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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:563347..564986 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02090.1 vs.
Match: EWM28291.1 (hypothetical protein Naga_100004g132 [Nannochloropsis gaditana]) HSP 1 Score: 186.0 bits (471), Expect = 1.600e-43 Identity = 112/218 (51.38%), Postives = 146/218 (66.97%), Query Frame = 0
Query: 14 GPSAGKMKKVIIKLLENNDYNPGITLGQIRNKLQKKFVDKYPAFDFSSVAFKVHSRALIEEVIHAYEEVTRAG-----TAGDTSGNGAAKATVGKDNKEKEKEKKRTHSDHNDTSRAAEATKKVKVEGHAEGGGK---SAEQPPDPRLVRLKKLATAMGLVPGIYKDFGVMDVEEKVKALRQRLHAKGAVFDILPSLDQIKAAEEAYKLRKDLEGIDA 224
GPSAGKM+KV+ KLLENNDYNPGITLGQIRNKL+KK DKYP FDF+S AFK+ SR++IE+VIHA+EEV +G T G TS AA K K +EK ++ SD++ + T+++ ++ GK S Q DPR+ RL KLA AMGL+P I++ +D EEKVK LR RL KGAVFD LPS++QIKAA+ + ++ + ID+
Sbjct: 76 GPSAGKMRKVVFKLLENNDYNPGITLGQIRNKLEKKLGDKYPGFDFASFAFKIKSRSVIEDVIHAFEEVAYSGIHLAPTKGSTS--TAANRIAIKAQKVEEKRSFKS-SDNSGNVSKKQRTEELSLKEGRNITGKDTTSGRQQQDPRIQRLAKLAVAMGLMPAIFEGLEDVDDEEKVKMLRHRLKTKGAVFDNLPSIEQIKAAQASNSPQRVSQSIDS 290
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02090.1 ID=NO05G02090.1|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp GTGATAGAGGTAAGCGGGAGGGACTTCACTATTGTACGTCATCCGCACAT CACCCAAAAGATTGGGCACAATTCTTTGTGTCGGCGCTGAAAAGACAGGG GGGCTGCACTTTTCAGTCGCTATCGACACACTAAGGGTTGAGTCATAGTG CGGTGATGGCTAAAGTCGAAAACAAGAGAGTCAGGAGGGGGTTGACCACA AAGCGTGGACCGTTGGGGCGCACTCACGTCCTCCCCATCGTCGAGCCCTA CTATAGTTTTTCGACTGTGCGCTCAGTCATGACACCCAAAGCTCACACAC TGCCGCTTCACGCAGCCCATCCCTAGTATCCTTGATCCCGCAGTACACGC GCCTTCCAGTCAGCTACCAAGCTCTTGAAGCGCGTATTCCATCGCACTCC ATCCGACCCTCAGCCCCCCACGCAACGCTTATGGCGCAGGAAAACGGCGC TGGCCCAGGGAGAGGGGATGGCCCCTCGGCCGGCAAGATGAAGAAGGTAA TCATCAAGCTGCTGGAAAACAACGATTACAACCCGGGCATCACGCTGGGT CAAATCCGCAATAAGCTGCAAAAGAAGTTCGTGGACAAGTACCCAGCCTT CGATTTCTCCTCGGTTGCCTTCAAGGTTCACTCGCGGGCGCTCATCGAGG AAGTCATCCACGCCTATGAGGAAGTCACACGAGCCGGTACTGCCGGAGAC ACTTCGGGGAATGGTGCGGCCAAGGCAACAGTGGGTAAGGACAACAAGGA GAAGGAGAAGGAGAAGAAACGCACGCACAGTGATCACAACGATACCAGCA GAGCTGCGGAGGCAACCAAGAAGGTCAAGGTGGAGGGGCATGCTGAAGGA GGCGGCAAGTCAGCCGAGCAGCCGCCGGATCCCCGGCTTGTACGGCTGAA GAAACTGGCGACAGCTATGGGGCTGGTTCCTGGCATCTACAAAGACTTTG