NO05G01770, NO05G01770 (gene) Nannochloropsis oceanica

Overview
NameNO05G01770
Unique NameNO05G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3440
Alignment locationchr5:484310..487749 -

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Properties
Property NameValue
DescriptionElongation of fatty acids protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:484310..487749 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002076ELO_fam
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Homology
BLAST of NO05G01770 vs. NCBI_GenBank
Match: EWM28304.1 (fatty-acyl [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 2.800e-147
Identity = 249/304 (81.91%), Postives = 278/304 (91.45%), Query Frame = 0
Query:    1 MKWVLQEGVDFKPHGPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILG-----GQGAAGAPKGKTK 300
            MKW+L+EG+DF+P GPNSRG+ +TQ+FQV+PA+EPFYM WEK YDS+ V++WMKSVPWVPI  V++YVVGIFGGQA+MKN+KPFDLKWPLAYWNLALS+FSIMG++RVVPHL+YLTATKGL VVACGAPEPLYGNAAVGFWVQAFILSKLAELIDT FIVLRKKPLQFLHWYHHVTVLLFTWFCYT ENPGIIFVAMNYSVHAIMYGYYFLMA++VRPSWLKP +IT+MQISQMVVGVATA FYI KIR+GE CAVDQ+LL+ACGVMYSTYLYLFCEFAV+RFILG       G AG  K K +
Sbjct:   19 MKWILREGIDFQPEGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: EWM29833.1 (elongation of very long chain fatty acids protein 6 [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 6.300e-67
Identity = 131/269 (48.70%), Postives = 183/269 (68.03%), Query Frame = 0
Query:   23 YTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKK-----PFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPL-YGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGV-ATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRFI 285
            + Q+FQ +PALEPFY  WEK +D +  F  ++   WVPI+AV++Y+  +  G+  ++ +K     P +L +  A WN  L++FSI G +RVVPH ++L   K      C AP+   YG+ A G WV  F +SK+ EL+DTV +VL+ K   FLHWYHHVTVLL+TWF Y+  NPG+ F+AMNY+VHA+MY YYFLM +++ P WL P++IT+MQISQM+VGV  TA  Y Y  ++  +CAV ++L+  C  MY+TYLY F EF V+RF+
Sbjct:   27 FVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAYSY--QADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFL 293          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: XP_002293395.1 (long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335] >EED89131.1 long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 254.2 bits (648), Expect = 5.000e-64
Identity = 130/273 (47.62%), Postives = 170/273 (62.27%), Query Frame = 0
Query:   15 GPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENP-GIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAV--FYIYKIR-SGETCAVDQELLIACGVMYSTYLYLFCEFAVKRF 284
            G N  G  Y +   + P L   Y+ +E+ YD      WM+  P +PI+A V YVV I  G+A MK++  +  +  LA WNL+LS+FS +G IR  P L Y   T  L    C  P  LYG+ + G WVQ FILSK  EL+DT FIV+ KKPL FLHWYHH+TVLL+ W  Y   +P G+ FV MNYSVHA+MYGYYFLMA++ RP W  P+++T MQ+SQM +GV   +  FY Y     G+TC + +E  +A  VMY +Y YLF +F V R+
Sbjct:   14 GTNGLGVHYAEFSCLHPLLGATYLPFERFYDPVATLTWMQDRPMIPIIACVAYVVLIVLGRAYMKDRPAWSWRRILAVWNLSLSLFSWIGAIRTAPQLYYNLTTYSLRDNLCDDPAALYGSGSTGLWVQLFILSKFPELLDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPSGLFFVVMNYSVHAVMYGYYFLMAVKFRPKWFNPMFVTFMQLSQMFIGVGVTIVAFYYYSNPILGKTCHIRKENNVAAFVMYGSYFYLFAQFFVARY 286          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: GAX19603.1 (elongation of very long chain fatty acids protein 6 [Fistulifera solaris])

