NO05G01760, NO05G01760 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01760
Unique Name	NO05G01760
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3244
Alignment location	chr5:481066..484309 +

Link to JBrowse

Properties


Property Name	Value
Description	Lipid droplet surface protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:481066..484309 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

[Close]

BLAST of NO05G01760 vs. NCBI_GenBank
Match: EWM28204.1 (lipid droplet surface protein [Nannochloropsis gaditana])

HSP 1 Score: 380.6 bits (976), Expect = 5.700e-102
Identity = 196/290 (67.59%), Postives = 234/290 (80.69%), Query Frame = 0

Query:   80 MSTLTGR-QQANPQQAASVPKHNSMSTMGRIKIRLNRARNLKGPEILGMSNCLVVFTFEGKREESSVKVNDIAPAWHEEITFDNVLYPPSSKICITIVYRSGKKDEVLGVACPGSNLWTTGETPPQDRWLPVATKEGIYAGELNFHVHWTKTQVRYRQSVELLQRAVLKTQALTSPFEPSIERLVALFSDFLFFLGSRIKRLGNTQKGVVLALLVAVLAAVATCITVPALVFFPITALLVGGVLLGSVCALPLVMVGGWIVLCTRPVQQKVVGPVVERMLKMERVKKLLT 369
            MS LTGR Q ANPQQ AS+P+    STMGR+++RLNRARNLKGPEILGMSNCLVVFT+EGKREESSVKVNDIAPAWHEE+TFD V YPPSSKI ITIVYRSGK DEVLGVACPGSNLWTTG  PPQDRWLP+ATKEGIYAGELNFH+HWTKT+V+YR +V LLQR VLKTQ  T P EP++ER +AL S     +  +I+ +G TQK V  A+L AVLA+    + VPA++F P+T +L+GG    S  ALP++    W+++CT+PVQ KV+GP+VER+L+ E VKK+LT
Sbjct:    1 MSPLTGRLQSANPQQ-ASMPR----STMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLT 285

[Close]

BLAST of NO05G01760 vs. NCBI_GenBank
Match: EWM22821.1 (hypothetical protein Naga_100375g4 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 1.700e-13
Identity = 86/316 (27.22%), Postives = 132/316 (41.77%), Query Frame = 0

Query:  106 MGRIKIRLNRARNLKGPEILGMS---NCLVVFTF-----EGKREESSVK------VNDIAPAWHEEIT-FDNVLYPPSSKICITIVY-RSGKKDEVLGVACPGSNLWTTGE-----TPPQDRW----------------------LPVATKEGIYAGELNFHVHWTKTQVRYRQSVELLQRAVLKTQALTSPFEPSIERLVALFSDFL---FFLGSRIKRL------GNTQKGVVLALLVAVLAAVATCITVPALVFFPITALLVGGVLLGSVCALPLVMVGGWIVLCTRPVQQKVVGPVVERMLKMERVKKLLTL 370
            +G+ ++ + RARNL    +  +    NC   F F     E  R ESS K      +   AP W E++  + +VLYP   +  IT+VY +  KK  V G      + WT         PP   W                       P       + GE+   + W++T+  YR  V  L   V +TQAL  P +P ++ ++  F D      F+    KR+        TQ   V+    +V       + VPALVFFPIT L+        +C  P+     W++L ++PVQ ++V P+ +  L     ++ LTL
Sbjct:   14 VGKAELFIERARNLNPQAVERVKDWVNCDAFFIFNLGRSEAHRAESSRKNAVEYGLIQTAPIWQEKVAEWQDVLYPSPVQATITLVYEKENKKQAVSGFYNFRGHEWTLQHGLGPVFPPVYHWRGLRSVRPSSSQAXXXXXXXXXXPTKLGHREFRGEVKAAIRWSQTEPEYRGYVLFLSYCVSRTQALLQPLQPFLDPVLGTFLDIFVLSVFVEGWWKRMLVPAWTFLTQNRSVVVAAASVFLLPFLLLWVPALVFFPITLLIFWVSFFSLLCLTPIGCALVWLLLASKPVQGRLVRPIFQACLASPACRRWLTL 329

The following BLAST results are available for this feature:

