NO05G01780, NO05G01780 (gene) Nannochloropsis oceanica

Overview
NameNO05G01780
Unique NameNO05G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2685
Alignment locationchr5:487750..490434 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:487750..490434 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G01780 vs. NCBI_GenBank
Match: EWM28238.1 (hypothetical protein Naga_100004g103 [Nannochloropsis gaditana])

HSP 1 Score: 696.8 bits (1797), Expect = 6.600e-197
Identity = 389/685 (56.79%), Postives = 451/685 (65.84%), Query Frame = 0 
Query:    1 MWRLGTTSFGRMRVCLYQYHRHRGVGMSSISPGATLRFAPQTEASNAVTTK---RPPGVNIYGGTLAQRENVARRLAQLPEWHAKLEYESLAICLLTDGLFHESVTTEASTYNEQSVGRASSSSTASSEA--LAEAFLKSDLQGTIMTIFHVASNEKKQLQKAHGMEVLRSWAKDTLRQHLASMGSVGATGLILEPVLMDLTEHNSDEAHEDDAMLAKALTQKVSLKTTALPGTLIPAKHCSKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLICLQTYYLALDCAYSADVAVRDAEAKRYQTVVAALPKGSLILGEEAALDVLVGWTEQARLHETLLRPLPR----EKEDEIIQHAPVSLDVDISTFYMSLINFFYGPPTDVLAGNHRLENLGPQDLILVTDDGHHPYDEGGYSGGATRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPGQAPQVVCGDLEKQDLSLYSLVLIHSGNHPIEPNIYKKRLDLCKNAGVAVTTPSQLKTWLRRPSTLATVLKVWPRSFKARVLGVGEEEGEEXXRAKTDVALAVAKGRPNGGGSCAGDGSVIDAGEGSARVRKVRLAALSNSSGAVADMAKPAAGPWEHGFRKTVGNICGECDSWSCGQCTRKQQEYGERLGKSHQHGLGLEWRDLY 677
            MWR G T       C       R  G  SI P       P    +N VT++   + P V I+GGT AQR+NVA RL ++PEWH KL++E++ ICLLTD LFHESV TEAST NEQS+   SS+S++SS +  LAEAFLKSDL GTI+TIFHV + EK+ L K HG +V+RSWAKDTLRQHLASMGSVGATGLILEP+LMDL   NSDE +EDDA+LA+AL +K SLKT+ L GTLIP +H  KLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLI LQTYYLALD AYS+DV VRD EA R++ VVAALP+GSL+LGEEAALDVL+ WT QAR  E LL P P        D    H P +LDVD+STFY++L+NFFYGPP+DVLAG+HRLENLGPQD ILVTDDGHHPYD   + G                                                          FG  Q+P+VVCGDL+KQDLS YSLV+IHSGNHPIEP+ Y++RLD+CKNAGVAV+TPSQLKTWL RP++LA VLKVWPRSFKARVLG    EGE       D      K   N  G    D   +      ++ R +  A    S             PW HGF K   N C EC SWSCG+CT+K+Q+Y  RLGK HQHGLGLEWRDLY
Sbjct:    1 MWRYGRTLIWNSHAC------KRFRGTLSIPPSKPSLKVP----ANPVTSQDHVKWPAVKIFGGTQAQRQNVATRLLRIPEWHTKLKHEAITICLLTDDLFHESVATEASTINEQSIDLPSSTSSSSSPSGPLAEAFLKSDLIGTILTIFHVDAQEKRHLIKVHGTDVVRSWAKDTLRQHLASMGSVGATGLILEPILMDLASQNSDETYEDDALLAQALVKKNSLKTSVLLGTLIPERHAGKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLITLQTYYLALDRAYSSDVEVRDREALRFKRVVAALPRGSLVLGEEAALDVLMEWTLQARCREGLLSPQPNAHACPTSDGSPTHPP-ALDVDMSTFYLALVNFFYGPPSDVLAGSHRLENLGPQDTILVTDDGHHPYDXXXHGGS---------RDCYGLKSAGIGKGGTFGAAGVGAVPSIQAVVRGQNVAKMLRKRLEEKFGSDQSPKVVCGDLQKQDLSAYSLVIIHSGNHPIEPSTYRRRLDMCKNAGVAVSTPSQLKTWLHRPASLAAVLKVWPRSFKARVLG----EGENPEDVHGDRLRECDKQEENLAGGKQKDHITL-----KSQKRMIGTATHDES-------------PWGHGFAKLGDNTCSECGSWSCGECTKKRQQYAARLGKQHQHGLGLEWRDLY 