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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:487750..490434 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01780.1 vs.
Match: EWM28238.1 (hypothetical protein Naga_100004g103 [Nannochloropsis gaditana]) HSP 1 Score: 743.4 bits (1918), Expect = 6.100e-211 Identity = 411/685 (60.00%), Postives = 486/685 (70.95%), Query Frame = 0
Query: 1 MWRLGTTSFGRMRVCLYQYHRHRGVGMSSISPGATLRFAPQTEASNAVTTK---RPPGVNIYGGTLAQRENVARRLAQLPEWHAKLEYESLAICLLTDGLFHESVTTEASTYNEQSVGRASSSSTASSEA--LAEAFLKSDLQGTIMTIFHVASNEKKQLQKAHGMEVLRSWAKDTLRQHLASMGSVGATGLILEPVLMDLTEHNSDEAHEDDAMLAKALTQKVSLKTTALPGTLIPAKHCSKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLICLQTYYLALDCAYSADVAVRDAEAKRYQTVVAALPKGSLILGEEAALDVLVGWTEQARLHETLLRPLPREK----EDEIIQHAPVSLDVDISTFYMSLINFFYGPPTDVLAGNHRLENLGPQDLILVTDDGHHPYDEGGYSGGATRGMIERTRSSSSSSGRGSTGGSAGGKAAISGGPSIMAALRGERLAERLRPRLEKRFGPGQAPQVVCGDLEKQDLSLYSLVLIHSGNHPIEPNIYKKRLDLCKNAGVAVTTPSQLKTWLRRPSTLATVLKVWPRSFKARVLGVGEEEGEEEERAKTDVALAVAKGRPNGGGSCAGDGSVIDAGEGSARVRKVRLAALSNSSGAVADMAKPAAGPWEHGFRKTVGNICGECDSWSCGQCTRKQQEYGERLGKSHQHGLGLEWRDLY 677
MWR G T C R RG SI P P +N VT++ + P V I+GGT AQR+NVA RL ++PEWH KL++E++ ICLLTD LFHESV TEAST NEQS+ SS+S++SS + LAEAFLKSDL GTI+TIFHV + EK+ L K HG +V+RSWAKDTLRQHLASMGSVGATGLILEP+LMDL NSDE +EDDA+LA+AL +K SLKT+ L GTLIP +H KLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLI LQTYYLALD AYS+DV VRD EA R++ VVAALP+GSL+LGEEAALDVL+ WT QAR E LL P P D H P +LDVD+STFY++L+NFFYGPP+DVLAG+HRLENLGPQD ILVTDDGHHPYD+G + G ++ S+ G+G T G+AG + PSI A +RG+ +A+ LR RLE++FG Q+P+VVCGDL+KQDLS YSLV+IHSGNHPIEP+ Y++RLD+CKNAGVAV+TPSQLKTWL RP++LA VLKVWPRSFKARVLG EGE E D K N G D + ++ R + A S PW HGF K N C EC SWSCG+CT+K+Q+Y RLGK HQHGLGLEWRDLY
