NO05G01770.1, NO05G01770.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01770.1
Unique Name	NO05G01770.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2937
Alignment location	chr5:484310..487749 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:484310..487749 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G01770.1 vs.
Match: EWM28304.1 (fatty-acyl [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 2.800e-147
Identity = 249/304 (81.91%), Postives = 278/304 (91.45%), Query Frame = 0

Query:    1 MKWVLQEGVDFKPHGPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVFDWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIFSIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYSVHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRSGETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILG-----GQGAAGAPKGKTK 300
            MKW+L+EG+DF+P GPNSRG+ +TQ+FQV+PA+EPFYM WEK YDS+ V++WMKSVPWVPI  V++YVVGIFGGQA+MKN+KPFDLKWPLAYWNLALS+FSIMG++RVVPHL+YLTATKGL VVACGAPEPLYGNAAVGFWVQAFILSKLAELIDT FIVLRKKPLQFLHWYHHVTVLLFTWFCYT ENPGIIFVAMNYSVHAIMYGYYFLMA++VRPSWLKP +IT+MQISQMVVGVATA FYI KIR+GE CAVDQ+LL+ACGVMYSTYLYLFCEFAV+RFILG       G AG  K K +
Sbjct:   19 MKWILREGIDFQPEGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322

The following BLAST results are available for this feature:

BLAST of NO05G01770.1 vs.

BLAST of NO05G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28304.1	2.800e-147	81.91	fatty-acyl [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G01770	NO05G01770	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01770.1	NO05G01770.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01770.1.cds1	NO05G01770.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01770.1.cds2	NO05G01770.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01770.1.cds3	NO05G01770.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:484310..487749-
coding sequence from alignment at chr5:484310..487749-