GGGTAATGGACGTCGAGGAAAAGGTCAAGGCCTTGCGGCAACGGCTTCAC GCAAAGGGAGCAGTTTTTGACATTCTGCCCAGTCTTGATCAGATCAAGGC GGCGGAGGAAGCTTACAAATTGCGAAAAGACTTGGAGGGTATTGATGCCG GTAATATTGTCATGGGGAAGCGTGGAACTGTAGGTCCGTCAGCCTCAGGT AGCGCCTCTATCAGTTCATTACCGACGAGCAGCGCTTTATCACTGGCAAT TAAAGTGTCGCCTTTGAGCGCACTCGAGAAGGAAAAGAAGGGGAATAAAG AGAACAAATCGAGCGGCGCCGGCACGGAGGGTTCGTCGTCAGAACAGGAG ATGGACCTTTAGGTTCACGAGGTCAGGGATCACCACCCACAGTCTGTGGG CCATGCATGCCGTGGAGGAAGTAGGCAGGTGTGGATCATGTGTGTGTAAC AGTACAAAAAGAGGTAAATGCTTCAAGTATATGTGTATGCGTTGGTGCAG CGCAAGAAGTAATGGCGAATGACAAAAAGAAAAAATAGACGGCATGGCGT CGTGTGTTCGACCATGGTTGCTTCCGAGGCCTCGCCCACAAAAAAGAAAT CGAATAAAAGGAGGCAATGAAGGCATGACTAGATAATTGCTTGGCGTATC AAAAGGAAAGCCTGTGTAGGTCAAAATTTAAATGCTTCGG back to topprotein sequence of NO05G02090.1 >NO05G02090.1-protein ID=NO05G02090.1-protein|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp MAQENGAGPGRGDGPSAGKMKKVIIKLLENNDYNPGITLGQIRNKLQKKF VDKYPAFDFSSVAFKVHSRALIEEVIHAYEEVTRAGTAGDTSGNGAAKAT VGKDNKEKEKEKKRTHSDHNDTSRAAEATKKVKVEGHAEGGGKSAEQPPD PRLVRLKKLATAMGLVPGIYKDFGVMDVEEKVKALRQRLHAKGAVFDILP SLDQIKAAEEAYKLRKDLEGIDAGNIVMGKRGTVGPSASGSASISSLPTS SALSLAIKVSPLSALEKEKKGNKENKSSGAGTEGSSSEQEMDL* back to topmRNA from alignment at chr5:563347..564986+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02090.1 ID=NO05G02090.1|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp|location=Sequence derived from alignment at chr5:563347..564986+ (Nannochloropsis oceanica) GTGATAGAGGTAAGCGGGAGGGACTTCACTATTGTACGTCATCCGCACAT
CACCCAAAAGATTGGGCACAATTCTTTGTGTCGGCGCTGAAAAGACAGGG
GGGCTGCACTTTTCAGTCGCTATCGACACACTAAGGGTTGAGTCATAGTG
CGGTGATGGCTAAAGTCGAAAACAAGAGAGTCAGGAGGGGGTTGACCACA
AAGCGTGGACCGTTGGGGCGCACTCACGTCCTCCCCATCGTCGAGCCCTA
CTATAGTTTTTCGACTGTGCGCTCAGTCATGACACCCAAAGCTCACACAC
TGCCGCTTCACGCAGCCCATCCCTAGTATCCTTGATCCCGCAGTACACGC
GCCTTCCAGTCAGCTACCAAGCTCTTGAAGCGCGTATTCCATCGCACTCC
ATCCGACCCTCAGCCCCCCACGCAACGCTTATGGCGCAGGAAAACGGCGC
TGGCCCAGGGAGAGGGGATGGCCCCTCGGCCGGCAAGATGAAGAAGGTAA
TCATCAAGCTGCTGGAAAACAACGATTACAACCCGGGCATCACGCTGGGT
CAAATCCGCAATAAGCTGCAAAAGAAGTTCGTGGACAAGTACCCAGCCTT
CGATTTCTCCTCGGTTGCCTTCAAGGTTCACTCGCGGGCGCTCATCGAGG
AAGTCATCCACGCCTATGAGGAAGTCACACGAGCCGGTACTGCCGGAGAC
