NO05G02090, NO05G02090 (gene) Nannochloropsis oceanica

Overview
NameNO05G02090
Unique NameNO05G02090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1640
Alignment locationchr5:563347..564986 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:563347..564986 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G02090 vs. NCBI_GenBank
Match: EWM28291.1 (hypothetical protein Naga_100004g132 [Nannochloropsis gaditana])

HSP 1 Score: 178.3 bits (451), Expect = 3.400e-41
Identity = 104/216 (48.15%), Postives = 131/216 (60.65%), Query Frame = 0 
Query:   14 GPSAGKMKKVIIKLLENNDYNPGITLGQIRNKLQKKFVDKYPAFDFSSVAFKVHSRALIEEVIHAYEEVTRAG-----TAGDTSGNGAAKATVGKXXXXXXXXXXXXXXXXXXXXXXXXXXXKVKVEGHAEG-GGKSAEQPPDPRLVRLKKLATAMGLVPGIYKDFGVMDVEEKVKALRQRLHAKGAVFDILPSLDQIKAAEEAYKLRKDLEGIDA 224
            GPSAGKM+KV+ KLLENNDYNPGITLGQIRNKL+KK  DKYP FDF+S AFK+ SR++IE+VIHA+EEV  +G     T G TS   A +  +                              +K   +  G    S  Q  DPR+ RL KLA AMGL+P I++    +D EEKVK LR RL  KGAVFD LPS++QIKAA+ +   ++  + ID+
Sbjct:   76 GPSAGKMRKVVFKLLENNDYNPGITLGQIRNKLEKKLGDKYPGFDFASFAFKIKSRSVIEDVIHAFEEVAYSGIHLAPTKGSTS-TAANRIAIKAQKVEEKRSFKSSDNSGNVSKKQRTEELSLKEGRNITGKDTTSGRQQQDPRIQRLAKLAVAMGLMPAIFEGLEDVDDEEKVKMLRHRLKTKGAVFDNLPSIEQIKAAQASNSPQRVSQSIDS 290
The following BLAST results are available for this feature:
BLAST of NO05G02090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28291.13.400e-4148.15hypothetical protein Naga_100004g132 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003654NSK003654Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02090.1NO05G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584138gene_3011Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g132gene2382Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02090.1NO05G02090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02090 ID=NO05G02090|Name=NO05G02090|organism=Nannochloropsis oceanica|type=gene|length=1640bp
GTGATAGAGGTAAGCGGGAGGGACTTCACTATTGTACGTCATCCGCACAT
CACCCAAAAGATTGGGCACAATTCTTTGTGTCGGCGCTGAAAAGACAGGG
GGGCTGCACTTTTCAGTCGCTATCGACACACTAAGGGTTGAGTCATAGTG
CGGTGATGGCTAAAGTCGAAAACAAGAGAGTCAGGAGGGGGTTGACCACA
AAGCGTGGACCGTTGGGGCGCACTCACGTCCTCCCCATCGTCGAGCCCTA
CTATAGTTTTTCGACTGTGCGCTCAGTCATGACACCCAAAGCTCACACAC
TGCCGCTTCACGCAGCCCATCCCTAGTATCCTTGATCCCGCAGTACACGC
GCCTTCCAGTCAGCTACCAAGCTCTTGAAGCGCGTATTCCATCGCACTCC
ATCCGACCCTCAGCCCCCCACGCAACGCTTATGGCGCAGGAAAACGGCGC
TGGCCCAGGGAGAGGGGATGGCCCCTCGGCCGGCAAGATGAAGAAGGTAA
TCATCAAGCTGCTGGAAAACAACGATTACAACCCGGGCATCACGCTGGGT
CAAATCCGCAATAAGCTGCAAAAGAAGTTCGTGGACAAGTACCCAGCCTT
CGATTTCTCCTCGGTTGCCTTCAAGGTTCACTCGCGGGCGCTCATCGAGG
AAGTCATCCACGCCTATGAGGAAGTCACACGAGCCGGTACTGCCGGAGAC
ACTTCGGGGAATGGTGCGGCCAAGGCAACAGTGGGTAAGGACAACAAGGA
GAAGGAGAAGGAGAAGAAACGCACGCACAGTGATCACAACGATACCAGCA
GAGCTGCGGAGGCAACCAAGAAGGTCAAGGTGGAGGGGCATGCTGAAGGA
GGCGGCAAGTCAGCCGAGCAGCCGCCGGATCCCCGGCTTGTACGGCTGAA
GAAACTGGCGACAGCTATGGGGCTGGTTCCTGGCATCTACAAAGACTTTG
GGGTAATGGACGTCGAGGAAAAGGTCAAGGCCTTGCGGCAACGGCTTCAC
GCAAAGGGAGCAGTTTTTGACATTCTGCCCAGTCTTGATCAGATCAAGGC
GGCGGAGGAAGCTTACAAATTGCGAAAAGACTTGGAGGGTATTGATGCCG
GTAATATTGTCATGGGGAAGCGTGGAACTGTAGGTCCGTCAGCCTCAGGT
AGCGCCTCTATCAGTTCATTACCGACGAGCAGCGCTTTATCACTGGCAAT
TAAAGTGTCGCCTTTGAGCGCACTCGAGAAGGAAAAGAAGGGGAATAAAG
AGAACAAATCGAGCGGCGCCGGCACGGAGGGTTCGTCGTCAGAACAGGAG
ATGGACCTTTAGGTTCACGAGGTCAGGGATCACCACCCACAGTCTGTGGG
CCATGCATGCCGTGGAGGAAGTAGGCAGGTGTGGATCATGTGTGTGTAAC
AGTACAAAAAGAGGTAAATGCTTCAAGTATATGTGTATGCGTTGGTGCAG
CGCAAGAAGTAATGGCGAATGACAAAAAGAAAAAATAGACGGCATGGCGT
CGTGTGTTCGACCATGGTTGCTTCCGAGGCCTCGCCCACAAAAAAGAAAT
CGAATAAAAGGAGGCAATGAAGGCATGACTAGATAATTGCTTGGCGTATC
AAAAGGAAAGCCTGTGTAGGTCAAAATTTAAATGCTTCGG
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protein sequence of NO05G02090.1

>NO05G02090.1-protein ID=NO05G02090.1-protein|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MAQENGAGPGRGDGPSAGKMKKVIIKLLENNDYNPGITLGQIRNKLQKKF
VDKYPAFDFSSVAFKVHSRALIEEVIHAYEEVTRAGTAGDTSGNGAAKAT
VGKDNKEKEKEKKRTHSDHNDTSRAAEATKKVKVEGHAEGGGKSAEQPPD
PRLVRLKKLATAMGLVPGIYKDFGVMDVEEKVKALRQRLHAKGAVFDILP
SLDQIKAAEEAYKLRKDLEGIDAGNIVMGKRGTVGPSASGSASISSLPTS
SALSLAIKVSPLSALEKEKKGNKENKSSGAGTEGSSSEQEMDL*
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Synonyms
Publications