HSP 1 Score: 253.8 bits (647), Expect = 6.500e-64
Identity = 126/268 (47.01%), Postives = 168/268 (62.69%), Query Frame = 0
Query:   17 NSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENP-GIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRF 284
            N     Y +   + P +E  Y ++EK YD   + +WMK  P +P+ A ++Y V I+ GQA    +  ++ +  LA WNL LS+FS +G++R  PHL +           C  P   YG+ + G WVQ FILSK  ELIDT FIV+ KKPL FLHWYHH+TVLL+ W  Y   +P GIIF AMNY+VHA MYGYYFLMA++++P W  P+ IT MQISQMVVGVAT +   Y   +   CA+D+   IA  +MY +YL+LFC+F   R+
Sbjct:   10 NGDNLEYREFSCLYPQVEHLYTSFEKFYDPIPLLNWMKGQPGIPVAACIIYAVSIYYGQAYFAKRDRWNWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAECALDRGNNIAAFLMYGSYLFLFCQFFFSRY 277          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: GAX09713.1 (elongation of very long chain fatty acids protein 6 [Fistulifera solaris])

HSP 1 Score: 247.7 bits (631), Expect = 4.700e-62
Identity = 121/246 (49.19%), Postives = 161/246 (65.45%), Query Frame = 0
Query:   39 NWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENP-GIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRF 284
            ++EK YD   + +WMK  P +P+ A ++Y V I+ GQA    +  ++ ++ LA WNL LS+FS +G++R  PHL +           C  P   YG+ + G WVQ FILSK  ELIDT FIV+ KKPL FLHWYHH+TVLL+ W  Y   +P GIIF AMNY+VHA MYGYYFLMA++++P W  P+ IT MQISQMVVGVAT +   Y   +   CA+D+   IA  +MY +YL+LFC+F   R+
Sbjct:   24 SFEKFYDPIPLLNWMKGQPGIPVAACIIYAVSIYYGQAYFAKRDRWNWRYTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAECALDRGNNIAAFLMYGSYLFLFCQFFFSRY 269          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: OEU18932.1 (GNS1/SUR4 membrane protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 244.6 bits (623), Expect = 4.000e-61
Identity = 127/273 (46.52%), Postives = 172/273 (63.00%), Query Frame = 0
Query:   15 GPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVAC-GAPEPL--YGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENP-GIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRF 284
            G N  G  Y +     P LEPFY  +EK YD   + +WM+    +P+ AV++Y V I  GQ  M+N++PF+L+  +A+WNLALS+FS +G+ R +P L++      +    C  + E +  YG+ + G W   F+LSK  ELIDT FIV+ KKPL FLHWYHH+TVLL+ W  Y   +P GI F  MNYSVHA MYGYYFLMA+++RP W  PI IT+ QISQMVVGV+  +   Y  ++  TC +  E   A  VMY +YL+LF +F   R+
Sbjct:   11 GINGAGIAYREFSCEYPQLEPFYFEFEKNYDPIPLLEWMRYHSMIPVYAVILYGVLITVGQYAMRNREPFNLRRLMAFWNLALSVFSWIGMFRTLPQLLHNLYHLSMRDNLCMDSRETIASYGSGSSGLWFLLFVLSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPLGIFFSVMNYSVHASMYGYYFLMAMKMRPKWFNPIIITIFQISQMVVGVSVTLAGFYYYKTDPTCGIQNENNTAAFVMYGSYLFLFLQFFFGRY 283          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: EWM25754.1 (fatty-acyl elongase [Nannochloropsis gaditana])

HSP 1 Score: 243.0 bits (619), Expect = 1.200e-60
Identity = 124/285 (43.51%), Postives = 181/285 (63.51%), Query Frame = 0
Query:   18 SRGTMYT--QMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILGGQGAAGAPKGKTKA 301
            +R T Y+  Q +Q+ P LE FY  +EK ++   +F+++    WV  +++ +Y+        IMK +   +L  PLA WNL L+++S +G +RVVPHL++  +T       C AP  + G+ A G WV  F LSK+AELID+++I L+ +   FLHWYHHV+VL FTW  +   +PG+ F+AMNY+VH++MY YYFLMAI+ +P WL PIYIT MQI+QM+VGV  + F  Y      +CAVD  +L    V+Y++YLYLF +F +KRF +  + A    +GK  A
Sbjct:   32 ARNTTYSFIQFWQLYPWLENFYAPFEKNFNPLPIFEFVSGNWWVVYISLAIYMXXXXXLPMIMKKRPLKNLSTPLACWNLFLAVYSTIGAVRVVPHLLWFMSTHTFKQTVCTAPYYINGDGATGLWVTLFTLSKVAELIDSLWICLKGRRPIFLHWYHHVSVLYFTWAAHEAAHPGMYFIAMNYTVHSVMYTYYFLMAIKAKPKWLNPIYITFMQIAQMLVGVIISCFGFYYSSMDASCAVDPFVLKVSAVIYASYLYLFMQFMIKRFFV--KNARAGQEGKVAA 314          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: GAX19602.1 (elongation of very long chain fatty acids protein 6 [Fistulifera solaris])

