NO05G01620.1, NO05G01620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01620.1
Unique NameNO05G01620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length744
Alignment locationchr5:448680..449557 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:448680..449557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01620.1 vs.
Match: EWM28183.1 (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 391.3 bits (1004), Expect = 2.200e-105
Identity = 192/210 (91.43%), Postives = 203/210 (96.67%), Query Frame = 0 
Query:    1 MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHLNPFGDGQGFF 211
            MMR++ LLGLLSSAAAFIPATFNTGK++YARKN+VVASVSD+IGADTETGGIWDPLGLSQNEGS+RKYRECELKHGRVAMAAMLGIFVQ +YHLPD VF+NPRPLAALQQVYEQRPEAIWQIIVGLGVIEFT GRQKEDRAPGDL FG+SFIPKSE+EFE LQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL GHLNPFGDGQGFF
Sbjct:    1 MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPFGDGQGFF 210
The following BLAST results are available for this feature:
BLAST of NO05G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28183.12.200e-10591.43light harvesting complex protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01620NO05G01620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01620.1NO05G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01620.1.cds1NO05G01620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01620.1.cds2NO05G01620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01620.1 ID=NO05G01620.1|Name=NO05G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=744bp
ATGATGCGCTCTATCACTTTGCTGGGGTTGCTGTCCTCCGCTGCCGCTTT
CATTCCCGCCACCTTCAACACGGGGAAGACAACCTATGCCCGCAAGAACG
TGGTGGTGGCCTCTGTCTCTGACATGATCGGCGCTGACACCGAAACCGGC
GGCATCTGGGACCCGTTGGGCTTGAGCCAAAACGAGGGGTCCATCCGCAA
GTACCGTGAGTGCGAACTCAAGCATGGCCGCGTGGCCATGGCGGCCATGC
TTGGCATATTTGTCCAGAGCGTGTACCATCTTCCGGACGCCGTCTTCAAC
AACCCCCGCCCCCTGGCCGCTCTTCAGCAAGTGTACGAGCAACGCCCGGA
GGCGATCTGGCAGATCATCGTTGGTCTCGGTGTGATTGAGTTCACGAGCG
GAAGGCAAAAGGAGGACCGTGCCCCCGGCGACCTTGGATTTGGTGCTTCC
TTCATCCCCAAGTCGGAGGAAGAGTTTGAGGTGCTGCAGTTGAAGGAGCT
CAAGAACGGGCGGTTGGCAATGGTCGCCTCCATGGGCGCTCTGCTTCAGG
AGTACCTCACGGGCCAGGGACCCGTCGAGCAAGTTTTGGAGGGCCACTTG
AACCCCTTCGGCGATGGACAGGGCTTTTTCTGTGAGTACTCGAATAATGC
TGGCATGGGAGGACAGGATGAAAGAGAAATGTCTAGTAATGCATATCTTT
CTTATACACACATTTTTTACTCCCTGACAACCATTTTTCACTGA
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protein sequence of NO05G01620.1

>NO05G01620.1-protein ID=NO05G01620.1-protein|Name=NO05G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MMRSITLLGLLSSAAAFIPATFNTGKTTYARKNVVVASVSDMIGADTETG
GIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSVYHLPDAVFN
NPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRAPGDLGFGAS
FIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLEGHL
NPFGDGQGFFCEYSNNAGMGGQDEREMSSNAYLSYTHIFYSLTTIFH*
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mRNA from alignment at chr5:448680..449557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01620.1 ID=NO05G01620.1|Name=NO05G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at chr5:448680..449557- (Nannochloropsis oceanica)
ATGATGCGCTCTATCACTTTGCTGGGGTTGCTGTCCTCCGCTGCCGCTTT
CATTCCCGCCACCTTCAACACGGGGAAGACAACCTATGCCCGCAAGAACG
TGGTGGTGGCCTCTGTCTCTGACATGATCGGCGCTGACACCGAAACCGGC
GGCATCTGGGACCCGTTGGGCTTGAGCCAAAACGAGGGGTCCATCCGCAA
GTACCGTGAGTGCGAACTCAAGCATGGCCGCGTGGCCATGGCGGCCATGC
TTGGCATATTTGTCCAGAGCGTGTACCATCTTCCGGACGCCGTCTTCAAC
AACCCCCGCCCCCTGGCCGCTCTTCAGCAAGTGTACGAGCAACGCCCGGA
GGCGATCTGGCAGATCATCGTTGGTCTCGGTGTGATTGAGTTCACGAGCG
GAAGGCAAAAGGAGGACCGTGCCCCCGGCGACCTTGGATTTGGTGCTTCC
TTCATCCCCAAGTCGGAGGAAGAGTTTGAGGTGCTGCAGTTGAAGGAGCT
CAAGAACGGGCGGTTGGCAATGGTCGCCTCCATGGGCGCTCTGCTTCAGG
AGTACCTCACGGGCCAGGGACCCGTCGAGCAAGTTTTGTAAGTACTTCGT
GTGGAGAATAGTAGGGGACTCAAGGCAGAGGAAATGGGTTTGAAGACATG
AGTTCATATCGCGTAAGCGTGTACTAAAGCAAATCTCGCACATCATCACC
ACCACCACTGCACCTCTACAGGGAGGGCCACTTGAACCCCTTCGGCGATG
GACAGGGCTTTTTCTGTGAGTACTCGAATAATGCTGGCATGGGAGGACAG
GATGAAAGAGAAATGTCTAGTAATGCATATCTTTCTTATACACACATTTT
TTACTCCCTGACAACCATTTTTCACTGA
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Coding sequence (CDS) from alignment at chr5:448680..449557-

>NO05G01620.1 ID=NO05G01620.1|Name=NO05G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at chr5:448680..449557- (Nannochloropsis oceanica)
ATGATGCGCTCTATCACTTTGCTGGGGTTGCTGTCCTCCGCTGCCGCTTT
CATTCCCGCCACCTTCAACACGGGGAAGACAACCTATGCCCGCAAGAACG
TGGTGGTGGCCTCTGTCTCTGACATGATCGGCGCTGACACCGAAACCGGC
GGCATCTGGGACCCGTTGGGCTTGAGCCAAAACGAGGGGTCCATCCGCAA
GTACCGTGAGTGCGAACTCAAGCATGGCCGCGTGGCCATGGCGGCCATGC
TTGGCATATTTGTCCAGAGCGTGTACCATCTTCCGGACGCCGTCTTCAAC
AACCCCCGCCCCCTGGCCGCTCTTCAGCAAGTGTACGAGCAACGCCCGGA
GGCGATCTGGCAGATCATCGTTGGTCTCGGTGTGATTGAGTTCACGAGCG
GAAGGCAAAAGGAGGACCGTGCCCCCGGCGACCTTGGATTTGGTGCTTCC
TTCATCCCCAAGTCGGAGGAAGAGTTTGAGGTGCTGCAGTTGAAGGAGCT
CAAGAACGGGCGGTTGGCAATGGTCGCCTCCATGGGCGCTCTGCTTCAGG
AGTACCTCACGGGCCAGGGACCCGTCGAGCAAGTTTTGGAGGGCCACTTG
AACCCCTTCGGCGATGGACAGGGCTTTTTCTGTGAGTACTCGAATAATGC
TGGCATGGGAGGACAGGATGAAAGAGAAATGTCTAGTAATGCATATCTTT
CTTATACACACATTTTTTACTCCCTGACAACCATTTTTCACTGA
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Synonyms
Publications