NO05G02090.1, NO05G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02090.1
Unique NameNO05G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1640
Alignment locationchr5:563347..564986 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:563347..564986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02090.1 vs.
Match: EWM28291.1 (hypothetical protein Naga_100004g132 [Nannochloropsis gaditana])

HSP 1 Score: 186.0 bits (471), Expect = 1.600e-43
Identity = 112/218 (51.38%), Postives = 146/218 (66.97%), Query Frame = 0
Query:   14 GPSAGKMKKVIIKLLENNDYNPGITLGQIRNKLQKKFVDKYPAFDFSSVAFKVHSRALIEEVIHAYEEVTRAG-----TAGDTSGNGAAKATVGKDNKEKEKEKKRTHSDHNDTSRAAEATKKVKVEGHAEGGGK---SAEQPPDPRLVRLKKLATAMGLVPGIYKDFGVMDVEEKVKALRQRLHAKGAVFDILPSLDQIKAAEEAYKLRKDLEGIDA 224
            GPSAGKM+KV+ KLLENNDYNPGITLGQIRNKL+KK  DKYP FDF+S AFK+ SR++IE+VIHA+EEV  +G     T G TS   AA     K  K +EK   ++ SD++      + T+++ ++      GK   S  Q  DPR+ RL KLA AMGL+P I++    +D EEKVK LR RL  KGAVFD LPS++QIKAA+ +   ++  + ID+
Sbjct:   76 GPSAGKMRKVVFKLLENNDYNPGITLGQIRNKLEKKLGDKYPGFDFASFAFKIKSRSVIEDVIHAFEEVAYSGIHLAPTKGSTS--TAANRIAIKAQKVEEKRSFKS-SDNSGNVSKKQRTEELSLKEGRNITGKDTTSGRQQQDPRIQRLAKLAVAMGLMPAIFEGLEDVDDEEKVKMLRHRLKTKGAVFDNLPSIEQIKAAQASNSPQRVSQSIDS 290          
The following BLAST results are available for this feature:
BLAST of NO05G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28291.11.600e-4351.38hypothetical protein Naga_100004g132 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02090NO05G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02090.1NO05G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02090.1.cds1NO05G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02090.1 ID=NO05G02090.1|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
GTGATAGAGGTAAGCGGGAGGGACTTCACTATTGTACGTCATCCGCACAT
CACCCAAAAGATTGGGCACAATTCTTTGTGTCGGCGCTGAAAAGACAGGG
GGGCTGCACTTTTCAGTCGCTATCGACACACTAAGGGTTGAGTCATAGTG
CGGTGATGGCTAAAGTCGAAAACAAGAGAGTCAGGAGGGGGTTGACCACA
AAGCGTGGACCGTTGGGGCGCACTCACGTCCTCCCCATCGTCGAGCCCTA
CTATAGTTTTTCGACTGTGCGCTCAGTCATGACACCCAAAGCTCACACAC
TGCCGCTTCACGCAGCCCATCCCTAGTATCCTTGATCCCGCAGTACACGC
GCCTTCCAGTCAGCTACCAAGCTCTTGAAGCGCGTATTCCATCGCACTCC
ATCCGACCCTCAGCCCCCCACGCAACGCTTATGGCGCAGGAAAACGGCGC
TGGCCCAGGGAGAGGGGATGGCCCCTCGGCCGGCAAGATGAAGAAGGTAA
TCATCAAGCTGCTGGAAAACAACGATTACAACCCGGGCATCACGCTGGGT
CAAATCCGCAATAAGCTGCAAAAGAAGTTCGTGGACAAGTACCCAGCCTT
