NO05G01860.1, NO05G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01860.1
Unique NameNO05G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length877
Alignment locationchr5:511513..512791 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:511513..512791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G01860.1 vs.
Match: XP_005852743.1 (thioredoxin f [Nannochloropsis gaditana CCMP526]; EKU23086.1 thioredoxin f [Nannochloropsis gaditana CCMP526]; EWM28306.1 thioredoxin f [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 2.600e-61
Identity = 120/147 (81.63%), Postives = 132/147 (89.80%), Query Frame = 0 
Query:    4 QNLSFLLLVAAVFLSFSEAFMATPIYSSRAGTRAQATRLHAVVDASSPDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV 151
            + L +  L+ AV LS S+AF+A P++SSRA +R Q  R  AVV+ASSPD+FDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMS+RFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI QN+
Sbjct:    3 RTLLYFFLLGAVLLSASDAFVAPPVHSSRA-SRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
The following BLAST results are available for this feature:
BLAST of NO05G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852743.12.600e-6181.63thioredoxin f [Nannochloropsis gaditana CCMP526]; ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01860NO05G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01860.1NO05G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01860.1.cds1NO05G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01860.1.cds2NO05G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01860.1 ID=NO05G01860.1|Name=NO05G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
AGCGTAGGCCCGCCACACACGACCGTGCCTGCTCCCTGGTCGAAGCCCCT
CTTCCTTCCTTTCACATCAAGAAGAAGCAGCAGCATGGCGAAACAAAACC
TGTCTTTCCTTCTGCTGGTCGCGGCCGTCTTCCTCTCGTTCTCCGAGGCC
TTCATGGCCACACCCATTTACAGCAGCAGAGCAGGCACGAGGGCCCAAGC
CACCCGCCTGCATGCCGTGGTCGATGCATCCTCCCCTGATGAGTTTGACA
AGCTAGTCACCGGCGCTGGAGAGAAGCTCCTGATCGTCGACTACTCCACC
ACCTGGTGCGGCCCCTGCAAGATGATGGCCCCCAAATTCGACGAAATGTC
CAACCGGTTCGATGCAGTCTTCGTCAAGGTCATCGGTGACTCGACTCCTG
AAGCGGGACAGCTGCTCAAGAGGGAGGGGGTCCGTTCCGTCCCTGCTTTC
CATTTTTGGAAGAATGGGAAGCGCGTCGATTCGATTTCCGGCGCCGACCC
CGAGAGGTTGGAGGATGTGATCTTGCAGAACGTCTAGGCGAAGGGAAGGG
GGGAGAAGAGGGAGGATGGGAAATAGAGGGCTCCTTCTCCATTGATGTAC
ATGGGGACTGCGCGATAACAGGTGTCCAGTCTGGACGGTGGTGTTACGGG
CGTGGGAGGAGATGGAAAGAGAGGACCAGAAAGAAATATGAGAGAACATG
TGTGCAACTGGCCGAGATAGTCGTCTCTGACACTCACCTTAAACATTATT
AAAAGAGGGGTTTGAAATAGATACAGAGCCTGCGCTTCTCTTCTCTTCTT
TTCCAGGCGGCTTTTGGTCCAGACTTGGATCATATTCATCGTAGAAAGAA
AAACGCACGCACATGTCGTCTCGGCAC
back to top

protein sequence of NO05G01860.1

>NO05G01860.1-protein ID=NO05G01860.1-protein|Name=NO05G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MAKQNLSFLLLVAAVFLSFSEAFMATPIYSSRAGTRAQATRLHAVVDASS
PDEFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSNRFDAVFVKVI
GDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVILQNV
*
back to top