Sbjct: 1 MWRYGRTLIWNSHAC----KRFRGT--LSIPPSKPSLKVP----ANPVTSQDHVKWPAVKIFGGTQAQRQNVATRLLRIPEWHTKLKHEAITICLLTDDLFHESVATEASTINEQSIDLPSSTSSSSSPSGPLAEAFLKSDLIGTILTIFHVDAQEKRHLIKVHGTDVVRSWAKDTLRQHLASMGSVGATGLILEPILMDLASQNSDETYEDDALLAQALVKKNSLKTSVLLGTLIPERHAGKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLITLQTYYLALDRAYSSDVEVRDREALRFKRVVAALPRGSLVLGEEAALDVLMEWTLQARCREGLLSPQPNAHACPTSDGSPTHPP-ALDVDMSTFYLALVNFFYGPPSDVLAGSHRLENLGPQDTILVTDDGHHPYDDGHHGGSRDCYGLK-----SAGIGKGGTFGAAG----VGAVPSIQAVVRGQNVAKMLRKRLEEKFGSDQSPKVVCGDLQKQDLSAYSLVIIHSGNHPIEPSTYRRRLDMCKNAGVAVSTPSQLKTWLHRPASLAAVLKVWPRSFKARVLG----EGENPEDVHGDRLRECDKQEENLAGGKQKDHITL-----KSQKRMIGTATHDES-------------PWGHGFAKLGDNTCSECGSWSCGECTKKRQQYAARLGKQHQHGLGLEWRDLY 643
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01780.1 ID=NO05G01780.1|Name=NO05G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2538bp
GTCTTGTGTTCTGCTCTTTCCTCCTGTGCTTTGTACAGAAATCAGGCTGC
TGCTCCTATGAGTCGGATGTACTTCACCCGTCAGGTGCTCGTCCATCCCC
TTCAGCGCAATACAATAGATATTTGATTACCTTGTTGTATCAATTGTCTC
GCTTCTCTCTGTCCACACCCCACAGTCGACAAACGTCCCACAGACGCCAT
GTGGCGTCTTGGGACGACCTCATTTGGGCGCATGCGCGTCTGCCTCTACC
AGTACCACCGTCACCGGGGGGTCGGCATGTCGTCCATATCCCCTGGAGCA
ACACTCCGCTTTGCTCCGCAAACCGAGGCCAGCAACGCTGTAACCACTAA
ACGGCCACCGGGGGTGAATATTTATGGTGGTACCCTGGCGCAGCGTGAAA
ATGTAGCCCGTCGGCTCGCCCAGCTCCCTGAGTGGCATGCCAAGCTCGAG
TACGAATCCCTTGCCATTTGTCTCTTGACAGATGGCCTCTTCCACGAGTC
GGTGACCACGGAAGCTTCCACATACAACGAGCAGAGCGTCGGGCGTGCTT
CGTCCTCCTCTACGGCATCTTCGGAAGCCCTTGCTGAAGCCTTTCTTAAG
AGTGATTTGCAGGGCACTATCATGACCATTTTTCATGTGGCTTCCAATGA
AAAGAAACAGCTTCAGAAAGCGCACGGAATGGAGGTGCTTCGTTCCTGGG
CAAAGGACACGCTTCGCCAGCATTTGGCTTCGATGGGAAGCGTGGGAGCG
ACGGGACTGATTTTAGAGCCTGTGCTGATGGACCTGACGGAGCACAATTC
GGATGAGGCACACGAGGATGATGCGATGCTGGCCAAAGCGTTGACTCAGA
AAGTGTCACTCAAGACCACGGCCCTTCCTGGTACCTTAATCCCGGCCAAG
CACTGTAGCAAGCTGGTCTTACTCGTGTTTCCAAGGCGGGAGACGCGCCC
TTCAGAGGGTTTGCACCGAGTCGAACGGCTTCTCCTTGATTACTGCCGAA
AGAACCTTATTTGCTTGCAGACGTACTATCTAGCCTTGGACTGTGCCTAT
TCGGCTGACGTGGCTGTGAGGGATGCTGAGGCTAAGCGGTATCAAACGGT
GGTGGCAGCGTTGCCTAAAGGCTCGCTGATCCTTGGGGAGGAGGCAGCCC
TAGACGTATTGGTTGGCTGGACGGAGCAGGCCCGACTCCACGAAACTCTT
