NO05G01860, NO05G01860 (gene) Nannochloropsis oceanica

Overview
NameNO05G01860
Unique NameNO05G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1279
Alignment locationchr5:511513..512791 +

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Properties
Property NameValue
DescriptionThioredoxin f
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:511513..512791 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: XP_005852743.1 (thioredoxin f [Nannochloropsis gaditana CCMP526] >EKU23086.1 thioredoxin f [Nannochloropsis gaditana CCMP526] >EWM28306.1 thioredoxin f [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 2.600e-61
Identity = 120/147 (81.63%), Postives = 132/147 (89.80%), Query Frame = 0 
Query:    4 QNLSFLLLVAAVFLSFSEAFMATPIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV 151
            + L +  L+ AV LS S+AF+A P++SSRA +R Q  R  AVV+ASSPD+FDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMS+RFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI QN+
Sbjct:    3 RTLLYFFLLGAVLLSASDAFVAPPVHSSRA-SRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: EJK49673.1 (hypothetical protein THAOC_31425 [Thalassiosira oceanica])

HSP 1 Score: 149.4 bits (376), Expect = 8.700e-33
Identity = 69/138 (50.00%), Postives = 105/138 (76.09%), Query Frame = 0 
Query:   10 LLVAAVFLSFSEAFMATPIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 147
            + VAA  ++ S AF A  ++ + +G  A +  L AV+D  S   FD  ++ AG+ L+I+DYSTTWCGPCK++APKFDE+S+ + D++F+KVIGD+TP+A +L+KREGVRSVP+FH++KNG+++D ++GA+ E +E  I
Sbjct:   88 IAVAAASVTASMAF-APSMHVNTSGRTAPSRPLQAVLDIDSEAAFDDKISSAGDSLVIIDYSTTWCGPCKVIAPKFDELSDSYPDSIFIKVIGDATPDASKLMKREGVRSVPSFHYFKNGEKIDVVNGANAEAIEAAI 224
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: XP_002287462.1 (thioredoxin f [Thalassiosira pseudonana CCMP1335] >EED94905.1 thioredoxin f [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 148.3 bits (373), Expect = 1.900e-32
Identity = 73/142 (51.41%), Postives = 107/142 (75.35%), Query Frame = 0 
Query:    6 LSFLLLVAAVFLSFSEAFMATPIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 147
            L+ L L AA   + + A  + P+ +      A +  L AVVD +S  EFD  V+GAG+KL+++DYSTTWCGPCK++APKFDE+S+++ D+VF+KVIGD++P+A +L+KREGVRSVP+FH++KNG +VD ++GA+ E +E  I
Sbjct:    5 LTTLCLAAAAASTHAFAPTSLPLRT------AISQPLMAVVDVNSEAEFDAKVSGAGDKLVVIDYSTTWCGPCKVIAPKFDELSDQYPDSVFIKVIGDASPDASKLMKREGVRSVPSFHYFKNGSKVDVVNGANAEAIEAAI 140
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: XP_002180517.1 (thioredoxin f [Phaeodactylum tricornutum CCAP 1055/1] >EEC47925.1 thioredoxin f [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 147.9 bits (372), Expect = 2.500e-32
Identity = 65/125 (52.00%), Postives = 95/125 (76.00%), Query Frame = 0 
Query:   26 TPIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQN 150
            TP+ ++ A        L AVVD  S   FD+ +  AG  L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++P+A +L+KREGVRSVP+FH++KNG++VD ++GA+ E +E  I ++
Sbjct:   46 TPVVTTIAKVARTPLTLSAVVDIGSESAFDQTIASAGGSLVVVDYSTTWCGPCKVIAPKFEELSEKYGDAVFLKVIGDASPDASKLMKREGVRSVPSFHYFKNGEKVDVVNGANAEAIEAAIAKH 170
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: XP_005820852.1 (hypothetical protein GUITHDRAFT_81021 [Guillardia theta CCMP2712] >EKX33872.1 hypothetical protein GUITHDRAFT_81021 [Guillardia theta CCMP2712])

HSP 1 Score: 142.5 bits (358), Expect = 1.100e-30
Identity = 61/113 (53.98%), Postives = 89/113 (78.76%), Query Frame = 0 
Query:   44 AVVDASSPDEFDKLVTGAG-----EKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV 151
            AV+D +S  E D+ +  AG       L+I+DYSTTWCGPCK++APK+DEMS+++ DA+F+K +GD++PEA +L+KREG+RSVPAFHFWK G +++ I+GA+ E LE+ I +N+
Sbjct:    2 AVIDINSEQELDQAIEAAGWLAGENTLVIIDYSTTWCGPCKVIAPKYDEMSDKYKDAIFLKCVGDTSPEATKLMKREGIRSVPAFHFWKKGAKIEVIAGANVEALENTIKENL 114
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: GAX26894.1 (hypothetical protein FisN_9Lh190 [Fistulifera solaris])

