NO05G01760.1, NO05G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01760.1
Unique NameNO05G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2426
Alignment locationchr5:481066..484309 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:481066..484309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01760.1 vs.
Match: EWM28204.1 (lipid droplet surface protein [Nannochloropsis gaditana])

HSP 1 Score: 380.6 bits (976), Expect = 5.700e-102
Identity = 196/290 (67.59%), Postives = 234/290 (80.69%), Query Frame = 0 
Query:   80 MSTLTGR-QQANPQQAASVPKHNSMSTMGRIKIRLNRARNLKGPEILGMSNCLVVFTFEGKREESSVKVNDIAPAWHEEITFDNVLYPPSSKICITIVYRSGKKDEVLGVACPGSNLWTTGETPPQDRWLPVATKEGIYAGELNFHVHWTKTQVRYRQSVELLQRAVLKTQALTSPFEPSIERLVALFSDFLFFLGSRIKRLGNTQKGVVLALLVAVLAAVATCITVPALVFFPITALLVGGVLLGSVCALPLVMVGGWIVLCTRPVQQKVVGPVVERMLKMERVKKLLT 369
            MS LTGR Q ANPQQA S+P+    STMGR+++RLNRARNLKGPEILGMSNCLVVFT+EGKREESSVKVNDIAPAWHEE+TFD V YPPSSKI ITIVYRSGK DEVLGVACPGSNLWTTG  PPQDRWLP+ATKEGIYAGELNFH+HWTKT+V+YR +V LLQR VLKTQ  T P EP++ER +AL S     +  +I+ +G TQK V  A+L AVLA+    + VPA++F P+T +L+GG    S  ALP++    W+++CT+PVQ KV+GP+VER+L+ E VKK+LT
Sbjct:    1 MSPLTGRLQSANPQQA-SMPR----STMGRLRVRLNRARNLKGPEILGMSNCLVVFTYEGKREESSVKVNDIAPAWHEEVTFDKVPYPPSSKISITIVYRSGKTDEVLGVACPGSNLWTTGNAPPQDRWLPIATKEGIYAGELNFHIHWTKTEVQYRPAVRLLQRGVLKTQEFTRPLEPALERAMALTSGIGSTVSRKIEGMGRTQKRVTGAVLAAVLASGGFFLVVPAILFLPVTLILLGGFFFCSFLALPVLTSFMWVLVCTKPVQSKVIGPLVERLLRYETVKKVLT 285
The following BLAST results are available for this feature:
BLAST of NO05G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28204.15.700e-10267.59lipid droplet surface protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01760NO05G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01760.1NO05G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01760.1.cds1NO05G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01760.1.cds2NO05G01760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01760.1.cds3NO05G01760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01760.1.cds4NO05G01760.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01760.1.cds5NO05G01760.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01760.1 ID=NO05G01760.1|Name=NO05G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2426bp