CTCCGTCCCCTGCCTCGGGAGAAGGAAGATGAGATTATCCAACATGCACC
GGTGTCGTTGGATGTGGATATCTCGACGTTTTACATGTCTTTGATTAATT
TCTTTTATGGGCCACCCACTGACGTTTTGGCGGGAAATCATCGTTTGGAG
AACCTCGGGCCGCAAGACCTTATCTTGGTGACGGATGACGGACATCACCC
TTACGACGAGGGAGGCTACAGCGGTGGTGCTACCAGAGGAATGATCGAGC
GTACCAGGAGCAGCAGCAGTAGCAGTGGGAGAGGGAGTACCGGCGGCAGT
GCCGGGGGAAAGGCGGCGATAAGTGGGGGTCCGTCCATAATGGCGGCATT
GCGAGGGGAGAGACTGGCAGAAAGACTCCGTCCGCGGTTGGAAAAACGGT
TCGGTCCAGGACAGGCCCCACAGGTTGTGTGTGGAGATCTTGAGAAGCAA
GATTTGTCTCTTTATAGCTTAGTGCTGATTCATTCAGGCAACCATCCCAT
TGAGCCGAACATATACAAGAAACGGCTAGATTTGTGTAAGAACGCGGGAG
TTGCTGTCACCACACCATCTCAGCTCAAGACATGGTTGCGCCGGCCATCC
ACATTGGCAACGGTCCTGAAGGTCTGGCCTCGGTCGTTCAAGGCGCGAGT
GTTGGGGGTTGGGGAGGAGGAAGGAGAAGAGGAGGAGAGGGCAAAGACCG
ATGTGGCCCTGGCGGTGGCTAAGGGAAGGCCTAACGGTGGAGGGAGTTGC
GCAGGCGACGGCAGTGTGATTGATGCTGGGGAGGGGTCAGCAAGGGTGAG
AAAGGTGAGACTGGCTGCGTTGAGCAATTCGAGTGGTGCAGTTGCGGATA
TGGCCAAGCCGGCAGCGGGCCCGTGGGAACACGGATTCCGGAAGACGGTC
GGCAATATATGTGGGGAGTGTGACTCGTGGAGCTGCGGGCAGTGCACACG
AAAACAGCAGGAGTATGGTGAGCGCCTCGGCAAATCTCATCAGCACGGGC
TTGGTCTGGAGTGGCGTGATTTGTATTGATCTTTCCCCCACAATAAAAGG
TTTCCTTGTAGATGTGAGGAATCTTAGGAACACTGTGAATAATTGTTATT
TACAATTACTGCTACGGCGGCGATACAGCAGCCGCAAAGCAGCACAGGAG
CTTTTGACTTACGAAAAGAAGTCATGCGATAGTTGAAAACGAGATATATA
TATTTCAGACGTAGCACAGCGTGCATGTACGTATTCAAGAATGACATGGA
TACGAGAGGCCACAGATGGACAAGTAATCAAAATCAAGCAATGAGACAGG
AGATGTAAAAAGCACGAACAGCTGTACAAACTCAGAAT back to topprotein sequence of NO05G01780.1 >NO05G01780.1-protein ID=NO05G01780.1-protein|Name=NO05G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MWRLGTTSFGRMRVCLYQYHRHRGVGMSSISPGATLRFAPQTEASNAVTT
KRPPGVNIYGGTLAQRENVARRLAQLPEWHAKLEYESLAICLLTDGLFHE
SVTTEASTYNEQSVGRASSSSTASSEALAEAFLKSDLQGTIMTIFHVASN
EKKQLQKAHGMEVLRSWAKDTLRQHLASMGSVGATGLILEPVLMDLTEHN
SDEAHEDDAMLAKALTQKVSLKTTALPGTLIPAKHCSKLVLLVFPRRETR
PSEGLHRVERLLLDYCRKNLICLQTYYLALDCAYSADVAVRDAEAKRYQT
VVAALPKGSLILGEEAALDVLVGWTEQARLHETLLRPLPREKEDEIIQHA
PVSLDVDISTFYMSLINFFYGPPTDVLAGNHRLENLGPQDLILVTDDGHH
