NO05G01810.1, NO05G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01810.1
Unique NameNO05G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length905
Alignment locationchr5:495991..497126 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:495991..497126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01810NO05G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01810.1NO05G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01810.1.cds1NO05G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01810.1.cds2NO05G01810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01810.1 ID=NO05G01810.1|Name=NO05G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=905bp
ACGTGATTGTTGCCCACGTTCGCTTGGCACTTTCAAGGACAATGCCATCC
ACCCACTCTGTCAAGAATCAGACAATGAAGGCCTCTCGTGGACCCTCAGT
TAGCTTGAGAGGATTTAGTTTACGTGTATTTCCAAAGTTTAGCCGCGCCT
AAATCATGGAGCAAGCGGAGCTCATTCTACATTGCGTTGGGGCCCTTTAA
ACTTCTGTGCTTACCAAGTAGTGGCCACATCTCTGGAATGGGGCTACGAA
AGCTAAAGCAGAGAGAGCAACAAATACGAGCGAGGCGTTTCTAGTCCTCG
AGACATCCAAAGTAATGAAAATTAAAAGTGACTACAACGGCCTCGGCGTC
GCTCTTACTCGCGACGGAGCGGATACACAATTTTTGCACGCCAAAACTTT
GTGTTTTGGGTCGACGAGAACCATTATTTACCCGTTCTCTATCACACCAT
CCTTTAGGACAGTTGTTACGCTTTGGCCTGCATCATTTCCCCTTCCTGGC
CTCCTGGTTTCTTCTCTTCCCATTTCCTACGCCTGCTGACTTCGTCGCTT
ATGGCCACCTTCCTCGCCTTCACCATTGGGGCGGGCGCGGCATCCGCCTG
CCTCTACGAAGCCAGCCTGGCCCTCGACCAGTATGCCACAGCTTCGAATC
CTCGGCGGTATTGTGACAAGGGCATCGAGCCCATCCGTGGCCCCTCCAGC
ATCAACCTCAGCACATACACAGACTACGTGTGGAGCAAGGGTGAACATCC
CAAATTCACCGACATGAGGAGTCACTGGAACAATGCTGTTTGGTCGGTAC
GAGAGAAGATAGTCAAATACGTAGAAGATATCAAGAAATGAGAAGTGAGA
AAGGCGCAGAAGAAATAAACTCAAAAAATAGTGTTTCCTTTGGAAAGGGT
GGTCG
back to top

protein sequence of NO05G01810.1

>NO05G01810.1-protein ID=NO05G01810.1-protein|Name=NO05G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MATFLAFTIGAGAASACLYEASLALDQYATASNPRRYCDKGIEPIRGPSS
INLSTYTDYVWSKGEHPKFTDMRSHWNNAVWSVREKIVKYVEDIKK*
back to top

mRNA from alignment at chr5:495991..497126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01810.1 ID=NO05G01810.1|Name=NO05G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1136bp|location=Sequence derived from alignment at chr5:495991..497126- (Nannochloropsis oceanica)
ACGTGATTGTTGCCCACGTTCGCTTGGCACTTTCAAGGACAATGCCATCC
ACCCACTCTGTCAAGAATCAGACAATGAAGGCCTCTCGTGGACCCTCAGT
TAGCTTGAGAGGATTTAGTTTACGTGTATTTCCAAAGTTTAGCCGCGCCT
AAATCATGGAGCAAGCGGAGCTCATTCTACATTGCGTTGGGGCCCTTTAA
ACTTCTGTGCTTACCAAGTAGTGGCCACATCTCTGGAATGGGGCTACGAA
AGCTAAAGCAGAGAGAGCAACAAATACGAGCGAGGCGTTTCTAGTCCTCG
AGACATCCAAAGTAATGAAAATTAAAAGTGACTACAACGGCCTCGGCGTC
GCTCTTACTCGCGACGGAGCGGATACACAATTTTTGCACGCCAAAACTTT
GTGTTTTGGGTCGACGAGAACCATTATTTACCCGTTCTCTATCACACCAT
CCTTTAGGACAGTTGTTACGCTTTGGCCTGCATCATTTCCCCTTCCTGGC
CTCCTGGTTTCTTCTCTTCCCATTTCCTACGCCTGCTGACTTCGTCGCTT
ATGGCCACCTTCCTCGCCTTCACCATTGGGGCGGGCGCGGCATCCGCCTG
CCTCTACGAAGCCAGCCTGGCCCTCGACCAGTATGCCACAGCTTCGAATC
CTCGGCGGTATTGTGACAAGGGCATCGAGCCCATCCGTGGCCCCTCCAGC
ATCAACCTCAGCGTACGTGAGGGCATGCAGTAGGAGGGGTAGAGGTGGTA
TTAGATGCGGGCTCGAGAGCCAGGATTGTACGCGTGACGCGCAGCCACAC
AGTATCTTCTGGCGGTTTCCCAAGATGGGGCTTGTAATTTCCCATCATAC
CGCTGTATGGATCGTGCTCCGATGACTTCTCCCATGACCATCCCTAGCCT
TCTCATTCTTTTCATTCATTCCTTCCGCCAACCCCTCCATCAGACATACA
CAGACTACGTGTGGAGCAAGGGTGAACATCCCAAATTCACCGACATGAGG
AGTCACTGGAACAATGCTGTTTGGTCGGTACGAGAGAAGATAGTCAAATA
CGTAGAAGATATCAAGAAATGAGAAGTGAGAAAGGCGCAGAAGAAATAAA
CTCAAAAAATAGTGTTTCCTTTGGAAAGGGTGGTCG
back to top

Coding sequence (CDS) from alignment at chr5:495991..497126-

>NO05G01810.1 ID=NO05G01810.1|Name=NO05G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at chr5:495991..497126- (Nannochloropsis oceanica)
ATGGCCACCTTCCTCGCCTTCACCATTGGGGCGGGCGCGGCATCCGCCTG
CCTCTACGAAGCCAGCCTGGCCCTCGACCAGTATGCCACAGCTTCGAATC
CTCGGCGGTATTGTGACAAGGGCATCGAGCCCATCCGTGGCCCCTCCAGC
ATCAACCTCAGCACATACACAGACTACGTGTGGAGCAAGGGTGAACATCC
CAAATTCACCGACATGAGGAGTCACTGGAACAATGCTGTTTGGTCGGTAC
GAGAGAAGATAGTCAAATACGTAGAAGATATCAAGAAATGA
back to top
Synonyms
Publications