AAGGGAGTCTGTCAAAGTGCAGAGTTATGAAAAGCCGTATGCCTTTCGAA
ATGAAAATCGCGTCTCGTTCGGCCTTGACCTCCTCTACACCTCCGTGACC
TACTCCCGGAGCTAGCCAAGAGCCTTCAGCGTCATAAGCGAGGCACGCAT
GATTCCTCTCCTGGATACATGCAACGCACACAAATGCTTGTGTCGCAGCA
GCGTAAGATTACGGCGGTCAGAGAAGGCAATGCAGTCGAGCCAGCAGGAC
GAGTCCGTTGTGTCGGTTGCTCCTTGCTTGTGAAGACACAACGTCTTCAC
GAACTGGACAAGGCGCGGCTCTGCGGAAGCTCAAGAGCCTCCTCTTGGTG
GTGCTGCTGGTGTAGCCCCAGACTACATTAAAGCTGACATATTTGTAGAA
ACTGAATATTGGATGAGTCGCGAAAGCGTGTGGCGTCATCGTCAGTCGCG
ACGAGCGAGACGGGCGACACGACCTGCTACGTCCGAGTCCAAGCGAGGCG
AACGCCATGCTCTCTTTCTACCACATCCTGACCTACTTCTTGTGCTCCCC
TCTCTCTCCTCAACTCATAGGCTTTGCCTCTGCCTTATTGTTCCGTTTCG
ACCAAGCAACTGTTCCAACAGGAACACAAAGCGACAACCATCATCCTCCA
TGAGTACTCTTACTGGACGCCAGCAGGCTAACCCTCAGCAAGCAGCCAGC
GTACCCAAGCATAACTCCATGAGCACGATGGGTCGGATCAAAATCCGCCT
GAACCGCGCCCGCAATCTCAAGGGTCCCGAAATACTAGGGATGAGCAACT
GCTTGGTGGTCTTTACTTTCGAAGGGAAACGAGAGGAGAGTTCGGTCAAG
GTTAACGACATAGCCCCCGCCTGGCACGAGGAGATCACCTTCGACAATGT
TCTCTACCCTCCTTCCTCCAAAATATGCATCACCATCGTGTACCGCTCGG
GAAAGAAAGATGAAGTATTGGGGGTGGCATGTCCGGGCTCGAACTTGTGG
ACGACGGGGGAAACCCCTCCGCAAGATCGGTGGTTGCCCGTGGCGACCAA
GGAGGGCATCTACGCGGGAGAGTTGAACTTTCACGTGCACTGGACCAAGA
CCCAAGTGCGATACCGACAGTCGGTGGAGCTCTTGCAGCGCGCTGTCCTC
AAAACCCAGGCACTTACGTCTCCCTTCGAGCCCAGCATTGAGAGACTCGT
CGCCCTCTTCTCGGACTTCCTCTTCTTTCTTGGCAGCCGAATCAAACGCC
TCGGCAACACCCAAAAGGGTGTAGTCCTTGCGTTGCTCGTCGCCGTGCTG
GCTGCTGTTGCCACTTGCATCACGGTGCCGGCATTGGTGTTCTTCCCTAT
TACCGCTCTGTTAGTGGGGGGGGTGCTGCTGGGATCTGTGTGTGCGTTGC
CGCTGGTGATGGTGGGAGGATGGATTGTGCTGTGCACCCGACCAGTGCAG
CAGAAGGTGGTGGGGCCGGTGGTTGAGCGGATGTTGAAGATGGAGAGGGT
GAAGAAGCTCTTGACCCTCGATTAGGAGCGGAGGAATGGAGAGGGGAGAG
ATGGAAGCAGCGGAATGACGTTTTTAGCTCTCGATATGAGTTTGTCACTC
GTTCCATCGATTTCATTTGTTTCTTTTTTGGGTTTGAAGAAAGAAGAAGG
GAGAGGAGAAAAAGGATGGAAAGAGATTCGGTAAGGTGAAAGGAGAAAGT
CTGTGCCTGTGGTTGGCATGTGGGAGATTTCGAGGGTATCGATGTAAGAG
TATGTCTCGGTGCGGAGGGACGGTAAATGCGGCATGTGGGAGAGAGCATG
GTAAGAGAAGGGAAGGATGGAGGGAGATGAGAATGATCGATCGATCGTGT
