NO05G01620, NO05G01620 (gene) Nannochloropsis oceanica

Overview
NameNO05G01620
Unique NameNO05G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length878
Alignment locationchr5:448680..449557 -

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Properties
Property NameValue
DescriptionLight harvesting complex protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:448680..449557 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0009579thylakoid
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: EWM28183.1 (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 391.3 bits (1004), Expect = 2.200e-105
Identity = 192/210 (91.43%), Postives = 203/210 (96.67%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            MMR++ LLGLLSSAAAFIPATFNTGK++YARKN+VVASVSD+IGADTETGGIWDPLGLSQNEGS+RKYRECELKHGRVAMAAMLGIFVQ +YHLPD VF+NPRPLAALQQVYEQRPEAIWQIIVGLGVIEFT GRQKEDRAPGDL FG+SFIPKSE+EFE LQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL GHLNPFGDGQGFF
Sbjct:    1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPFGDGQGFF 210
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: XP_005853581.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU22777.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 362.8 bits (930), Expect = 8.200e-97
Identity = 179/196 (91.33%), Postives = 190/196 (96.94%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL 197
            MMR++ LLGLLSSAAAFIPATFNTGK++YARKN+VVASVSD+IGADTETGGIWDPLGLSQNEGS+RKYRECELKHGRVAMAAMLGIFVQ +YHLPD VF+NPRPLAALQQVYEQRPEAIWQIIVGLGVIEFT GRQKEDRAPGDL FG+SFIPKSE+EFE LQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL
Sbjct:    1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL 196
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: EWM30498.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 238.0 bits (606), Expect = 3.100e-59
Identity = 121/211 (57.35%), Postives = 150/211 (71.09%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQ-KEDRAPGDLGFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            M  +   L LL  + AF+P           R   V  +V++MIG+D ET G++DPLGL+++E S+ + R  ELKHGRVAM A LG  VQS YHLPD VF+NPRPLAAL QVY +RP A WQI + +G IE T G+Q   +RAPGD+GFGA+FIP   E+F  LQLKELKNGRLAM+A +G  +QE LTGQGP+EQ+LEGH +PFGDGQG F
Sbjct:    1 MKTAFAFLALLGVSTAFMPTA-----PRMTRGRSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: CEM11606.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 223.0 bits (567), Expect = 1.000e-54
Identity = 113/205 (55.12%), Postives = 142/205 (69.27%), Query Frame = 0 
Query:   10 LLSSAAAFIPATFNTG---KTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDL-GFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            L+  A AF+P T   G       AR    + +V  + GAD ETGG+WDPLGLSQNE ++  YR  ELKHGRV M A+LG+ VQ+ + LPD VFNNPRPL A+ QV++QRPEAI QI++ +G  E    RQ  +  PG L  FGA+F P+ E +FE LQ KELKNGRLAM+   G L+QE LTGQGP+EQ+  GH++PFGDGQG+F
Sbjct:   11 LVVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPVFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPFGDGQGYF 215
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: EWM29860.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 220.7 bits (561), Expect = 5.000e-54
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 0 
Query:   38 SVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLG-FGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            S SDMIG D ETGG++DPLG S++E S+ KYR+ ELKHGRVAM A LG  VQS  HLPD VF+NPRPL AL Q+  +RP AI QI++ + +IE TSG+Q  + APG LG FG +F P+ E E   +QLKELKNGRLAMVA +G  +QE LTGQGP+EQ+  GH++PFGDGQG F
Sbjct:    2 SASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDPELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGLF 175
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: EWM25765.1 (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 1.500e-42
Identity = 102/214 (47.66%), Postives = 141/214 (65.89%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYH-LPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQ-KEDRAPGDLGFGASFIP--KSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            M  ++ L+G L+ A+AF+PA     +T    + +   +V+D++G+D ETGG+WDPL  S++EGS+ +YR  ELKHGR+AM A+LG++V   YH L D   +       ++ + E    A  QI+  +GVIE T G+Q  E++APGDLGFG +F P     E+F  LQLKELKNGRLAM+ + G LLQE +TGQ   EQ+   HL+PFGDGQGFF
Sbjct:    1 MKSAMVLVGSLAVASAFVPAAPKMSRT----RGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKIS-----PGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: CEM27246.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 179.1 bits (453), Expect = 1.700e-41
Identity = 103/194 (53.09%), Postives = 128/194 (65.98%), Query Frame = 0 
Query:   15 AAFIP-ATFNTGKTTYA-RKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSV-YHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQK-EDRAPGDLG-FGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPF 204
            AAF+P A   +  T  A R      SV +MIGAD ETGG++DPL  S++E S+ + R  ELKHGR+AM A LG FVQS   HLPD VF+ PRPL+AL +V  +RP A  QI+  +  IE   GRQ  E++APGDLG FG SF     EEF   QL+ELKNGRLAM+  MG ++QE LTGQ   EQ+  G++NPF
Sbjct:   20 AAFVPSAPLRSLPTRRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: CEM02552.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 177.9 bits (450), Expect = 3.700e-41