PYDEGGYSGGATRGMIERTRSSSSSSGRGSTGGSAGGKAAISGGPSIMAA
LRGERLAERLRPRLEKRFGPGQAPQVVCGDLEKQDLSLYSLVLIHSGNHP
IEPNIYKKRLDLCKNAGVAVTTPSQLKTWLRRPSTLATVLKVWPRSFKAR
VLGVGEEEGEEEERAKTDVALAVAKGRPNGGGSCAGDGSVIDAGEGSARV
RKVRLAALSNSSGAVADMAKPAAGPWEHGFRKTVGNICGECDSWSCGQCT
RKQQEYGERLGKSHQHGLGLEWRDLY* back to topmRNA from alignment at chr5:487750..490434- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01780.1 ID=NO05G01780.1|Name=NO05G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2685bp|location=Sequence derived from alignment at chr5:487750..490434- (Nannochloropsis oceanica)
GTCTTGTGTTCTGCTCTTTCCTCCTGTGCTTTGTACAGAAATCAGGCTGC
TGCTCCTATGAGTCGGATGTACTTCACCCGTCAGGTGCTCGTCCATCCCC
TTCAGCGCAATACAATAGATATTTGATTACCTTGTTGTATCAATTGTCTC
GCTTCTCTCTGTCCACACCCCACAGTCGACAAACGTCCCACAGACGCCAT
GTGGCGTCTTGGGACGACCTCATTTGGGCGCATGCGCGTCTGCCTCTACC
AGTACCACCGTCACCGGGGGGTCGGCATGTCGTCCATATCCCCTGGAGCA
ACACTCCGCTTTGCTCCGCAAACCGAGGCCAGCAACGCTGTAACCACTAA
ACGGCCACCGGGGGTGAATATTTATGGTGGTACCCTGGCGCAGCGTGAAA
ATGTAGCCCGTCGGCTCGCCCAGCTCCCTGAGTGGCATGCCAAGCTCGAG
TACGAATCCCTTGCCATTTGTCTCTTGACAGATGGCCTCTTCCACGAGTC
GGTGACCACGGAAGCTTCCACATACAACGAGCAGAGCGTCGGGCGTGCTT
CGTCCTCCTCTACGGCATCTTCGGAAGCCCTTGCTGAAGCCTTTCTTAAG
AGTGATTTGCAGGGCACTATCATGACCATTTTTCATGTGGCTTCCAATGA
AAAGAAACAGCTTCAGAAAGCGCACGGAATGGAGGTGCTTCGTTCCTGGG
CAAAGGACACGCTTCGCCAGCATTTGGCTTCGATGGGAAGCGTGGGAGCG
ACGGGACTGATTTTAGAGCCTGTGCTGATGGACCTGACGGAGCACAATTC
GGATGAGGCACACGAGGATGATGCGATGCTGGCCAAAGCGTTGACTCAGA
AAGTGTCACTCAAGACCACGGCCCTTCCTGGTACCTTAATCCCGGCCAAG
CACTGTAGCAAGCTGGTCTTACTCGTGTTTCCAAGGCGGGAGACGCGCCC
TTCAGAGGGTTTGCACCGAGGTACGTTCATTCCCTTGTCCCCTTTCTCCT
CCTTCCCGTCTCCCTCGAAGTCTTGTACTAGCTTTCTCCCCCAAAATGCC
CATCATCGTTTCATTGAACTATTCTCTTGCTCATCTCCATTCTCCATCCC
TTTCGCTCTGCCTTTAGTCGAACGGCTTCTCCTTGATTACTGCCGAAAGA
ACCTTATTTGCTTGCAGACGTACTATCTAGCCTTGGACTGTGCCTATTCG
GCTGACGTGGCTGTGAGGGATGCTGAGGCTAAGCGGTATCAAACGGTGGT
GGCAGCGTTGCCTAAAGGCTCGCTGATCCTTGGGGAGGAGGCAGCCCTAG