643
The following BLAST results are available for this feature:
BLAST of NO05G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28238.16.600e-19756.79hypothetical protein Naga_100004g103 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003690NSK003690Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01780.1NO05G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584016gene_2968Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g103gene2356Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01780.1NO05G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01780 ID=NO05G01780|Name=NO05G01780|organism=Nannochloropsis oceanica|type=gene|length=2685bp
GTCTTGTGTTCTGCTCTTTCCTCCTGTGCTTTGTACAGAAATCAGGCTGC
TGCTCCTATGAGTCGGATGTACTTCACCCGTCAGGTGCTCGTCCATCCCC
TTCAGCGCAATACAATAGATATTTGATTACCTTGTTGTATCAATTGTCTC
GCTTCTCTCTGTCCACACCCCACAGTCGACAAACGTCCCACAGACGCCAT
GTGGCGTCTTGGGACGACCTCATTTGGGCGCATGCGCGTCTGCCTCTACC
AGTACCACCGTCACCGGGGGGTCGGCATGTCGTCCATATCCCCTGGAGCA
ACACTCCGCTTTGCTCCGCAAACCGAGGCCAGCAACGCTGTAACCACTAA
ACGGCCACCGGGGGTGAATATTTATGGTGGTACCCTGGCGCAGCGTGAAA
ATGTAGCCCGTCGGCTCGCCCAGCTCCCTGAGTGGCATGCCAAGCTCGAG
TACGAATCCCTTGCCATTTGTCTCTTGACAGATGGCCTCTTCCACGAGTC
GGTGACCACGGAAGCTTCCACATACAACGAGCAGAGCGTCGGGCGTGCTT
CGTCCTCCTCTACGGCATCTTCGGAAGCCCTTGCTGAAGCCTTTCTTAAG
AGTGATTTGCAGGGCACTATCATGACCATTTTTCATGTGGCTTCCAATGA
AAAGAAACAGCTTCAGAAAGCGCACGGAATGGAGGTGCTTCGTTCCTGGG
CAAAGGACACGCTTCGCCAGCATTTGGCTTCGATGGGAAGCGTGGGAGCG
ACGGGACTGATTTTAGAGCCTGTGCTGATGGACCTGACGGAGCACAATTC
GGATGAGGCACACGAGGATGATGCGATGCTGGCCAAAGCGTTGACTCAGA
AAGTGTCACTCAAGACCACGGCCCTTCCTGGTACCTTAATCCCGGCCAAG
CACTGTAGCAAGCTGGTCTTACTCGTGTTTCCAAGGCGGGAGACGCGCCC
TTCAGAGGGTTTGCACCGAGgtacgttcattcccttgtcccctttctcct
ccttcccgtctccctcgaagtcttgtactagctttctcccccaaaatgcc
catcatcgtttcattgaactattctcttgctcatctccattctccatccc
tttcgctctgcctttagTCGAACGGCTTCTCCTTGATTACTGCCGAAAGA
ACCTTATTTGCTTGCAGACGTACTATCTAGCCTTGGACTGTGCCTATTCG
GCTGACGTGGCTGTGAGGGATGCTGAGGCTAAGCGGTATCAAACGGTGGT
GGCAGCGTTGCCTAAAGGCTCGCTGATCCTTGGGGAGGAGGCAGCCCTAG