Identity = 102/214 (47.66%), Postives = 136/214 (63.55%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFIPATFNTG--KTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIW-QIIVGLGVIEFTSGRQK-EDRAPGDLGFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            MM+ +    L+++A+AF+P+    G  K     +     +V DMIGAD ET G+WDPLG S++E S+ +YR  ELKHGRVAM A+LG FV  ++H P         L A+ QV    P A W QI+  +  IE + G+Q  E+RAPGDLGFG +       EF  LQLKE+KNGRLAM+A  G L+QE +TGQ  ++Q+ EGH++PFGDGQG F
Sbjct:    1 MMKLMVFAALIAAASAFVPSAPLRGLDKLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWH-PLYDGKVEPGLKAISQV----PSAGWLQILATIAAIELSIGKQDFENRAPGDLGFGINPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: XP_005852776.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU23058.1 light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.6 bits (431), Expect = 6.000e-39
Identity = 96/214 (44.86%), Postives = 133/214 (62.15%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFI-PATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQN--EGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFG-ASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            M  +  L+  L++A+AF+ PA+  +  +    +  V   +S ++G+D E    +DPLGL++N  E ++  YR  ELKHGRV M A +G  VQ +YHLPD  F   +P+ AL +V  +RP A  QI + +  +E      ++  APGDL F      P+  EE   LQLKELKNGRLAM+A+ G   QEY+TGQGPVEQ+L GH++PFGDGQG F
Sbjct:    1 MRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVSMDISGIVGSDVEVPE-FDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPDGPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYTAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 213
[Close]
BLAST of NO05G01620 vs. NCBI_GenBank
Match: EWM21948.1 (fucoxanthin chlorophyll a c binding protein [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 6.000e-39
Identity = 96/214 (44.86%), Postives = 133/214 (62.15%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFI-PATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQN--EGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFG-ASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            M  +  L+  L++A+AF+ PA+  +  +    +  V   +S ++G+D E    +DPLGL++N  E ++  YR  ELKHGRV M A +G  VQ +YHLPD  F   +P+ AL +V  +RP A  QI + +  +E      ++  APGDL F      P+  EE   LQLKELKNGRLAM+A+ G   QEY+TGQGPVEQ+L GH++PFGDGQG F
Sbjct:   14 MRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVSMDISGIVGSDVEVPE-FDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPDGPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYTAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 226
The following BLAST results are available for this feature:
BLAST of NO05G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28183.12.200e-10591.43light harvesting complex protein [Nannochloropsis ... [more]
XP_005853581.18.200e-9791.33light harvesting complex protein [Nannochloropsis ... [more]
EWM30498.13.100e-5957.35light-harvesting protein [Nannochloropsis gaditana... [more]
CEM11606.11.000e-5455.12unnamed protein product [Vitrella brassicaformis C... [more]
EWM29860.15.000e-5462.07light-harvesting protein [Nannochloropsis gaditana... [more]
EWM25765.11.500e-4247.66light harvesting complex protein [Nannochloropsis ... [more]
CEM27246.11.700e-4153.09unnamed protein product [Vitrella brassicaformis C... [more]
CEM02552.13.700e-4147.66unnamed protein product [Vitrella brassicaformis C... [more]
XP_005852776.16.000e-3944.86light-harvesting protein [Nannochloropsis gaditana... [more]
EWM21948.16.000e-3944.86fucoxanthin chlorophyll a c binding protein [Nanno... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003709NSK003709Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01620.1NO05G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526692gene_2950Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Lhcv3gene2343Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01620.1NO05G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01620 ID=NO05G01620|Name=NO05G01620|organism=Nannochloropsis oceanica|type=gene|length=878bp
ATGATGCGCTCTATCACTTTGCTGGGGTTGCTGTCCTCCGCTGCCGCTTT
CATTCCCGCCACCTTCAACACGGGGAAGACAACCTATGCCCGCAAGAACG
TGGTGGTGGCCTCTGTCTCTGACATGATCGGCGCTGACACCGAAACCGGC
GGCATCTGGGACCCGTTGGGCTTGAGCCAAAACGAGGGGTCCATCCGCAA
GTACCGTGAGTGCGAACTCAAGCATGGCCGCGTGGCCATGGCGGCCATGC
TTGGCATATTTGTCCAGAGCGTGTACCATCTTCCGGACGCCGTCTTCAAC
AACCCCCGCCCCCTGGCCGCTCTTCAGCAAGTGTACGAGCAACGCCCGGA
GGCGATCTGGCAGATCATCGTTGGTCTCGGTGTGATTGAGTTCACGAGCG
GAAGGCAAAAGGAGGACCGTGCCCCCGGCGACCTTGGATTTGGTGCTTCC
TTCATCCCCAAGTCGGAGGAAGAGTTTGAGGTGCTGCAGTTGAAGGAGCT
CAAGAACGGGCGGTTGGCAATGGTCGCCTCCATGGGCGCTCTGCTTCAGG
AGTACCTCACGGGCCAGGGACCCGTCGAGCAAGTTTTgtaagtacttcgt
gtggagaatagtaggggactcaaggcagaggaaatgggtttgaagacatg
agttcatatcgcgtaagcgtgtactaaagcaaatctcgcacatcatcacc
accaccactgcacctctacagGGAGGGCCACTTGAACCCCTTCGGCGATG
GACAGGGCTTTTTCTGTGAGTACTCGAATAATGCTGGCATGGGAGGACAG
GATGAAAGAGAAATGTCTAGTAATGCATATCTTTCTTATACACACATTTT
TTACTCCCTGACAACCATTTTTCACTGA
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protein sequence of NO05G01620.1

>NO05G01620.1-protein ID=NO05G01620.1-protein|Name=NO05G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETG
GIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFN
NPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFGAS
FIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHL
NPFGDGQGFFCEYSNNAGMGGQDEREMSSNAYLSYTHIFYSLTTIFH*
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Synonyms
Publications