CTTTACGTCTGGGTGGTGTGCTGGCGATGTATGTGATGCGAAAGGGGGCC
ACTTGCATGCGACCTCTCTCTACGTAAGTCAAGGTGAGAGTGAATCGCAC
AAACGGAAAGGGAAATAAAGTGAACGAGGTAGAAGCGCGAATAAAGCAGA
AAGAGGCATCATACCGACTGGGTCCATCAAAAATGTTTTTCTTTTCTTGT
TTGTTGTCTTTGTCGTTTTGTTTTTGGTGTTGTGGTGGAGAGGGTGCTGC
TGCTTCCGACTCGATGCTGCTCTCCTTCGGCACCCTCCCTCCCTATCTCC
TTCCGTGCCGTGTGCTTCAGGACTTTGCCTCGTCTTCTTTTTATCTTCCC
ATCCCACACAACATCCATGGAAATGCTCCCTGATCTAACAATCGATGAGG
CCAGCCACTCACTCGCCTGCCTCATCATGACGACCCACTCAACTTAAAGC
ATCTTTCACCCTCGCGACACTTATGCAATCTATCAGTCCTTCGAATCCCC
CCTCCTCCCCTTATTCCTCTCAATCACTCTATAAATCATCCTCATAAACA
AACGCATCCTCTCTCACACCCACCCA
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protein sequence of NO05G01760.1

>NO05G01760.1-protein ID=NO05G01760.1-protein|Name=NO05G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MSRESVWRHRQSRRARRATRPATSESKRGERHALFLPHPDLLLVLPSLSS
THRLCLCLIVPFRPSNCSNRNTKRQPSSSMSTLTGRQQANPQQAASVPKH
NSMSTMGRIKIRLNRARNLKGPEILGMSNCLVVFTFEGKREESSVKVNDI
APAWHEEITFDNVLYPPSSKICITIVYRSGKKDEVLGVACPGSNLWTTGE
TPPQDRWLPVATKEGIYAGELNFHVHWTKTQVRYRQSVELLQRAVLKTQA
LTSPFEPSIERLVALFSDFLFFLGSRIKRLGNTQKGVVLALLVAVLAAVA
TCITVPALVFFPITALLVGGVLLGSVCALPLVMVGGWIVLCTRPVQQKVV
GPVVERMLKMERVKKLLTLD*
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mRNA from alignment at chr5:481066..484309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01760.1 ID=NO05G01760.1|Name=NO05G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3244bp|location=Sequence derived from alignment at chr5:481066..484309+ (Nannochloropsis oceanica)
AAGGGAGTCTGTCAAAGTGCAGAGTTATGAAAAGCCGTATGCCTTTCGAA
ATGAAAATCGCGTCTCGTTCGGCCTTGACCTCCTCTACACCTCCGTGACC
TACTCCCGGAGCTAGCCAAGAGCCTTCAGCGTCATAAGCGAGGCACGCAT
GATTCCTCTCCTGGATACATGCAACGCACACAAATGCTTGTGTCGCAGCA
GCGTAAGATTACGGCGGTCAGAGAAGGCAATGCAGTCGAGCCAGCAGGAC
GAGTCCGTTGTGTCGGTTGCTCCTTGCTTGTGAAGACACAACGTCTTCAC
GAACTGGACAAGGCGCGGCTCTGCGGAAGCTCAAGAGCCTCCTCTTGGTG
GTGCTGCTGGTGTAGCCCCAGACTACATTAAAGCTGACATATTTGTAGAA
ACTGAATATTGGATGAGTCGCGAAAGCGTGTGGCGTCATCGTCAGTCGCG
ACGAGCGAGACGGGCGACACGACCTGCTACGTCCGAGTCCAAGCGAGGCG
AACGCCATGCTCTCTTTCTACCACATCCTGACCTACTTCTTGTGCTCCCC
TCTCTCTCCTCAACTCATAGGCTTTGCCTCTGCCTTATTGTTCCGTTTCG