ACGTATTGGTTGGCTGGACGGAGCAGGCCCGACTCCACGAAACTCTTCTC
CGTCCCCTGCCTCGGGAGAAGGAAGATGAGATTATCCAACATGCACCGGT
GTCGTTGGATGTGGATATCTCGACGTTTTACATGTCTTTGATTAATTTCT
TTTATGGGCCACCCACTGACGTTTTGGCGGGAAATCATCGTTTGGAGAAC
CTCGGGCCGCAAGACCTTATCTTGGTGACGGATGACGGACATCACCCTTA
CGACGAGGGAGGCTACAGCGGTGGTGCTACCAGAGGAATGATCGAGCGTA
CCAGGAGCAGCAGCAGTAGCAGTGGGAGAGGGAGTACCGGCGGCAGTGCC
GGGGGAAAGGCGGCGATAAGTGGGGGTCCGTCCATAATGGCGGCATTGCG
AGGGGAGAGACTGGCAGAAAGACTCCGTCCGCGGTTGGAAAAACGGTTCG
GTCCAGGACAGGCCCCACAGGTTGTGTGTGGAGATCTTGAGAAGCAAGAT
TTGTCTCTTTATAGCTTAGTGCTGATTCATTCAGGCAACCATCCCATTGA
GCCGAACATATACAAGAAACGGCTAGATTTGTGTAAGAACGCGGGAGTTG
CTGTCACCACACCATCTCAGCTCAAGACATGGTTGCGCCGGCCATCCACA
TTGGCAACGGTCCTGAAGGTCTGGCCTCGGTCGTTCAAGGCGCGAGTGTT
GGGGGTTGGGGAGGAGGAAGGAGAAGAGGAGGAGAGGGCAAAGACCGATG
TGGCCCTGGCGGTGGCTAAGGGAAGGCCTAACGGTGGAGGGAGTTGCGCA
GGCGACGGCAGTGTGATTGATGCTGGGGAGGGGTCAGCAAGGGTGAGAAA
GGTGAGACTGGCTGCGTTGAGCAATTCGAGTGGTGCAGTTGCGGATATGG
CCAAGCCGGCAGCGGGCCCGTGGGAACACGGATTCCGGAAGACGGTCGGC
AATATATGTGGGGAGTGTGACTCGTGGAGCTGCGGGCAGTGCACACGAAA
ACAGCAGGAGTATGGTGAGCGCCTCGGCAAATCTCATCAGCACGGGCTTG
GTCTGGAGTGGCGTGATTTGTATTGATCTTTCCCCCACAATAAAAGGTTT
CCTTGTAGATGTGAGGAATCTTAGGAACACTGTGAATAATTGTTATTTAC
AATTACTGCTACGGCGGCGATACAGCAGCCGCAAAGCAGCACAGGAGCTT
TTGACTTACGAAAAGAAGTCATGCGATAGTTGAAAACGAGATATATATAT
TTCAGACGTAGCACAGCGTGCATGTACGTATTCAAGAATGACATGGATAC
GAGAGGCCACAGATGGACAAGTAATCAAAATCAAGCAATGAGACAGGAGA
TGTAAAAAGCACGAACAGCTGTACAAACTCAGAAT back to topCoding sequence (CDS) from alignment at chr5:487750..490434- >NO05G01780.1 ID=NO05G01780.1|Name=NO05G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=2031bp|location=Sequence derived from alignment at chr5:487750..490434- (Nannochloropsis oceanica)
ATGTGGCGTCTTGGGACGACCTCATTTGGGCGCATGCGCGTCTGCCTCTA
CCAGTACCACCGTCACCGGGGGGTCGGCATGTCGTCCATATCCCCTGGAG
CAACACTCCGCTTTGCTCCGCAAACCGAGGCCAGCAACGCTGTAACCACT
AAACGGCCACCGGGGGTGAATATTTATGGTGGTACCCTGGCGCAGCGTGA