mRNA sequence

>NO05G01770.1 ID=NO05G01770.1|Name=NO05G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2937bp
TTGCCAACTTTGATCTTATTTCATTTTCTTGAAAAGGGGGAATCCAGAAT
CGTCAGGCCTCTCAAAGTTTACACCCACCTTATTTGCTTGATCCGCTGAT
TAAAGTATGTCCGTCATTCAGGCACAGTGCCTACGAGACAAGGGTCGTCT
CCGAAGACCTGAGAAACAACAAGATAGAAAGAATAATGTGACATTGTTTC
CTGACAGGGAGTTAGAGGGGGAGGGGAGAGGGAGCCCGGGGGCCGATTCT
GACAGAAAGTGGGCAATATATTTGTGATGCTTAAAGGCCTGTAGTGGTGA
CCTATGGGTCGGAACGGGTTATTCCAGTCATCGACCCATCTGTTGTTTAT
TCTCTCGATTTCTAAAAAAATAATATTTTCAAAATGAAAGAAAAAAATTC
TTCATAGTTGAGAAACAAGTTTCTAGCCAAGCCATCTCCCTGCACGTGAC
GGGCGGTGTGTACAAGGCCTAAGTACAAATTCACCGCATCATGCTGATGT
GTGATAACTAGTGATTCCACTTTCATGTGGACGAGTCGCAGTCCACAATT
TGAACTTTGGTAAAGTTTAAAGATTGTAAAGGGTAAGGGAGTCAGGTTGG
AGTTCTTCATCAAAAGGCTGCTGATGTCCTTCTTCCAGGGTGGGGAACAG
GGGAGTACATCTCCATTGAAAAAAAAATCCTTCGTACCACTGGCGTGTGA
GGTGTGGGGTTTAAGGTGGGGACTGTCGATGGTCGGGTAAGAGGGGACTT
TGACCATGGAGAAGATGGCGACACCTCTTGCTCCCGGGTCCTACGTGGAG
CCCGAAAAGCAAAATGATCGGTTACCCTATTTTGCCGGGCCTTCATTGCT
TCATTAGTGCTCTTGCAAACATACTGTTAAAATGGTCCCACACGTCGTGT
GTAAAAATGCGAGTATGCACGCCAGCGGGGCATTCGATGGCTCTCGCAGT
CCGTGCCTCGAGACCCGATCTTTCTGGTGTATGGTGGTGGTAATGCGACG
CGCCAAAGAAAGAAAACGCTTTCTACGTTGCTCGCGGCCCCCCGCCACGC
AGCATCTGTCATGGTTGTCATGATTTGCTGGGTTAGCGAGGCATGGTGCT
TGGAGAGGGGAGGTGTCATGACGGGACGCCGGCATTTCTTTCCAGCACAT
TCCCAAACAGGATGCGGCCGCGTGCGCTTAGAAGAAAGGTATACGTCGAC
GCCTCGCCTTCTCAAATGCATGCCTAGGTCCGGGCGCGCTCAGTGGCGGA
GGCTGAGCACCACAATGCCGCATCCAAGACTGTCTTAATTCTCCCAATGC
CTACCTAGCTAGACCCACACACGACTTGCCCCACTGCCAAATCACGCGTT
GAAGGACAAGCTGGACGTGCTTACTGGTCCTCTTGTGCCTGCTGGGGCCG
CTGTGCATCCGTATGCCCGAGGCCAGCGGGTGTAGTGGATGGTATGCACA
TCGTTCAGCCTCTCCTCCAGTGAGCATTCTCGACAGCCGGCTGCCGGGCA
CACATGATGCACGACGCTAGGCGCAATTAATGAGCATCCGTCGAGGCATT
CCACGGCCATCGCTTCCACACGAATACAAGCAAGCATAGCTTCTTACTCA
CACGCACCCCACCCTCCCTCTCTCACAGACGGCATCAGAGCCAGCACAGG
ATCTATTCCTCATTCCGGTCAATCATGAAGTGGGTCCTGCAAGAAGGAGT
GGACTTCAAGCCCCACGGCCCCAACAGCCGCGGAACGATGTACACGCAAA
TGTTCCAAGTCCTCCCGGCCCTGGAGCCGTTCTACATGAACTGGGAGAAG
ACCTACGACTCTGCTATTGTATTTGACTGGATGAAGAGCGTGCCTTGGGT
TCCGATCTTGGCGGTGGTAGTTTATGTCGTAGGAATTTTCGGTGGACAAG
CCATTATGAAGAACAAGAAGCCCTTTGATCTAAAGTGGCCCTTGGCGTAC
TGGAACTTGGCTTTGTCCATATTTTCGATCATGGGCGTGATTCGCGTGGT
GCCTCACCTTGTCTACCTGACAGCGACCAAGGGGTTGAGTGTCGTGGCGT
GCGGGGCCCCGGAGCCTCTGTATGGCAACGCCGCGGTAGGTTTTTGGGTG
CAAGCCTTCATTCTGTCGAAACTGGCAGAGCTGATCGACACGGTGTTCAT
CGTTCTGCGGAAGAAGCCTCTACAGTTCTTGCACTGGTACCACCACGTGA
CGGTCCTCCTGTTCACCTGGTTCTGCTACACGAAGGAGAATCCGGGTATC
ATTTTTGTGGCCATGAATTATTCGGTGCATGCCATTATGTATGGCTACTA
CTTCCTGATGGCCATTCAGGTCCGACCTTCCTGGCTGAAGCCAATCTATA
TCACCATGATGCAAATCTCCCAAATGGTGGTGGGCGTCGCCACTGCCGTC
TTTTACATCTACAAGATCCGATCGGGCGAGACATGCGCCGTGGATCAGGA
ACTGCTTATTGCCTGTGGAGTGATGTACTCTACCTACCTGTATTTGTTCT
GTGAGTTTGCGGTAAAGAGGTTCATTTTAGGCGGGCAGGGGGCGGCAGGG
GCGCCGAAGGGAAAAACGAAGGCGCAGTAGGGGGGGGAAAGAGGGGGATA
TATGGAAGGGGGCATTAGCAGTGGTGGAGGTGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCAGCAGG
AGCGGCAATAGGAAGAGGATGAAGAGGAGTAGCAGTAAGATGAGGAGGAG
GAGGAAGAGGAGGAGGAGGAGGATTATGATGATGAGAAAGTGATTCCTTT
TTTCATTTGTCGTTGGGTTGGGTGAGTGGATGGGCGTCGGGTCGCTTGTG
GTTGTTTTGTGTCTCTGTGCTTATGTGGATGGGTGGG

protein sequence of NO05G01770.1

>NO05G01770.1-protein ID=NO05G01770.1-protein|Name=NO05G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MKWVLQEGVDFKPHGPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVF
DWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIF
SIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKL
AELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYS
VHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRS
GETCAVDQELLIACGVMYSTYLYLFCEFAVKRFILGGQGAAGAPKGKTKA
Q*