HSP 1 Score: 242.7 bits (618), Expect = 1.500e-60
Identity = 119/282 (42.20%), Postives = 172/282 (60.99%), Query Frame = 0
Query:   17 NSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENP-GIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVF--YIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILGGQGAAGAPK 296
            NS    Y     + P     Y+ +E  YD     DWMK   WVP+   ++Y + IF G++  + +  ++ + PLA WN  LS+FS +G +RV P +++   +  L    C  PE   G+ A GFW Q F+LSK+ EL DT FIV+ KKPL FLHWYHH++VLLFTW  Y   +P G  F++MNY VHA+MY YYFLMA++++P W  PI+IT+ QISQM VGV   V+  YI  +   E C + +++  +  VMY +YL+LFC+F  +R+ + G+ +  + K
Sbjct:   22 NSGNQKYLDFACLFPTFGKTYLPFELNYDPVGPRDWMKDNFWVPVACAIIYAIAIFWGRSYFEKRAAWNWRAPLALWNFGLSLFSTIGFLRVAPFVLFNIYSYTLRENCCFDPESHVGSGATGFWSQMFVLSKIPELFDTFFIVIHKKPLMFLHWYHHISVLLFTWHAYVNNSPTGAFFISMNYGVHAMMYFYYFLMAVRMKPKWFNPIWITVAQISQMFVGVFLTVYTTYILHVEEREDCLMRKDINQSALVMYGSYLFLFCKFFFERYYIRGKPSKTSKK 303          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: EWM25755.1 (fatty-acyl elongase [Nannochloropsis gaditana])

HSP 1 Score: 241.5 bits (615), Expect = 3.400e-60
Identity = 119/261 (45.59%), Postives = 163/261 (62.45%), Query Frame = 0
Query:   23 YTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRF 284
            + Q +Q+ P  EPFY   EK +D    + ++ +  W+P++++++Y   +     I  +K+P      LAYWNL L+ FSI+G +R+VPHL++   T       C  PE + G+ A G W   F LSKL EL+DT+F+ L+ +   FLHWYHHVTVL FTW  Y+  +PG+ F+AMNY+VHA+MY YYFLMAI+ +P WL PIYIT +QI QMV GV   V+     R   TC V   +L    V+Y +YLYLF EF VKRF
Sbjct:   37 FLQFWQLFPWSEPFYTRLEKEFDVRPWYLFVHANGWLPVVSIILYAAMVLLLPPI-TSKRPVKCDTALAYWNLLLAAFSILGALRIVPHLLWFLTTHSFKETVCTPPERMNGDGASGLWCLLFTLSKLVELVDTMFVCLKGRKPIFLHWYHHVTVLSFTWAAYSARHPGMYFIAMNYTVHAVMYSYYFLMAIKAKPKWLNPIYITFLQIFQMVAGVIITVYGFIYARDPSTCGVVPSVLYFQSVIYGSYLYLFLEFLVKRF 296          
BLAST of NO05G01770 vs. NCBI_GenBank
Match: ACV21066.1 (fatty acid elongase [Nannochloropsis oculata])