ACCAAGCAACTGTTCCAACAGGAACACAAAGCGACAACCATCATCCTCCA
TGAGTACTCTTACTGGACGCCAGCAGGCTAACCCTCAGCAAGCAGCCAGC
GTACCCAAGCATAACTCCATGAGCACGATGGGTCGGATCAAAATCCGCCT
GAACCGCGCCCGCAATCTCAAGGTATGGATATGGGTGTAGGTAGGGTGTG
ATGAATTGTAGGGAAGGATCCCGAAGGCCGAAGGAACAGGAGCGCACCGT
TGGCGTTATTTGCCACACGAGTAGCATATGGGGAGCCGGCCCGGAAACAG
AAGTGATGGGTACATTTAAAAGATGTACGTGAATGATTGGGCGTTGCGGT
GAAGCCTGGTTTCAGGGCGTGCTGGTGGAAAAAAAAGGGGGAAAAGTAGT
GCCTGGCTGTGTTGATGTTTCACATCTCCTTTTCATCCATTACACACACG
CATGACAGGGTCCCGAAATACTAGGGATGAGCAACTGCTTGGTGGTCTTT
ACTTTCGAAGGGAAACGAGAGGAGAGTTCGGTCAAGGTATGTCTTGTTCG
TTTTCGTAGTTGGTTAGGTAAAAAAACAGGGCTGATTAAAGCGATTCAAG
CGAAAGCGATTCCCCCTCCTCACTCCTTCCAGATCAGCACACCGGCGTGA
AACGATCGAGCCCCCAAATGAAAAAATATATCCTCCTTCCCACTCTCACC
AATGCCCCTGCCCCCCTCCCTTCCCTCCCTCCCTCAGGTTAACGACATAG
CCCCCGCCTGGCACGAGGAGATCACCTTCGACAATGTTCTCTACCCTCCT
TCCTCCAAAATATGCATCACCATCGTGTACCGCTCGGGAAAGAAAGATGA
AGTATTGGGGGTGGCATGTCCGGGCTCGAACTTGTGGACGACGGGGGAAA
CCCCTCCGCAAGTAGGTTTATTAAAGGGAGGAGGGATGGACGGAGGGAGG
GATGGCAGGGCGCTAATTACGCAGACAGGATCGCTTCTTCTTAAATGTCG
GAGCTACACTGTCCGACCAGGATGGAGAGAAGGAAAAAGATCTGAAACAT
GTTCCATGCGAAATCCTATTTCTTGTCTTACGCATCTTGTGTGTATTTTT
ACCCATACTCCGCAGGATCGGTGGTTGCCCGTGGCGACCAAGGAGGGCAT
CTACGCGGGAGAGTTGAACTTTCACGTGCACTGGACCAAGACCCAAGTGC
GATACCGACAGTCGGTGGAGCTCTTGCAGGTACGTCCTTTTCTTGCCGCC
ACTTTCTTTCTTGTCAGCAGTCCGTCTATTGCTTCCACTTGCCCTCACAT
GCCCTCTTCCTCCCCTCCTTCCCTCCCTTCCTCTCCTTCTCTCCCTGCAC
CAACAGCGCGCTGTCCTCAAAACCCAGGCACTTACGTCTCCCTTCGAGCC
CAGCATTGAGAGACTCGTCGCCCTCTTCTCGGACTTCCTCTTCTTTCTTG
GCAGCCGAATCAAACGCCTCGGCAACACCCAAAAGGGTGTAGTCCTTGCG
TTGCTCGTCGCCGTGCTGGCTGCTGTTGCCACTTGCATCACGGTGCCGGC
ATTGGTGTTCTTCCCTATTACCGCTCTGTTAGTGGGGGGGGTGCTGCTGG
GATCTGTGTGTGCGTTGCCGCTGGTGATGGTGGGAGGATGGATTGTGCTG
TGCACCCGACCAGTGCAGCAGAAGGTGGTGGGGCCGGTGGTTGAGCGGAT
GTTGAAGATGGAGAGGGTGAAGAAGCTCTTGACCCTCGATTAGGAGCGGA
GGAATGGAGAGGGGAGAGATGGAAGCAGCGGAATGACGTTTTTAGCTCTC
GATATGAGTTTGTCACTCGTTCCATCGATTTCATTTGTTTCTTTTTTGGG
TTTGAAGAAAGAAGAAGGGAGAGGAGAAAAAGGATGGAAAGAGATTCGGT
AAGGTGAAAGGAGAAAGTCTGTGCCTGTGGTTGGCATGTGGGAGATTTCG
AGGGTATCGATGTAAGAGTATGTCTCGGTGCGGAGGGACGGTAAATGCGG
CATGTGGGAGAGAGCATGGTAAGAGAAGGGAAGGATGGAGGGAGATGAGA