ACGTATTGGTTGGCTGGACGGAGCAGGCCCGACTCCACGAAACTCTTCTC
CGTCCCCTGCCTCGGGAGAAGGAAGATGAGATTATCCAACATGCACCGGT
GTCGTTGGATGTGGATATCTCGACGTTTTACATGTCTTTGATTAATTTCT
TTTATGGGCCACCCACTGACGTTTTGGCGGGAAATCATCGTTTGGAGAAC
CTCGGGCCGCAAGACCTTATCTTGGTGACGGATGACGGACATCACCCTTA
CGACGAGGGAGGCTACAGCGGTGGTGCTACCAGAGGAATGATCGAGCGTA
CCAGGAGCAGCAGCAGTAGCAGTGGGAGAGGGAGTACCGGCGGCAGTGCC
GGGGGAAAGGCGGCGATAAGTGGGGGTCCGTCCATAATGGCGGCATTGCG
AGGGGAGAGACTGGCAGAAAGACTCCGTCCGCGGTTGGAAAAACGGTTCG
GTCCAGGACAGGCCCCACAGGTTGTGTGTGGAGATCTTGAGAAGCAAGAT
TTGTCTCTTTATAGCTTAGTGCTGATTCATTCAGGCAACCATCCCATTGA
GCCGAACATATACAAGAAACGGCTAGATTTGTGTAAGAACGCGGGAGTTG
CTGTCACCACACCATCTCAGCTCAAGACATGGTTGCGCCGGCCATCCACA
TTGGCAACGGTCCTGAAGGTCTGGCCTCGGTCGTTCAAGGCGCGAGTGTT
GGGGGTTGGGGAGGAGGAAGGAGAAGAGGAGGAGAGGGCAAAGACCGATG
TGGCCCTGGCGGTGGCTAAGGGAAGGCCTAACGGTGGAGGGAGTTGCGCA
GGCGACGGCAGTGTGATTGATGCTGGGGAGGGGTCAGCAAGGGTGAGAAA
GGTGAGACTGGCTGCGTTGAGCAATTCGAGTGGTGCAGTTGCGGATATGG
CCAAGCCGGCAGCGGGCCCGTGGGAACACGGATTCCGGAAGACGGTCGGC
AATATATGTGGGGAGTGTGACTCGTGGAGCTGCGGGCAGTGCACACGAAA
ACAGCAGGAGTATGGTGAGCGCCTCGGCAAATCTCATCAGCACGGGCTTG
GTCTGGAGTGGCGTGATTTGTATTGATCTTTCCCCCACAATAAAAGGTTT
CCTTGTAGATGTGAGGAATCTTAGGAACACTGTGAATAATTGTTATTTAC
AATTACTGCTACGGCGGCGATACAGCAGCCGCAAAGCAGCACAGGAGCTT
TTGACTTACGAAAAGAAGTCATGCGATAGTTGAAAACGAGATATATATAT
TTCAGACGTAGCACAGCGTGCATGTACGTATTCAAGAATGACATGGATAC
GAGAGGCCACAGATGGACAAGTAATCAAAATCAAGCAATGAGACAGGAGA
TGTAAAAAGCACGAACAGCTGTACAAACTCAGAAT
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protein sequence of NO05G01780.1

>NO05G01780.1-protein ID=NO05G01780.1-protein|Name=NO05G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MWRLGTTSFGRMRVCLYQYHRHRGVGMSSISPGATLRFAPQTEASNAVTT
KRPPGVNIYGGTLAQRENVARRLAQLPEWHAKLEYESLAICLLTDGLFHE
SVTTEASTYNEQSVGRASSSSTASSEALAEAFLKSDLQGTIMTIFHVASN
EKKQLQKAHGMEVLRSWAKDTLRQHLASMGSVGATGLILEPVLMDLTEHN
SDEAHEDDAMLAKALTQKVSLKTTALPGTLIPAKHCSKLVLLVFPRRETR
PSEGLHRVERLLLDYCRKNLICLQTYYLALDCAYSADVAVRDAEAKRYQT
VVAALPKGSLILGEEAALDVLVGWTEQARLHETLLRPLPREKEDEIIQHA
PVSLDVDISTFYMSLINFFYGPPTDVLAGNHRLENLGPQDLILVTDDGHH
PYDEGGYSGGATRGMIERTRSSSSSSGRGSTGGSAGGKAAISGGPSIMAA
LRGERLAERLRPRLEKRFGPGQAPQVVCGDLEKQDLSLYSLVLIHSGNHP
IEPNIYKKRLDLCKNAGVAVTTPSQLKTWLRRPSTLATVLKVWPRSFKAR
VLGVGEEEGEEEERAKTDVALAVAKGRPNGGGSCAGDGSVIDAGEGSARV
RKVRLAALSNSSGAVADMAKPAAGPWEHGFRKTVGNICGECDSWSCGQCT
RKQQEYGERLGKSHQHGLGLEWRDLY*
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Synonyms
Publications