HSP 1 Score: 240.7 bits (613), Expect = 5.700e-60
Identity = 131/278 (47.12%), Postives = 170/278 (61.15%), Query Frame = 0
Query:   23 YTQMFQVLPALEPFYMNWEKT-YDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCY-TKENPGIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGV---ATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILGGQGAAGAPK 296
            +TQ+FQ  P L+P Y  +EK  Y S  V     + P +P+    +Y + I  G  +M ++   + K  LA WNL LSIFS  G+IR VPHL++  AT       C  P   YG  A G WV  FI SK+ EL+DTVFIV RK  LQFLHWYHH+TVLLF W  Y    + G+ FVAMNYSVHAIMY YY+L AI   P W+ P  IT+ QISQM+VGV   A++ +++Y     E C V ++ + A  +MY +YLYLFC+F V+RF+ GG+   G  K
Sbjct:   33 FTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLY--TDPEHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEK 308          
The following BLAST results are available for this feature:
BLAST of NO05G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28304.12.800e-14781.91fatty-acyl [Nannochloropsis gaditana][more]
EWM29833.16.300e-6748.70elongation of very long chain fatty acids protein ... [more]
XP_002293395.15.000e-6447.62long chain fatty acid elongase [Thalassiosira pseu... [more]
GAX19603.16.500e-6447.01elongation of very long chain fatty acids protein ... [more]
GAX09713.14.700e-6249.19elongation of very long chain fatty acids protein ... [more]
OEU18932.14.000e-6146.52GNS1/SUR4 membrane protein [Fragilariopsis cylindr... [more]
EWM25754.11.200e-6043.51fatty-acyl elongase [Nannochloropsis gaditana][more]
GAX19602.11.500e-6042.20elongation of very long chain fatty acids protein ... [more]
EWM25755.13.400e-6045.59fatty-acyl elongase [Nannochloropsis gaditana][more]
ACV21066.15.700e-6047.12fatty acid elongase [Nannochloropsis oculata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003691NSK003691Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01770.1NO05G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|391778gene_2966Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g102gene2355Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01770.1NO05G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01770 ID=NO05G01770|Name=NO05G01770|organism=Nannochloropsis oceanica|type=gene|length=3440bp
TTGCCAACTTTGATCTTATTTCATTTTCTTGAAAAGGGGGAATCCAGAAT
CGTCAGGCCTCTCAAAGTTTACACCCACCTTATTTGCTTGATCCGCTGAT
TAAAGTATGTCCGTCATTCAGGCACAGTGCCTACGAGACAAGGGTCGTCT
CCGAAGACCTGAGAAACAACAAGATAGAAAGAATAATGTGACATTGTTTC
CTGACAGGGAGTTAGAGGGGGAGGGGAGAGGGAGCCCGGGGGCCGATTCT
GACAGAAAGTGGGCAATATATTTGTGATGCTTAAAGGCCTGTAGTGGTGA
CCTATGGGTCGGAACGGGTTATTCCAGTCATCGACCCATCTGTTGTTTAT
TCTCTCGATTTCTAAAAAAATAATATTTTCAAAATGAAAGAAAAAAATTC
TTCATAGTTGAGAAACAAGTTTCTAGCCAAGCCATCTCCCTGCACGTGAC
GGGCGGTGTGTACAAGGCCTAAGTACAAATTCACCGCATCATGCTGATGT
GTGATAACTAGTGATTCCACTTTCATGTGGACGAGTCGCAGTCCACAATT
TGAACTTTGGTAAAGTTTAAAGATTGTAAAGGGTAAGGGAGTCAGGTTGG
AGTTCTTCATCAAAAGGCTGCTGATGTCCTTCTTCCAGGGTGGGGAACAG
GGGAGTACATCTCCATTGAAAAAAAAATCCTTCGTACCACTGGCGTGTGA
GGTGTGGGGTTTAAGGTGGGGACTGTCGATGGTCGGGTAAGAGGGGACTT
TGACCATGGAGAAGATGGCGACACCTCTTGCTCCCGGGTCCTACGTGGAG
CCCGAAAAGCAAAATGATCGGTTACCCTATTTTGCCGGGCCTTCATTGCT
TCATTAGTGCTCTTGCAAACATACTGTTAAAATGGTCCCACACGTCGTGT
GTAAAAATGCGAGTATGCACGCCAGCGGGGCATTCGATGGCTCTCGCAGT