ACTTCGGGGAATGGTGCGGCCAAGGCAACAGTGGGTAAGGACAACAAGGA
GAAGGAGAAGGAGAAGAAACGCACGCACAGTGATCACAACGATACCAGCA
GAGCTGCGGAGGCAACCAAGAAGGTCAAGGTGGAGGGGCATGCTGAAGGA
GGCGGCAAGTCAGCCGAGCAGCCGCCGGATCCCCGGCTTGTACGGCTGAA
GAAACTGGCGACAGCTATGGGGCTGGTTCCTGGCATCTACAAAGACTTTG
GGGTAATGGACGTCGAGGAAAAGGTCAAGGCCTTGCGGCAACGGCTTCAC
GCAAAGGGAGCAGTTTTTGACATTCTGCCCAGTCTTGATCAGATCAAGGC
GGCGGAGGAAGCTTACAAATTGCGAAAAGACTTGGAGGGTATTGATGCCG
GTAATATTGTCATGGGGAAGCGTGGAACTGTAGGTCCGTCAGCCTCAGGT
AGCGCCTCTATCAGTTCATTACCGACGAGCAGCGCTTTATCACTGGCAAT
TAAAGTGTCGCCTTTGAGCGCACTCGAGAAGGAAAAGAAGGGGAATAAAG
AGAACAAATCGAGCGGCGCCGGCACGGAGGGTTCGTCGTCAGAACAGGAG
ATGGACCTTTAGGTTCACGAGGTCAGGGATCACCACCCACAGTCTGTGGG
CCATGCATGCCGTGGAGGAAGTAGGCAGGTGTGGATCATGTGTGTGTAAC
AGTACAAAAAGAGGTAAATGCTTCAAGTATATGTGTATGCGTTGGTGCAG
CGCAAGAAGTAATGGCGAATGACAAAAAGAAAAAATAGACGGCATGGCGT
CGTGTGTTCGACCATGGTTGCTTCCGAGGCCTCGCCCACAAAAAAGAAAT
CGAATAAAAGGAGGCAATGAAGGCATGACTAGATAATTGCTTGGCGTATC
AAAAGGAAAGCCTGTGTAGGTCAAAATTTAAATGCTTCGG back to topCoding sequence (CDS) from alignment at chr5:563347..564986+ >NO05G02090.1 ID=NO05G02090.1|Name=NO05G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr5:563347..564986+ (Nannochloropsis oceanica) ATGGCGCAGGAAAACGGCGCTGGCCCAGGGAGAGGGGATGGCCCCTCGGC CGGCAAGATGAAGAAGGTAATCATCAAGCTGCTGGAAAACAACGATTACA ACCCGGGCATCACGCTGGGTCAAATCCGCAATAAGCTGCAAAAGAAGTTC GTGGACAAGTACCCAGCCTTCGATTTCTCCTCGGTTGCCTTCAAGGTTCA CTCGCGGGCGCTCATCGAGGAAGTCATCCACGCCTATGAGGAAGTCACAC GAGCCGGTACTGCCGGAGACACTTCGGGGAATGGTGCGGCCAAGGCAACA GTGGGTAAGGACAACAAGGAGAAGGAGAAGGAGAAGAAACGCACGCACAG TGATCACAACGATACCAGCAGAGCTGCGGAGGCAACCAAGAAGGTCAAGG TGGAGGGGCATGCTGAAGGAGGCGGCAAGTCAGCCGAGCAGCCGCCGGAT CCCCGGCTTGTACGGCTGAAGAAACTGGCGACAGCTATGGGGCTGGTTCC TGGCATCTACAAAGACTTTGGGGTAATGGACGTCGAGGAAAAGGTCAAGG CCTTGCGGCAACGGCTTCACGCAAAGGGAGCAGTTTTTGACATTCTGCCC AGTCTTGATCAGATCAAGGCGGCGGAGGAAGCTTACAAATTGCGAAAAGA CTTGGAGGGTATTGATGCCGGTAATATTGTCATGGGGAAGCGTGGAACTG TAGGTCCGTCAGCCTCAGGTAGCGCCTCTATCAGTTCATTACCGACGAGC AGCGCTTTATCACTGGCAATTAAAGTGTCGCCTTTGAGCGCACTCGAGAA GGAAAAGAAGGGGAATAAAGAGAACAAATCGAGCGGCGCCGGCACGGAGG GTTCGTCGTCAGAACAGGAGATGGACCTTTAG back to top
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