NO05G01810, NO05G01810 (gene) Nannochloropsis oceanica

Overview
NameNO05G01810
Unique NameNO05G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1136
Alignment locationchr5:495991..497126 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:495991..497126 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003687NSK003687Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01810.1NO05G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584029gene_2971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01810.1NO05G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01810 ID=NO05G01810|Name=NO05G01810|organism=Nannochloropsis oceanica|type=gene|length=1136bp
ACGTGATTGTTGCCCACGTTCGCTTGGCACTTTCAAGGACAATGCCATCC
ACCCACTCTGTCAAGAATCAGACAATGAAGGCCTCTCGTGGACCCTCAGT
TAGCTTGAGAGGATTTAGTTTACGTGTATTTCCAAAGTTTAGCCGCGCCT
AAATCATGGAGCAAGCGGAGCTCATTCTACATTGCGTTGGGGCCCTTTAA
ACTTCTGTGCTTACCAAGTAGTGGCCACATCTCTGGAATGGGGCTACGAA
AGCTAAAGCAGAGAGAGCAACAAATACGAGCGAGGCGTTTCTAGTCCTCG
AGACATCCAAAGTAATGAAAATTAAAAGTGACTACAACGGCCTCGGCGTC
GCTCTTACTCGCGACGGAGCGGATACACAATTTTTGCACGCCAAAACTTT
GTGTTTTGGGTCGACGAGAACCATTATTTACCCGTTCTCTATCACACCAT
CCTTTAGGACAGTTGTTACGCTTTGGCCTGCATCATTTCCCCTTCCTGGC
CTCCTGGTTTCTTCTCTTCCCATTTCCTACGCCTGCTGACTTCGTCGCTT
ATGGCCACCTTCCTCGCCTTCACCATTGGGGCGGGCGCGGCATCCGCCTG
CCTCTACGAAGCCAGCCTGGCCCTCGACCAGTATGCCACAGCTTCGAATC
CTCGGCGGTATTGTGACAAGGGCATCGAGCCCATCCGTGGCCCCTCCAGC
ATCAACCTCAGCgtacgtgagggcatgcagtaggaggggtagaggtggta
ttagatgcgggctcgagagccaggattgtacgcgtgacgcgcagccacac
agtatcttctggcggtttcccaagatggggcttgtaatttcccatcatac
cgctgtatggatcgtgctccgatgacttctcccatgaccatccctagcct
tctcattcttttcattcattccttccgccaacccctccatcagACATACA
CAGACTACGTGTGGAGCAAGGGTGAACATCCCAAATTCACCGACATGAGG
AGTCACTGGAACAATGCTGTTTGGTCGGTACGAGAGAAGATAGTCAAATA
CGTAGAAGATATCAAGAAATGAGAAGTGAGAAAGGCGCAGAAGAAATAAA
CTCAAAAAATAGTGTTTCCTTTGGAAAGGGTGGTCG
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protein sequence of NO05G01810.1

>NO05G01810.1-protein ID=NO05G01810.1-protein|Name=NO05G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MATFLAFTIGAGAASACLYEASLALDQYATASNPRRYCDKGIEPIRGPSS
INLSTYTDYVWSKGEHPKFTDMRSHWNNAVWSVREKIVKYVEDIKK*
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Synonyms
Publications