mRNA from alignment at chr5:484310..487749-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G01770.1 ID=NO05G01770.1|Name=NO05G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=3440bp|location=Sequence derived from alignment at chr5:484310..487749- (Nannochloropsis oceanica)
TTGCCAACTTTGATCTTATTTCATTTTCTTGAAAAGGGGGAATCCAGAAT
CGTCAGGCCTCTCAAAGTTTACACCCACCTTATTTGCTTGATCCGCTGAT
TAAAGTATGTCCGTCATTCAGGCACAGTGCCTACGAGACAAGGGTCGTCT
CCGAAGACCTGAGAAACAACAAGATAGAAAGAATAATGTGACATTGTTTC
CTGACAGGGAGTTAGAGGGGGAGGGGAGAGGGAGCCCGGGGGCCGATTCT
GACAGAAAGTGGGCAATATATTTGTGATGCTTAAAGGCCTGTAGTGGTGA
CCTATGGGTCGGAACGGGTTATTCCAGTCATCGACCCATCTGTTGTTTAT
TCTCTCGATTTCTAAAAAAATAATATTTTCAAAATGAAAGAAAAAAATTC
TTCATAGTTGAGAAACAAGTTTCTAGCCAAGCCATCTCCCTGCACGTGAC
GGGCGGTGTGTACAAGGCCTAAGTACAAATTCACCGCATCATGCTGATGT
GTGATAACTAGTGATTCCACTTTCATGTGGACGAGTCGCAGTCCACAATT
TGAACTTTGGTAAAGTTTAAAGATTGTAAAGGGTAAGGGAGTCAGGTTGG
AGTTCTTCATCAAAAGGCTGCTGATGTCCTTCTTCCAGGGTGGGGAACAG
GGGAGTACATCTCCATTGAAAAAAAAATCCTTCGTACCACTGGCGTGTGA
GGTGTGGGGTTTAAGGTGGGGACTGTCGATGGTCGGGTAAGAGGGGACTT
TGACCATGGAGAAGATGGCGACACCTCTTGCTCCCGGGTCCTACGTGGAG
CCCGAAAAGCAAAATGATCGGTTACCCTATTTTGCCGGGCCTTCATTGCT
TCATTAGTGCTCTTGCAAACATACTGTTAAAATGGTCCCACACGTCGTGT
GTAAAAATGCGAGTATGCACGCCAGCGGGGCATTCGATGGCTCTCGCAGT
CCGTGCCTCGAGACCCGATCTTTCTGGTGTATGGTGGTGGTAATGCGACG
CGCCAAAGAAAGAAAACGCTTTCTACGTTGCTCGCGGCCCCCCGCCACGC
AGCATCTGTCATGGTTGTCATGATTTGCTGGGTTAGCGAGGCATGGTGCT
TGGAGAGGGGAGGTGTCATGACGGGACGCCGGCATTTCTTTCCAGCACAT
TCCCAAACAGGATGCGGCCGCGTGCGCTTAGAAGAAAGGTATACGTCGAC
GCCTCGCCTTCTCAAATGCATGCCTAGGTCCGGGCGCGCTCAGTGGCGGA
GGCTGAGCACCACAATGCCGCATCCAAGACTGTCTTAATTCTCCCAATGC
CTACCTAGCTAGACCCACACACGACTTGCCCCACTGCCAAATCACGCGTT
GAAGGACAAGCTGGACGTGCTTACTGGTCCTCTTGTGCCTGCTGGGGCCG
CTGTGCATCCGTATGCCCGAGGCCAGCGGGTGTAGTGGATGGTATGCACA
TCGTTCAGCCTCTCCTCCAGTGAGCATTCTCGACAGCCGGCTGCCGGGCA
CACATGATGCACGACGCTAGGCGCAATTAATGAGCATCCGTCGAGGCATT
CCACGGCCATCGCTTCCACACGAATACAAGCAAGCATAGCTTCTTACTCA
CACGCACCCCACCCTCCCTCTCTCACAGACGGCATCAGAGCCAGCACAGG
ATCTATTCCTCATTCCGGTCAATCATGAAGTGGGTCCTGCAAGAAGGAGT
GGACTTCAAGCCCCACGGCCCCAACAGCCGCGGAACGATGTACACGCAAA
TGTTCCAAGTCCTCCCGGCCCTGGAGCCGTTCTACATGAACTGGGAGAAG
ACCTACGACTCTGCTATTGTATTTGACTGGATGAAGAGCGTGCCTTGGGT
TCCGATCTTGGCGGTGGTAGTTTATGTCGTAGGAATTTTCGGTGGACAAG
CCATTATGAAGAACAAGAAGCCCTTTGATCTAAAGTGGCCCTTGGCGTAC
TGGAACTTGGCTTTGTCCATATTTTCGATCATGGGCGTGATTCGCGTGGT
GCCTCACCTTGTCTACCTGACAGCGACCAAGGGGTTGAGTGTCGTGGCGT
GCGGGGCCCCGGAGCCTCTGTATGGCAACGCCGCGGTAGGTTTTTGGGTG
CAAGCCTTCATTCTGTCGAAACTGGCAGAGCTGATCGACACGGTGTTCAT
CGTTCTGCGGAAGAAGCCTCTACAGTTCTTGCACTGGTACGGGGGTTGGG
ATGGGGGAATGGTGGAGCCAAGGAGAGGGAAAGCGAGTTAGCATTCATGC
GCTGCTATGTGTCCTTTACCTGGCGCAGAGCGTTTGTGCCCATTACCCAT
ATATAGGGAAAGAAAGGAGGAAAAAGGACACAGAGGGATCCAAACTGTCC
TTATGCAGAGATCAATCGCCACAAGAGGCATGAACCATAGGAAGTCACGC
CCTCCTTTTGTTCGCCCCTCCCTCCTCCTCCCCTTAGGTACCACCACGTG
ACGGTCCTCCTGTTCACCTGGTTCTGCTACACGAAGGAGAATCCGGGTAT
CATTTTTGTGGCCATGAATTATTCGGTGCATGCCATTATGTATGGCTACT
ACTTCCTGGTACGTGATCCCTTTCTTTCTCTCTCCTTTCTCCCACTCCTA
TTGTGCACGCGTGTCTCTACCCCCTGACATAGATCCTTTTCTCTCTCCCT
TCTTCCATGCCTTCATCTCTCTCTTCCTTCTTCTCTACTCTTTCTTCCCG
TCCTGTCGCTTCCTCCTTGCTTCGCTCCTGTTATATCCAGGCAACAACTA
AGCCTCTCTTGACACTGACCCACCCTCCCTCCCTCCCGCCCGCCCGACCG
CCCTCCTCAGATGGCCATTCAGGTCCGACCTTCCTGGCTGAAGCCAATCT
ATATCACCATGATGCAAATCTCCCAAATGGTGGTGGGCGTCGCCACTGCC
GTCTTTTACATCTACAAGATCCGATCGGGCGAGACATGCGCCGTGGATCA
GGAACTGCTTATTGCCTGTGGAGTGATGTACTCTACCTACCTGTATTTGT
TCTGTGAGTTTGCGGTAAAGAGGTTCATTTTAGGCGGGCAGGGGGCGGCA
GGGGCGCCGAAGGGAAAAACGAAGGCGCAGTAGGGGGGGGAAAGAGGGGG
ATATATGGAAGGGGGCATTAGCAGTGGTGGAGGTGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCAGC
AGGAGCGGCAATAGGAAGAGGATGAAGAGGAGTAGCAGTAAGATGAGGAG
GAGGAGGAAGAGGAGGAGGAGGAGGATTATGATGATGAGAAAGTGATTCC
TTTTTTCATTTGTCGTTGGGTTGGGTGAGTGGATGGGCGTCGGGTCGCTT
GTGGTTGTTTTGTGTCTCTGTGCTTATGTGGATGGGTGGG