CCGTGCCTCGAGACCCGATCTTTCTGGTGTATGGTGGTGGTAATGCGACG
CGCCAAAGAAAGAAAACGCTTTCTACGTTGCTCGCGGCCCCCCGCCACGC
AGCATCTGTCATGGTTGTCATGATTTGCTGGGTTAGCGAGGCATGGTGCT
TGGAGAGGGGAGGTGTCATGACGGGACGCCGGCATTTCTTTCCAGCACAT
TCCCAAACAGGATGCGGCCGCGTGCGCTTAGAAGAAAGGTATACGTCGAC
GCCTCGCCTTCTCAAATGCATGCCTAGGTCCGGGCGCGCTCAGTGGCGGA
GGCTGAGCACCACAATGCCGCATCCAAGACTGTCTTAATTCTCCCAATGC
CTACCTAGCTAGACCCACACACGACTTGCCCCACTGCCAAATCACGCGTT
GAAGGACAAGCTGGACGTGCTTACTGGTCCTCTTGTGCCTGCTGGGGCCG
CTGTGCATCCGTATGCCCGAGGCCAGCGGGTGTAGTGGATGGTATGCACA
TCGTTCAGCCTCTCCTCCAGTGAGCATTCTCGACAGCCGGCTGCCGGGCA
CACATGATGCACGACGCTAGGCGCAATTAATGAGCATCCGTCGAGGCATT
CCACGGCCATCGCTTCCACACGAATACAAGCAAGCATAGCTTCTTACTCA
CACGCACCCCACCCTCCCTCTCTCACAGACGGCATCAGAGCCAGCACAGG
ATCTATTCCTCATTCCGGTCAATCATGAAGTGGGTCCTGCAAGAAGGAGT
GGACTTCAAGCCCCACGGCCCCAACAGCCGCGGAACGATGTACACGCAAA
TGTTCCAAGTCCTCCCGGCCCTGGAGCCGTTCTACATGAACTGGGAGAAG
ACCTACGACTCTGCTATTGTATTTGACTGGATGAAGAGCGTGCCTTGGGT
TCCGATCTTGGCGGTGGTAGTTTATGTCGTAGGAATTTTCGGTGGACAAG
CCATTATGAAGAACAAGAAGCCCTTTGATCTAAAGTGGCCCTTGGCGTAC
TGGAACTTGGCTTTGTCCATATTTTCGATCATGGGCGTGATTCGCGTGGT
GCCTCACCTTGTCTACCTGACAGCGACCAAGGGGTTGAGTGTCGTGGCGT
GCGGGGCCCCGGAGCCTCTGTATGGCAACGCCGCGGTAGGTTTTTGGGTG
CAAGCCTTCATTCTGTCGAAACTGGCAGAGCTGATCGACACGGTGTTCAT
CGTTCTGCGGAAGAAGCCTCTACAGTTCTTGCACTGgtacgggggttggg
atgggggaatggtggagccaaggagagggaaagcgagttagcattcatgc
gctgctatgtgtcctttacctggcgcagagcgtttgtgcccattacccat
atatagggaaagaaaggaggaaaaaggacacagagggatccaaactgtcc
ttatgcagagatcaatcgccacaagaggcatgaaccataggaagtcacgc
cctccttttgttcgcccctccctcctcctccccttagGTACCACCACGTG
ACGGTCCTCCTGTTCACCTGGTTCTGCTACACGAAGGAGAATCCGGGTAT
CATTTTTGTGGCCATGAATTATTCGGTGCATGCCATTATGTATGGCTACT
ACTTCCTGgtacgtgatccctttctttctctctcctttctcccactccta
ttgtgcacgcgtgtctctaccccctgacatagatccttttctctctccct
tcttccatgccttcatctctctcttccttcttctctactctttcttcccg
tcctgtcgcttcctccttgcttcgctcctgttatatccaggcaacaacta
agcctctcttgacactgacccaccctccctccctcccgcccgcccgaccg
ccctcctcagATGGCCATTCAGGTCCGACCTTCCTGGCTGAAGCCAATCT
ATATCACCATGATGCAAATCTCCCAAATGGTGGTGGGCGTCGCCACTGCC
GTCTTTTACATCTACAAGATCCGATCGGGCGAGACATGCGCCGTGGATCA
GGAACTGCTTATTGCCTGTGGAGTGATGTACTCTACCTACCTGTATTTGT
TCTGTGAGTTTGCGGTAAAGAGGTTCATTTTAGGCGGGCAGGGGGCGGCA
GGGGCGCCGAAGGGAAAAACGAAGGCGCAGTAGGGGGGGGAAAGAGGGGG
ATATATGGAAGGGGGCATTAGCAGTGGTGGAGGTGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCAGC
AGGAGCGGCAATAGGAAGAGGATGAAGAGGAGTAGCAGTAAGATGAGGAG
GAGGAGGAAGAGGAGGAGGAGGAGGATTATGATGATGAGAAAGTGATTCC
TTTTTTCATTTGTCGTTGGGTTGGGTGAGTGGATGGGCGTCGGGTCGCTT
GTGGTTGTTTTGTGTCTCTGTGCTTATGTGGATGGGTGGG
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protein sequence of NO05G01770.1

>NO05G01770.1-protein ID=NO05G01770.1-protein|Name=NO05G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MKWVLQEGVDFKPHGPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVF
DWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIF
SIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKL
AELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYS
VHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRS
GETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILGGQGAAGAPKGKTKA
Q*
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Synonyms
Publications