknown protein [Ectocarpus siliculosus][more]
XP_004982252.15.800e-2350.00uncharacterized protein LOC101756065 [Setaria ital... [more]
NP_001151112.11.300e-2250.00ferredoxin [Zea mays] >AAT42183.1 putative ferredo... [more]
PAN45827.11.300e-2244.78hypothetical protein PAHAL_I02352 [Panicum hallii][more]
XP_002466721.11.700e-2251.46uncharacterized protein LOC8056764 [Sorghum bicolo... [more]
KFK43733.12.900e-2251.00hypothetical protein AALP_AA1G165600 [Arabis alpin... [more]
BAS85578.12.900e-2246.22Os03g0659200, partial [Oryza sativa Japonica Group... [more]
XP_015627997.12.900e-2246.22PREDICTED: ferredoxin [Oryza sativa Japonica Group... [more]
XP_003610722.12.900e-2252.53uncharacterized protein LOC11441450 [Medicago trun... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003639NSK003639Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02270.1NO05G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584257gene_3029Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g151gene2397Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02270.1NO05G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02270 ID=NO05G02270|Name=NO05G02270|organism=Nannochloropsis oceanica|type=gene|length=1104bp
AACAACAGAGGTCACTATTACCGTCACCGCAAGAATGAAACTCTGCGTGC
TCCTTCTGATCGCATGCGCCTCATCTGCACTCGgtaagtacgttgactgg
aaagatatgcgttgcactgggagccgggctccgcatggcatctgtttgat
ccaaagagtgggtagggtttggcttcattgtttgaggagtgtataggacg
gtaacacttcggtagatattgttcataggcaggttacagagagccaagcc
tcgtttcagggcacgagattttggcagtggtttgggacgttgcagcacga
cccatttgtttcaagaaggacactaccccaactcgactgacgtgactctt
tacatccgccccacgtcccgtataatagCTTTCCTACCCTATACGCCAAG
AGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCGGGCACC
AGGTGACGATCGAGgtaaattgcaatgtggggggaggttttaaggagggt
agttcatcttgaatcaatagatcaatttaccaatcaatcaatcatcttgg
acaccatgcacagcctgcttttaattcatttatatcttttattcttattt
aactcctcccctttgtcagATGCTGGACGGTAAGACGCACACGATTAACG
TGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTATCGAG
CTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGAAGGT
TCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACGGTTA
TCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGACGTC
GTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTGCTCC
TCTCTAAAGCGTTCGAGTGATTGAAGGGGATCATAAACGGTCAAGATAAA
ATAAAATGAACAAAGAAAGCATTGTGTGACACTCTGTACGATAGTGTGGC
AGGATGCTGGGCTTAAAGGTAGATAAGTACTACACGTGAAGGCAGGTACC
ACACACCGAGAGGAAAGTCACCATATGCGCATATTATACAATTCTTCTCG
AGAT
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protein sequence of NO05G02270.1

>NO05G02270.1-protein ID=NO05G02270.1-protein|Name=NO05G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MKLCVLLLIACASSALAFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGK
THTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGST
LDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFAPL*
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Synonyms
Publications