Coding sequence (CDS) from alignment at chr5:484310..487749-

>NO05G01770.1 ID=NO05G01770.1|Name=NO05G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr5:484310..487749- (Nannochloropsis oceanica)
ATGAAGTGGGTCCTGCAAGAAGGAGTGGACTTCAAGCCCCACGGCCCCAA
CAGCCGCGGAACGATGTACACGCAAATGTTCCAAGTCCTCCCGGCCCTGG
AGCCGTTCTACATGAACTGGGAGAAGACCTACGACTCTGCTATTGTATTT
GACTGGATGAAGAGCGTGCCTTGGGTTCCGATCTTGGCGGTGGTAGTTTA
TGTCGTAGGAATTTTCGGTGGACAAGCCATTATGAAGAACAAGAAGCCCT
TTGATCTAAAGTGGCCCTTGGCGTACTGGAACTTGGCTTTGTCCATATTT
TCGATCATGGGCGTGATTCGCGTGGTGCCTCACCTTGTCTACCTGACAGC
GACCAAGGGGTTGAGTGTCGTGGCGTGCGGGGCCCCGGAGCCTCTGTATG
GCAACGCCGCGGTAGGTTTTTGGGTGCAAGCCTTCATTCTGTCGAAACTG
GCAGAGCTGATCGACACGGTGTTCATCGTTCTGCGGAAGAAGCCTCTACA
GTTCTTGCACTGGTACCACCACGTGACGGTCCTCCTGTTCACCTGGTTCT
GCTACACGAAGGAGAATCCGGGTATCATTTTTGTGGCCATGAATTATTCG
GTGCATGCCATTATGTATGGCTACTACTTCCTGATGGCCATTCAGGTCCG
ACCTTCCTGGCTGAAGCCAATCTATATCACCATGATGCAAATCTCCCAAA
TGGTGGTGGGCGTCGCCACTGCCGTCTTTTACATCTACAAGATCCGATCG
GGCGAGACATGCGCCGTGGATCAGGAACTGCTTATTGCCTGTGGAGTGAT
GTACTCTACCTACCTGTATTTGTTCTGTGAGTTTGCGGTAAAGAGGTTCA
TTTTAGGCGGGCAGGGGGCGGCAGGGGCGCCGAAGGGAAAAACGAAGGCG
CAGTAG

Synonyms

Publications