ATGATCGATCGATCGTGTCTTTACGTCTGGGTGGTGTGCTGGCGATGTAT
GTGATGCGAAAGGGGGCCACTTGCATGCGACCTCTCTCTACGTAAGTCAA
GGTGAGAGTGAATCGCACAAACGGAAAGGGAAATAAAGTGAACGAGGTAG
AAGCGCGAATAAAGCAGAAAGAGGCATCATACCGACTGGGTCCATCAAAA
ATGTTTTTCTTTTCTTGTTTGTTGTCTTTGTCGTTTTGTTTTTGGTGTTG
TGGTGGAGAGGGTGCTGCTGCTTCCGACTCGATGCTGCTCTCCTTCGGCA
CCCTCCCTCCCTATCTCCTTCCGTGCCGTGTGCTTCAGGACTTTGCCTCG
TCTTCTTTTTATCTTCCCATCCCACACAACATCCATGGAAATGCTCCCTG
ATCTAACAATCGATGAGGCCAGCCACTCACTCGCCTGCCTCATCATGACG
ACCCACTCAACTTAAAGCATCTTTCACCCTCGCGACACTTATGCAATCTA
TCAGTCCTTCGAATCCCCCCTCCTCCCCTTATTCCTCTCAATCACTCTAT
AAATCATCCTCATAAACAAACGCATCCTCTCTCACACCCACCCA
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Coding sequence (CDS) from alignment at chr5:481066..484309+

>NO05G01760.1 ID=NO05G01760.1|Name=NO05G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr5:481066..484309+ (Nannochloropsis oceanica)
ATGAGTCGCGAAAGCGTGTGGCGTCATCGTCAGTCGCGACGAGCGAGACG
GGCGACACGACCTGCTACGTCCGAGTCCAAGCGAGGCGAACGCCATGCTC
TCTTTCTACCACATCCTGACCTACTTCTTGTGCTCCCCTCTCTCTCCTCA
ACTCATAGGCTTTGCCTCTGCCTTATTGTTCCGTTTCGACCAAGCAACTG
TTCCAACAGGAACACAAAGCGACAACCATCATCCTCCATGAGTACTCTTA
CTGGACGCCAGCAGGCTAACCCTCAGCAAGCAGCCAGCGTACCCAAGCAT
AACTCCATGAGCACGATGGGTCGGATCAAAATCCGCCTGAACCGCGCCCG
CAATCTCAAGGGTCCCGAAATACTAGGGATGAGCAACTGCTTGGTGGTCT
TTACTTTCGAAGGGAAACGAGAGGAGAGTTCGGTCAAGGTTAACGACATA
GCCCCCGCCTGGCACGAGGAGATCACCTTCGACAATGTTCTCTACCCTCC
TTCCTCCAAAATATGCATCACCATCGTGTACCGCTCGGGAAAGAAAGATG
AAGTATTGGGGGTGGCATGTCCGGGCTCGAACTTGTGGACGACGGGGGAA
ACCCCTCCGCAAGATCGGTGGTTGCCCGTGGCGACCAAGGAGGGCATCTA
CGCGGGAGAGTTGAACTTTCACGTGCACTGGACCAAGACCCAAGTGCGAT
ACCGACAGTCGGTGGAGCTCTTGCAGCGCGCTGTCCTCAAAACCCAGGCA
CTTACGTCTCCCTTCGAGCCCAGCATTGAGAGACTCGTCGCCCTCTTCTC
GGACTTCCTCTTCTTTCTTGGCAGCCGAATCAAACGCCTCGGCAACACCC
AAAAGGGTGTAGTCCTTGCGTTGCTCGTCGCCGTGCTGGCTGCTGTTGCC
ACTTGCATCACGGTGCCGGCATTGGTGTTCTTCCCTATTACCGCTCTGTT
AGTGGGGGGGGTGCTGCTGGGATCTGTGTGTGCGTTGCCGCTGGTGATGG
TGGGAGGATGGATTGTGCTGTGCACCCGACCAGTGCAGCAGAAGGTGGTG
GGGCCGGTGGTTGAGCGGATGTTGAAGATGGAGAGGGTGAAGAAGCTCTT
GACCCTCGATTAG
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Synonyms
Publications