mRNA from alignment at chr5:511513..512791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01860.1 ID=NO05G01860.1|Name=NO05G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp|location=Sequence derived from alignment at chr5:511513..512791+ (Nannochloropsis oceanica)
AGCGTAGGCCCGCCACACACGACCGTGCCTGCTCCCTGGTCGAAGCCCCT
CTTCCTTCCTTTCACATCAAGAAGAAGCAGCAGCATGGCGAAACAAAACC
TGTCTTTCCTTCTGCTGGTCGCGGCCGTCTTCCTCTCGTTCTCCGAGGCC
TTCATGGCCACACCCATTTACAGCAGCAGAGCAGGCACGAGGGCCCAAGC
CACCCGCCTGCATGCCGTGGTCGATGCATCCTCCCCTGATGAGTTTGACA
AGGTAAGAAGATGACCGATCCTCACAGCTTCTCGCTAGAATATGAGTGAT
GAGGGAAATAGACAAGACTGAGAACAAGCGACCGCATGGCTACTGTTTGT
TTAAGTATAATTGTGTCCTTTCCTCAGATGCGACGTTATTATCGATCCAG
ATGGAAACGTTTGCGAAAAGAGCAGTACGATATTTATATAGACACGTACC
ATTACTACCATGCGCCTCAAACTTTTCGAATCTCGGTGGATCATGATAAC
GCAGGCCTCTGGGTGGACTTGATCCCTATCAAGCATCAGCGTTTTGTGAC
GGTGCATGCTGTCGGTTTATCAATTTCCCTTACGAGCGTCGTACCCTTTT
TCTCCCTCACTGATCTTTCCCTTTCCGCCAACCATACCTCACACGCTTGA
ACAGCTAGTCACCGGCGCTGGAGAGAAGCTCCTGATCGTCGACTACTCCA
CCACCTGGTGCGGCCCCTGCAAGATGATGGCCCCCAAATTCGACGAAATG
TCCAACCGGTTCGATGCAGTCTTCGTCAAGGTCATCGGTGACTCGACTCC
TGAAGCGGGACAGCTGCTCAAGAGGGAGGGGGTCCGTTCCGTCCCTGCTT
TCCATTTTTGGAAGAATGGGAAGCGCGTCGATTCGATTTCCGGCGCCGAC
CCCGAGAGGTTGGAGGATGTGATCTTGCAGAACGTCTAGGCGAAGGGAAG
GGGGGAGAAGAGGGAGGATGGGAAATAGAGGGCTCCTTCTCCATTGATGT
ACATGGGGACTGCGCGATAACAGGTGTCCAGTCTGGACGGTGGTGTTACG
GGCGTGGGAGGAGATGGAAAGAGAGGACCAGAAAGAAATATGAGAGAACA
TGTGTGCAACTGGCCGAGATAGTCGTCTCTGACACTCACCTTAAACATTA
TTAAAAGAGGGGTTTGAAATAGATACAGAGCCTGCGCTTCTCTTCTCTTC
TTTTCCAGGCGGCTTTTGGTCCAGACTTGGATCATATTCATCGTAGAAAG
AAAAACGCACGCACATGTCGTCTCGGCAC
back to top

Coding sequence (CDS) from alignment at chr5:511513..512791+

>NO05G01860.1 ID=NO05G01860.1|Name=NO05G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr5:511513..512791+ (Nannochloropsis oceanica)
ATGGCGAAACAAAACCTGTCTTTCCTTCTGCTGGTCGCGGCCGTCTTCCT
CTCGTTCTCCGAGGCCTTCATGGCCACACCCATTTACAGCAGCAGAGCAG
GCACGAGGGCCCAAGCCACCCGCCTGCATGCCGTGGTCGATGCATCCTCC
CCTGATGAGTTTGACAAGCTAGTCACCGGCGCTGGAGAGAAGCTCCTGAT
CGTCGACTACTCCACCACCTGGTGCGGCCCCTGCAAGATGATGGCCCCCA
AATTCGACGAAATGTCCAACCGGTTCGATGCAGTCTTCGTCAAGGTCATC
GGTGACTCGACTCCTGAAGCGGGACAGCTGCTCAAGAGGGAGGGGGTCCG
TTCCGTCCCTGCTTTCCATTTTTGGAAGAATGGGAAGCGCGTCGATTCGA
TTTCCGGCGCCGACCCCGAGAGGTTGGAGGATGTGATCTTGCAGAACGTC
TAG
back to top
Synonyms
Publications