CGATTTCTCCTCGGTTGCCTTCAAGGTTCACTCGCGGGCGCTCATCGAGG
AAGTCATCCACGCCTATGAGGAAGTCACACGAGCCGGTACTGCCGGAGAC
ACTTCGGGGAATGGTGCGGCCAAGGCAACAGTGGGTAAGGACAACAAGGA
GAAGGAGAAGGAGAAGAAACGCACGCACAGTGATCACAACGATACCAGCA
GAGCTGCGGAGGCAACCAAGAAGGTCAAGGTGGAGGGGCATGCTGAAGGA
GGCGGCAAGTCAGCCGAGCAGCCGCCGGATCCCCGGCTTGTACGGCTGAA
GAAACTGGCGACAGCTATGGGGCTGGTTCCTGGCATCTACAAAGACTTTG
GGGTAATGGACGTCGAGGAAAAGGTCAAGGCCTTGCGGCAACGGCTTCAC
GCAAAGGGAGCAGTTTTTGACATTCTGCCCAGTCTTGATCAGATCAAGGC
GGCGGAGGAAGCTTACAAATTGCGAAAAGACTTGGAGGGTATTGATGCCG
GTAATATTGTCATGGGGAAGCGTGGAACTGTAGGTCCGTCAGCCTCAGGT
AGCGCCTCTATCAGTTCATTACCGACGAGCAGCGCTTTATCACTGGCAAT
TAAAGTGTCGCCTTTGAGCGCACTCGAGAAGGAAAAGAAGGGGAATAAAG
AGAACAAATCGAGCGGCGCCGGCACGGAGGGTTCGTCGTCAGAACAGGAG
ATGGACCTTTAGGTTCACGAGGTCAGGGATCACCACCCACAGTCTGTGGG
CCATGCATGCCGTGGAGGAAGTAGGCAGGTGTGGATCATGTGTGTGTAAC
AGTACAAAAAGAGGTAAATGCTTCAAGTATATGTGTATGCGTTGGTGCAG
CGCAAGAAGTAATGGCGAATGACAAAAAGAAAAAATAGACGGCATGGCGT
CGTGTGTTCGACCATGGTTGCTTCCGAGGCCTCGCCCACAAAAAAGAAAT
CGAATAAAAGGAGGCAATGAAGGCATGACTAGATAATTGCTTGGCGTATC
AAAAGGAAAGCCTGTGTAGGTCAAAATTTAAATGCTTCGG
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protein sequence of NO05G02090.1

>NO05G02090.1-protein ID=NO05G02090.1-protein|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MAQENGAGPGRGDGPSAGKMKKVIIKLLENNDYNPGITLGQIRNKLQKKF
VDKYPAFDFSSVAFKVHSRALIEEVIHAYEEVTRAGTAGDTSGNGAAKAT
VGKDNKEKEKEKKRTHSDHNDTSRAAEATKKVKVEGHAEGGGKSAEQPPD
PRLVRLKKLATAMGLVPGIYKDFGVMDVEEKVKALRQRLHAKGAVFDILP
SLDQIKAAEEAYKLRKDLEGIDAGNIVMGKRGTVGPSASGSASISSLPTS
SALSLAIKVSPLSALEKEKKGNKENKSSGAGTEGSSSEQEMDL*
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mRNA from alignment at chr5:563347..564986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02090.1 ID=NO05G02090.1|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp|location=Sequence derived from alignment at chr5:563347..564986+ (Nannochloropsis oceanica)
GTGATAGAGGTAAGCGGGAGGGACTTCACTATTGTACGTCATCCGCACAT CACCCAAAAGATTGGGCACAATTCTTTGTGTCGGCGCTGAAAAGACAGGG GGGCTGCACTTTTCAGTCGCTATCGACACACTAAGGGTTGAGTCATAGTG CGGTGATGGCTAAAGTCGAAAACAAGAGAGTCAGGAGGGGGTTGACCACA AAGCGTGGACCGTTGGGGCGCACTCACGTCCTCCCCATCGTCGAGCCCTA CTATAGTTTTTCGACTGTGCGCTCAGTCATGACACCCAAAGCTCACACAC TGCCGCTTCACGCAGCCCATCCCTAGTATCCTTGATCCCGCAGTACACGC GCCTTCCAGTCAGCTACCAAGCTCTTGAAGCGCGTATTCCATCGCACTCC ATCCGACCCTCAGCCCCCCACGCAACGCTTATGGCGCAGGAAAACGGCGC TGGCCCAGGGAGAGGGGATGGCCCCTCGGCCGGCAAGATGAAGAAGGTAA