AAATGTAGCCCGTCGGCTCGCCCAGCTCCCTGAGTGGCATGCCAAGCTCG
AGTACGAATCCCTTGCCATTTGTCTCTTGACAGATGGCCTCTTCCACGAG
TCGGTGACCACGGAAGCTTCCACATACAACGAGCAGAGCGTCGGGCGTGC
TTCGTCCTCCTCTACGGCATCTTCGGAAGCCCTTGCTGAAGCCTTTCTTA
AGAGTGATTTGCAGGGCACTATCATGACCATTTTTCATGTGGCTTCCAAT
GAAAAGAAACAGCTTCAGAAAGCGCACGGAATGGAGGTGCTTCGTTCCTG
GGCAAAGGACACGCTTCGCCAGCATTTGGCTTCGATGGGAAGCGTGGGAG
CGACGGGACTGATTTTAGAGCCTGTGCTGATGGACCTGACGGAGCACAAT
TCGGATGAGGCACACGAGGATGATGCGATGCTGGCCAAAGCGTTGACTCA
GAAAGTGTCACTCAAGACCACGGCCCTTCCTGGTACCTTAATCCCGGCCA
AGCACTGTAGCAAGCTGGTCTTACTCGTGTTTCCAAGGCGGGAGACGCGC
CCTTCAGAGGGTTTGCACCGAGTCGAACGGCTTCTCCTTGATTACTGCCG
AAAGAACCTTATTTGCTTGCAGACGTACTATCTAGCCTTGGACTGTGCCT
ATTCGGCTGACGTGGCTGTGAGGGATGCTGAGGCTAAGCGGTATCAAACG
GTGGTGGCAGCGTTGCCTAAAGGCTCGCTGATCCTTGGGGAGGAGGCAGC
CCTAGACGTATTGGTTGGCTGGACGGAGCAGGCCCGACTCCACGAAACTC
TTCTCCGTCCCCTGCCTCGGGAGAAGGAAGATGAGATTATCCAACATGCA
CCGGTGTCGTTGGATGTGGATATCTCGACGTTTTACATGTCTTTGATTAA
TTTCTTTTATGGGCCACCCACTGACGTTTTGGCGGGAAATCATCGTTTGG
AGAACCTCGGGCCGCAAGACCTTATCTTGGTGACGGATGACGGACATCAC
CCTTACGACGAGGGAGGCTACAGCGGTGGTGCTACCAGAGGAATGATCGA
GCGTACCAGGAGCAGCAGCAGTAGCAGTGGGAGAGGGAGTACCGGCGGCA
GTGCCGGGGGAAAGGCGGCGATAAGTGGGGGTCCGTCCATAATGGCGGCA
TTGCGAGGGGAGAGACTGGCAGAAAGACTCCGTCCGCGGTTGGAAAAACG
GTTCGGTCCAGGACAGGCCCCACAGGTTGTGTGTGGAGATCTTGAGAAGC
AAGATTTGTCTCTTTATAGCTTAGTGCTGATTCATTCAGGCAACCATCCC
ATTGAGCCGAACATATACAAGAAACGGCTAGATTTGTGTAAGAACGCGGG
AGTTGCTGTCACCACACCATCTCAGCTCAAGACATGGTTGCGCCGGCCAT
CCACATTGGCAACGGTCCTGAAGGTCTGGCCTCGGTCGTTCAAGGCGCGA
GTGTTGGGGGTTGGGGAGGAGGAAGGAGAAGAGGAGGAGAGGGCAAAGAC
CGATGTGGCCCTGGCGGTGGCTAAGGGAAGGCCTAACGGTGGAGGGAGTT
GCGCAGGCGACGGCAGTGTGATTGATGCTGGGGAGGGGTCAGCAAGGGTG
AGAAAGGTGAGACTGGCTGCGTTGAGCAATTCGAGTGGTGCAGTTGCGGA
TATGGCCAAGCCGGCAGCGGGCCCGTGGGAACACGGATTCCGGAAGACGG
TCGGCAATATATGTGGGGAGTGTGACTCGTGGAGCTGCGGGCAGTGCACA
CGAAAACAGCAGGAGTATGGTGAGCGCCTCGGCAAATCTCATCAGCACGG
GCTTGGTCTGGAGTGGCGTGATTTGTATTGA back to top
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