BLAST of NO05G01760 vs. NCBI_GenBank

BLAST of NO05G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2


Match Name	E-value	Identity	Description
EWM28204.1	5.700e-102	67.59	lipid droplet surface protein [Nannochloropsis gad...	[more]
EWM22821.1	1.700e-13	27.22	hypothetical protein Naga_100375g4 [Nannochloropsi...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL086	nonsL086	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR118	ngnoR118	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003692	NSK003692	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G01760.1	NO05G01760.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584007	gene_2965	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100004g99	gene2354	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G01760.1	NO05G01760.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G01760 ID=NO05G01760|Name=NO05G01760|organism=Nannochloropsis oceanica|type=gene|length=3244bp
AAGGGAGTCTGTCAAAGTGCAGAGTTATGAAAAGCCGTATGCCTTTCGAA
ATGAAAATCGCGTCTCGTTCGGCCTTGACCTCCTCTACACCTCCGTGACC
TACTCCCGGAGCTAGCCAAGAGCCTTCAGCGTCATAAGCGAGGCACGCAT
GATTCCTCTCCTGGATACATGCAACGCACACAAATGCTTGTGTCGCAGCA
GCGTAAGATTACGGCGGTCAGAGAAGGCAATGCAGTCGAGCCAGCAGGAC
GAGTCCGTTGTGTCGGTTGCTCCTTGCTTGTGAAGACACAACGTCTTCAC
GAACTGGACAAGGCGCGGCTCTGCGGAAGCTCAAGAGCCTCCTCTTGGTG
GTGCTGCTGGTGTAGCCCCAGACTACATTAAAGCTGACATATTTGTAGAA
ACTGAATATTGGATGAGTCGCGAAAGCGTGTGGCGTCATCGTCAGTCGCG
ACGAGCGAGACGGGCGACACGACCTGCTACGTCCGAGTCCAAGCGAGGCG
AACGCCATGCTCTCTTTCTACCACATCCTGACCTACTTCTTGTGCTCCCC
TCTCTCTCCTCAACTCATAGGCTTTGCCTCTGCCTTATTGTTCCGTTTCG
ACCAAGCAACTGTTCCAACAGGAACACAAAGCGACAACCATCATCCTCCA
TGAGTACTCTTACTGGACGCCAGCAGGCTAACCCTCAGCAAGCAGCCAGC
GTACCCAAGCATAACTCCATGAGCACGATGGGTCGGATCAAAATCCGCCT
GAACCGCGCCCGCAATCTCAAGgtatggatatgggtgtaggtagggtgtg
atgaattgtagggaaggatcccgaaggccgaaggaacaggagcgcaccgt
tggcgttatttgccacacgagtagcatatggggagccggcccggaaacag
aagtgatgggtacatttaaaagatgtacgtgaatgattgggcgttgcggt
gaagcctggtttcagggcgtgctggtggaaaaaaaagggggaaaagtagt
gcctggctgtgttgatgtttcacatctccttttcatccattacacacacg
catgacagGGTCCCGAAATACTAGGGATGAGCAACTGCTTGGTGGTCTTT
ACTTTCGAAGGGAAACGAGAGGAGAGTTCGGTCAAGgtatgtcttgttcg
ttttcgtagttggttaggtaaaaaaacagggctgattaaagcgattcaag
cgaaagcgattccccctcctcactccttccagatcagcacaccggcgtga
aacgatcgagcccccaaatgaaaaaatatatcctccttcccactctcacc
aatgcccctgcccccctcccttccctccctccctcagGTTAACGACATAG
CCCCCGCCTGGCACGAGGAGATCACCTTCGACAATGTTCTCTACCCTCCT