TCATCAAGCTGCTGGAAAACAACGATTACAACCCGGGCATCACGCTGGGT CAAATCCGCAATAAGCTGCAAAAGAAGTTCGTGGACAAGTACCCAGCCTT CGATTTCTCCTCGGTTGCCTTCAAGGTTCACTCGCGGGCGCTCATCGAGG AAGTCATCCACGCCTATGAGGAAGTCACACGAGCCGGTACTGCCGGAGAC ACTTCGGGGAATGGTGCGGCCAAGGCAACAGTGGGTAAGGACAACAAGGA GAAGGAGAAGGAGAAGAAACGCACGCACAGTGATCACAACGATACCAGCA GAGCTGCGGAGGCAACCAAGAAGGTCAAGGTGGAGGGGCATGCTGAAGGA GGCGGCAAGTCAGCCGAGCAGCCGCCGGATCCCCGGCTTGTACGGCTGAA GAAACTGGCGACAGCTATGGGGCTGGTTCCTGGCATCTACAAAGACTTTG GGGTAATGGACGTCGAGGAAAAGGTCAAGGCCTTGCGGCAACGGCTTCAC GCAAAGGGAGCAGTTTTTGACATTCTGCCCAGTCTTGATCAGATCAAGGC GGCGGAGGAAGCTTACAAATTGCGAAAAGACTTGGAGGGTATTGATGCCG GTAATATTGTCATGGGGAAGCGTGGAACTGTAGGTCCGTCAGCCTCAGGT AGCGCCTCTATCAGTTCATTACCGACGAGCAGCGCTTTATCACTGGCAAT TAAAGTGTCGCCTTTGAGCGCACTCGAGAAGGAAAAGAAGGGGAATAAAG AGAACAAATCGAGCGGCGCCGGCACGGAGGGTTCGTCGTCAGAACAGGAG ATGGACCTTTAGGTTCACGAGGTCAGGGATCACCACCCACAGTCTGTGGG CCATGCATGCCGTGGAGGAAGTAGGCAGGTGTGGATCATGTGTGTGTAAC AGTACAAAAAGAGGTAAATGCTTCAAGTATATGTGTATGCGTTGGTGCAG CGCAAGAAGTAATGGCGAATGACAAAAAGAAAAAATAGACGGCATGGCGT CGTGTGTTCGACCATGGTTGCTTCCGAGGCCTCGCCCACAAAAAAGAAAT CGAATAAAAGGAGGCAATGAAGGCATGACTAGATAATTGCTTGGCGTATC AAAAGGAAAGCCTGTGTAGGTCAAAATTTAAATGCTTCGG
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Coding sequence (CDS) from alignment at chr5:563347..564986+

>NO05G02090.1 ID=NO05G02090.1|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr5:563347..564986+ (Nannochloropsis oceanica)
ATGGCGCAGGAAAACGGCGCTGGCCCAGGGAGAGGGGATGGCCCCTCGGC
CGGCAAGATGAAGAAGGTAATCATCAAGCTGCTGGAAAACAACGATTACA
ACCCGGGCATCACGCTGGGTCAAATCCGCAATAAGCTGCAAAAGAAGTTC
GTGGACAAGTACCCAGCCTTCGATTTCTCCTCGGTTGCCTTCAAGGTTCA
CTCGCGGGCGCTCATCGAGGAAGTCATCCACGCCTATGAGGAAGTCACAC
GAGCCGGTACTGCCGGAGACACTTCGGGGAATGGTGCGGCCAAGGCAACA
GTGGGTAAGGACAACAAGGAGAAGGAGAAGGAGAAGAAACGCACGCACAG
TGATCACAACGATACCAGCAGAGCTGCGGAGGCAACCAAGAAGGTCAAGG
TGGAGGGGCATGCTGAAGGAGGCGGCAAGTCAGCCGAGCAGCCGCCGGAT
CCCCGGCTTGTACGGCTGAAGAAACTGGCGACAGCTATGGGGCTGGTTCC
TGGCATCTACAAAGACTTTGGGGTAATGGACGTCGAGGAAAAGGTCAAGG
CCTTGCGGCAACGGCTTCACGCAAAGGGAGCAGTTTTTGACATTCTGCCC
AGTCTTGATCAGATCAAGGCGGCGGAGGAAGCTTACAAATTGCGAAAAGA
CTTGGAGGGTATTGATGCCGGTAATATTGTCATGGGGAAGCGTGGAACTG
TAGGTCCGTCAGCCTCAGGTAGCGCCTCTATCAGTTCATTACCGACGAGC
AGCGCTTTATCACTGGCAATTAAAGTGTCGCCTTTGAGCGCACTCGAGAA
GGAAAAGAAGGGGAATAAAGAGAACAAATCGAGCGGCGCCGGCACGGAGG
GTTCGTCGTCAGAACAGGAGATGGACCTTTAG
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Synonyms
Publications