NO05G02270.1, NO05G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02270.1
Unique NameNO05G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr5:602121..603224 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:602121..603224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02270.1 vs.
Match: EWM28231.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 2.800e-49
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 0
Query:    1 MKLCVLLLIACA-SSALAFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGKTHTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGSTLDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFA 139
            MK+ +L ++A A S+  AFLP  PRG++   ++    LFGH+VTIE LDGKTH INVESYKSVLEAALDEGIELPHDC+LG CL CAAK++SGTVDQTGSTLDD+V+E+GYALTCC+YPQ+DV IRSIPEDELIDEQFA
Sbjct:    1 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFA 139          
The following BLAST results are available for this feature:
BLAST of NO05G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28231.12.800e-4972.66ferredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02270NO05G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02270.1NO05G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02270.1.cds1NO05G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02270.1.cds2NO05G02270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02270.1.cds3NO05G02270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02270.1 ID=NO05G02270.1|Name=NO05G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
AACAACAGAGGTCACTATTACCGTCACCGCAAGAATGAAACTCTGCGTGC
TCCTTCTGATCGCATGCGCCTCATCTGCACTCGCTTTCCTACCCTATACG
CCAAGAGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCGG
GCACCAGGTGACGATCGAGATGCTGGACGGTAAGACGCACACGATTAACG
TGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTATCGAG
CTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGAAGGT
TCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACGGTTA
TCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGACGTC
GTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTGCTCC
TCTCTAAAGCGTTCGAGTGATTGAAGGGGATCATAAACGGTCAAGATAAA
ATAAAATGAACAAAGAAAGCATTGTGTGACACTCTGTACGATAGTGTGGC
AGGATGCTGGGCTTAAAGGTAGATAAGTACTACACGTGAAGGCAGGTACC
ACACACCGAGAGGAAAGTCACCATATGCGCATATTATACAATTCTTCTCG
AGAT
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protein sequence of NO05G02270.1

>NO05G02270.1-protein ID=NO05G02270.1-protein|Name=NO05G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MKLCVLLLIACASSALAFLPYTPRGIAARSAMRVAPLFGHQVTIEMLDGK
THTINVESYKSVLEAALDEGIELPHDCKLGACLACAAKVLSGTVDQTGST
LDDTVIERGYALTCCAYPQTDVVIRSIPEDELIDEQFAPL*
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mRNA from alignment at chr5:602121..603224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02270.1 ID=NO05G02270.1|Name=NO05G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at chr5:602121..603224- (Nannochloropsis oceanica)
AACAACAGAGGTCACTATTACCGTCACCGCAAGAATGAAACTCTGCGTGC TCCTTCTGATCGCATGCGCCTCATCTGCACTCGGTAAGTACGTTGACTGG AAAGATATGCGTTGCACTGGGAGCCGGGCTCCGCATGGCATCTGTTTGAT CCAAAGAGTGGGTAGGGTTTGGCTTCATTGTTTGAGGAGTGTATAGGACG GTAACACTTCGGTAGATATTGTTCATAGGCAGGTTACAGAGAGCCAAGCC TCGTTTCAGGGCACGAGATTTTGGCAGTGGTTTGGGACGTTGCAGCACGA CCCATTTGTTTCAAGAAGGACACTACCCCAACTCGACTGACGTGACTCTT TACATCCGCCCCACGTCCCGTATAATAGCTTTCCTACCCTATACGCCAAG AGGCATCGCAGCTCGTTCTGCAATGCGGGTCGCTCCGCTATTCGGGCACC AGGTGACGATCGAGGTAAATTGCAATGTGGGGGGAGGTTTTAAGGAGGGT AGTTCATCTTGAATCAATAGATCAATTTACCAATCAATCAATCATCTTGG ACACCATGCACAGCCTGCTTTTAATTCATTTATATCTTTTATTCTTATTT AACTCCTCCCCTTTGTCAGATGCTGGACGGTAAGACGCACACGATTAACG TGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCTAGACGAGGGTATCGAG CTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGGCCTGCGCAGCGAAGGT TCTTTCGGGTACGGTAGATCAGACGGGCTCGACACTGGACGACACGGTTA TCGAGCGGGGCTATGCACTCACCTGCTGCGCCTACCCTCAGACAGACGTC GTTATCCGCTCCATCCCTGAGGACGAGCTGATCGACGAGCAGTTTGCTCC TCTCTAAAGCGTTCGAGTGATTGAAGGGGATCATAAACGGTCAAGATAAA ATAAAATGAACAAAGAAAGCATTGTGTGACACTCTGTACGATAGTGTGGC AGGATGCTGGGCTTAAAGGTAGATAAGTACTACACGTGAAGGCAGGTACC ACACACCGAGAGGAAAGTCACCATATGCGCATATTATACAATTCTTCTCG AGAT
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Coding sequence (CDS) from alignment at chr5:602121..603224-

>NO05G02270.1 ID=NO05G02270.1|Name=NO05G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr5:602121..603224- (Nannochloropsis oceanica)
ATGAAACTCTGCGTGCTCCTTCTGATCGCATGCGCCTCATCTGCACTCGC
TTTCCTACCCTATACGCCAAGAGGCATCGCAGCTCGTTCTGCAATGCGGG
TCGCTCCGCTATTCGGGCACCAGGTGACGATCGAGATGCTGGACGGTAAG
ACGCACACGATTAACGTGGAATCTTATAAGTCGGTGCTAGAGGCAGCCCT
AGACGAGGGTATCGAGCTGCCCCACGATTGCAAGCTAGGCGCCTGCTTGG
CCTGCGCAGCGAAGGTTCTTTCGGGTACGGTAGATCAGACGGGCTCGACA
CTGGACGACACGGTTATCGAGCGGGGCTATGCACTCACCTGCTGCGCCTA
CCCTCAGACAGACGTCGTTATCCGCTCCATCCCTGAGGACGAGCTGATCG
ACGAGCAGTTTGCTCCTCTCTAA
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Synonyms
Publications