TCCTCCAAAATATGCATCACCATCGTGTACCGCTCGGGAAAGAAAGATGA
AGTATTGGGGGTGGCATGTCCGGGCTCGAACTTGTGGACGACGGGGGAAA
CCCCTCCGCAAgtaggtttattaaagggaggagggatggacggagggagg
gatggcagggcgctaattacgcagacaggatcgcttcttcttaaatgtcg
gagctacactgtccgaccaggatggagagaaggaaaaagatctgaaacat
gttccatgcgaaatcctatttcttgtcttacgcatcttgtgtgtattttt
acccatactccgcagGATCGGTGGTTGCCCGTGGCGACCAAGGAGGGCAT
CTACGCGGGAGAGTTGAACTTTCACGTGCACTGGACCAAGACCCAAGTGC
GATACCGACAGTCGGTGGAGCTCTTGCAGgtacgtccttttcttgccgcc
actttctttcttgtcagcagtccgtctattgcttccacttgccctcacat
gccctcttcctcccctccttccctcccttcctctccttctctccctgcac
caacagCGCGCTGTCCTCAAAACCCAGGCACTTACGTCTCCCTTCGAGCC
CAGCATTGAGAGACTCGTCGCCCTCTTCTCGGACTTCCTCTTCTTTCTTG
GCAGCCGAATCAAACGCCTCGGCAACACCCAAAAGGGTGTAGTCCTTGCG
TTGCTCGTCGCCGTGCTGGCTGCTGTTGCCACTTGCATCACGGTGCCGGC
ATTGGTGTTCTTCCCTATTACCGCTCTGTTAGTGGGGGGGGTGCTGCTGG
GATCTGTGTGTGCGTTGCCGCTGGTGATGGTGGGAGGATGGATTGTGCTG
TGCACCCGACCAGTGCAGCAGAAGGTGGTGGGGCCGGTGGTTGAGCGGAT
GTTGAAGATGGAGAGGGTGAAGAAGCTCTTGACCCTCGATTAGGAGCGGA
GGAATGGAGAGGGGAGAGATGGAAGCAGCGGAATGACGTTTTTAGCTCTC
GATATGAGTTTGTCACTCGTTCCATCGATTTCATTTGTTTCTTTTTTGGG
TTTGAAGAAAGAAGAAGGGAGAGGAGAAAAAGGATGGAAAGAGATTCGGT
AAGGTGAAAGGAGAAAGTCTGTGCCTGTGGTTGGCATGTGGGAGATTTCG
AGGGTATCGATGTAAGAGTATGTCTCGGTGCGGAGGGACGGTAAATGCGG
CATGTGGGAGAGAGCATGGTAAGAGAAGGGAAGGATGGAGGGAGATGAGA
ATGATCGATCGATCGTGTCTTTACGTCTGGGTGGTGTGCTGGCGATGTAT
GTGATGCGAAAGGGGGCCACTTGCATGCGACCTCTCTCTACGTAAGTCAA
GGTGAGAGTGAATCGCACAAACGGAAAGGGAAATAAAGTGAACGAGGTAG
AAGCGCGAATAAAGCAGAAAGAGGCATCATACCGACTGGGTCCATCAAAA
ATGTTTTTCTTTTCTTGTTTGTTGTCTTTGTCGTTTTGTTTTTGGTGTTG
TGGTGGAGAGGGTGCTGCTGCTTCCGACTCGATGCTGCTCTCCTTCGGCA
CCCTCCCTCCCTATCTCCTTCCGTGCCGTGTGCTTCAGGACTTTGCCTCG
TCTTCTTTTTATCTTCCCATCCCACACAACATCCATGGAAATGCTCCCTG
ATCTAACAATCGATGAGGCCAGCCACTCACTCGCCTGCCTCATCATGACG
ACCCACTCAACTTAAAGCATCTTTCACCCTCGCGACACTTATGCAATCTA
TCAGTCCTTCGAATCCCCCCTCCTCCCCTTATTCCTCTCAATCACTCTAT
AAATCATCCTCATAAACAAACGCATCCTCTCTCACACCCACCCA

protein sequence of NO05G01760.1

>NO05G01760.1-protein ID=NO05G01760.1-protein|Name=NO05G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MSRESVWRHRQSRRARRATRPATSESKRGERHALFLPHPDLLLVLPSLSS
THRLCLCLIVPFRPSNCSNRNTKRQPSSSMSTLTGRQQANPQQAASVPKH
NSMSTMGRIKIRLNRARNLKGPEILGMSNCLVVFTFEGKREESSVKVNDI
APAWHEEITFDNVLYPPSSKICITIVYRSGKKDEVLGVACPGSNLWTTGE
TPPQDRWLPVATKEGIYAGELNFHVHWTKTQVRYRQSVELLQRAVLKTQA
LTSPFEPSIERLVALFSDFLFFLGSRIKRLGNTQKGVVLALLVAVLAAVA
TCITVPALVFFPITALLVGGVLLGSVCALPLVMVGGWIVLCTRPVQQKVV
GPVVERMLKMERVKKLLTLD*

Synonyms

Publications