HSP 1 Score: 141.7 bits (356), Expect = 1.800e-30
Identity = 73/140 (52.14%), Postives = 99/140 (70.71%), Query Frame = 0 
Query:    9 LLLVAAVFLSFSEAFM-ATPIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 147
            LL   A  LS S AF  A P   +R  T   A    AV+D +S   FD  +  AG  L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++PEA +L+KREGVRSVP+FH++ NG++VD ++GA+ E +E  I
Sbjct:    7 LLTTLASLLSLSAAFSPAHPFAVTR--TVKHAPLDMAVIDIASESAFDSTIKNAGSALVVVDYSTTWCGPCKVIAPKFEELSEKYPDAVFLKVIGDASPEASKLMKREGVRSVPSFHYFVNGEKVDVVNGANAEAIEAAI 144
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: GAX11099.1 (hypothetical protein FisN_9Hh190 [Fistulifera solaris])

HSP 1 Score: 140.6 bits (353), Expect = 4.000e-30
Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 0 
Query:    9 LLLVAAVFLSFSEAFMAT-PIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 147
            LL   A  LS S AF  + P   +R  T   A    AV+D +S   FD  +  AG  L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++PEA +L+KREGVRSVP+FH++ NG++VD ++GA+ E +E  I
Sbjct:    7 LLTTLASLLSLSAAFSPSHPFAVTR--TVKYAPLDMAVIDIASESAFDSTIKNAGSALVVVDYSTTWCGPCKVIAPKFEELSEKYPDAVFLKVIGDASPEASKLMKREGVRSVPSFHYFVNGEKVDVVNGANAEAIEAAI 144
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: OEU07099.1 (thioredoxin f [Fragilariopsis cylindrus CCMP1102] >OEU17061.1 thioredoxin f [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 139.4 bits (350), Expect = 9.000e-30
Identity = 69/146 (47.26%), Postives = 102/146 (69.86%), Query Frame = 0 
Query:    7 SFLLLVAAVFLSFSEAFMATPIYSSRAGTRAQA-TRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV 151
            + LL  A    S  +A   +P  +  + TR Q  T L AVVD      FDK +  A   ++IVDYSTTWCGPCK++APKFDE+S ++ D VF+KVIGD++P+A +L+KREGVRSVP+FH++K+G++VD ++GA+ E +E  + +++
Sbjct:    8 TLLLAFATALFSVEDAIAFSP--TGASVTRQQCLTPLMAVVDIDGETPFDKTIKSANGGVVIVDYSTTWCGPCKVIAPKFDELSEKYPDVVFLKVIGDASPDASKLMKREGVRSVPSFHYFKDGEKVDVVNGANAEAIEACLTKHL 151
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: CBJ29912.1 (flagellar outer arm dynein 14 kDa light chain LC5 [Ectocarpus siliculosus])

HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 0 
Query:   53 EFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 147
            E DKL +   +KL++VDYSTTWCGPCKM+ PKF++++ ++ DAVFVKVIGDST +A QL+KREGVRSVP+FHFWK+GK+V+ ++GA+ E LE  +
Sbjct:   25 ELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTL 119
[Close]
BLAST of NO05G01860 vs. NCBI_GenBank
Match: KOO25047.1 (thioredoxin f [Chrysochromulina sp. CCMP291])

HSP 1 Score: 133.7 bits (335), Expect = 4.900e-28
Identity = 69/149 (46.31%), Postives = 105/149 (70.47%), Query Frame = 0 
Query:    9 LLLVAAVFLSFSEAFMATPIYSSRAGT-----RAQAT-RLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRFDAV-FVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV 151
            LLLVA   L  ++AF        R+ +     RA+++  +  VVD SS +EF+K +  AG  L++VDYST+WCGPCK++APKFDE S ++ +V F+KV+GDS+P A +L++ +GVR++P+FHFWKN ++++SISGA  + L+D I  N+
Sbjct:    5 LLLVA--LLGCADAFRPVLAAGPRSASLLLQQRARSSPPVAVVVDISSTEEFEKALDEAGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYKSVTFLKVMGDSSPAADKLMRSQGVRALPSFHFWKNKEQIESISGAKTQALQDAIEANM 151
The following BLAST results are available for this feature:
BLAST of NO05G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852743.12.600e-6181.63thioredoxin f [Nannochloropsis gaditana CCMP526] >... [more]
EJK49673.18.700e-3350.00hypothetical protein THAOC_31425 [Thalassiosira oc... [more]
XP_002287462.11.900e-3251.41thioredoxin f [Thalassiosira pseudonana CCMP1335] ... [more]
XP_002180517.12.500e-3252.00thioredoxin f [Phaeodactylum tricornutum CCAP 1055... [more]
XP_005820852.11.100e-3053.98hypothetical protein GUITHDRAFT_81021 [Guillardia ... [more]
GAX26894.11.800e-3052.14hypothetical protein FisN_9Lh190 [Fistulifera sola... [more]
GAX11099.14.000e-3051.43hypothetical protein FisN_9Hh190 [Fistulifera sola... [more]
OEU07099.19.000e-3047.26thioredoxin f [Fragilariopsis cylindrus CCMP1102] ... [more]
CBJ29912.11.200e-2962.11flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
KOO25047.14.900e-2846.31thioredoxin f [Chrysochromulina sp. CCMP291][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003681NSK003681Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01860.1NO05G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584048gene_2977Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g111gene2363Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01860.1NO05G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01860 ID=NO05G01860|Name=NO05G01860|organism=Nannochloropsis oceanica|type=gene|length=1279bp
AGCGTAGGCCCGCCACACACGACCGTGCCTGCTCCCTGGTCGAAGCCCCT
CTTCCTTCCTTTCACATCAAGAAGAAGCAGCAGCATGGCGAAACAAAACC
TGTCTTTCCTTCTGCTGGTCGCGGCCGTCTTCCTCTCGTTCTCCGAGGCC
TTCATGGCCACACCCATTTACAGCAGCAGAGCAGGCACGAGGGCCCAAGC
CACCCGCCTGCATGCCGTGGTCGATGCATCCTCCCCTGATGAGTTTGACA
AGgtaagaagatgaccgatcctcacagcttctcgctagaatatgagtgat
gagggaaatagacaagactgagaacaagcgaccgcatggctactgtttgt
ttaagtataattgtgtcctttcctcagatgcgacgttattatcgatccag
atggaaacgtttgcgaaaagagcagtacgatatttatatagacacgtacc
attactaccatgcgcctcaaacttttcgaatctcggtggatcatgataac
gcaggcctctgggtggacttgatccctatcaagcatcagcgttttgtgac
ggtgcatgctgtcggtttatcaatttcccttacgagcgtcgtaccctttt
tctccctcactgatctttccctttccgccaaccatacctcacacgcttga
acagCTAGTCACCGGCGCTGGAGAGAAGCTCCTGATCGTCGACTACTCCA
CCACCTGGTGCGGCCCCTGCAAGATGATGGCCCCCAAATTCGACGAAATG
TCCAACCGGTTCGATGCAGTCTTCGTCAAGGTCATCGGTGACTCGACTCC
TGAAGCGGGACAGCTGCTCAAGAGGGAGGGGGTCCGTTCCGTCCCTGCTT
TCCATTTTTGGAAGAATGGGAAGCGCGTCGATTCGATTTCCGGCGCCGAC
CCCGAGAGGTTGGAGGATGTGATCTTGCAGAACGTCTAGGCGAAGGGAAG
GGGGGAGAAGAGGGAGGATGGGAAATAGAGGGCTCCTTCTCCATTGATGT
ACATGGGGACTGCGCGATAACAGGTGTCCAGTCTGGACGGTGGTGTTACG
GGCGTGGGAGGAGATGGAAAGAGAGGACCAGAAAGAAATATGAGAGAACA
TGTGTGCAACTGGCCGAGATAGTCGTCTCTGACACTCACCTTAAACATTA
TTAAAAGAGGGGTTTGAAATAGATACAGAGCCTGCGCTTCTCTTCTCTTC
TTTTCCAGGCGGCTTTTGGTCCAGACTTGGATCATATTCATCGTAGAAAG
AAAAACGCACGCACATGTCGTCTCGGCAC
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protein sequence of NO05G01860.1

>NO05G01860.1-protein ID=NO05G01860.1-protein|Name=NO05G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MAKQNLSFLLLVAAVFLSFSEAFMATPIYSSRAGTRAQATRLHAVVDASS
PDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRFDAVFVKVI
GDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV
*
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Synonyms
Publications