NO05G01530, NO05G01530 (gene) Nannochloropsis oceanica

Overview
NameNO05G01530
Unique NameNO05G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr5:429682..431550 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal large subunit pseudouridine synthase a
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:429682..431550 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of NO05G01530 vs. NCBI_GenBank
Match: EWM28290.1 (ribosomal large subunit pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 368.2 bits (944), Expect = 3.600e-98
Identity = 219/464 (47.20%), Postives = 280/464 (60.34%), Query Frame = 0
Query:    1 MHVASTPKTIHDLDALGAQVDLSLLYVDDHLIVVNKQVGLSTIPGNTLVKGEGTDEASSIEVKPPVPLESSTADAVMLPSLLALDEDLKQYSAVSAQPALAQGNDTTSSSPPLAAXXXXXXXXXXXXXXXXXXXXKRTHQELWMDMLTEDPVTLQHTLNLSADPYLARTLASLLAHKSSVPRKRHIFVEWGVRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKER-----------TLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            M     P +   L AL A+ +L +LYVD  +I+VNK  GL+TIPGN+LVK E  +   S                                 + S + A    ND  SS+    +                    +RTHQELWMDMLT+D ++L+ ++N+ AD +LA+  ASL+AHKSSVPRKR  F++WG+R LKA  + +  +YE L +AFEA+EG R DSVQTRLL VFQ +KTVHRLDCETSG  VLART++AARSLS QFREK+V KRY+ALV     WPQ +GE+ LPIR DRETRPKQ++D + GK+ +TLFR   +GT    D   + + RVELTPLTGRTHQLRVHMAALGHPI+GDSIYS+ D+   S+M  F+KP+        +E++          GCV E++E+           T     ARLHLHAE+L F HP SGER+ F A A F
Sbjct:    1 MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGS--------------------------------GSSSTRGAAQDTNDIRSSTEQFMS-----------------KKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRV--LGTQRMGD---KEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPF--------QENI----------GCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_076716452.1 (RNA pseudouridine synthase [Motiliproteus sp. MSK22-1] >OMH38764.1 RNA pseudouridine synthase [Motiliproteus sp. MSK22-1])

HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34
Identity = 98/262 (37.40%), Postives = 131/262 (50.00%), Query Frame = 0
Query:  192 VRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            + I+ A S ++       L +   +  N QDSV  RL + F  ++ VHRLDC TSG +VLA    + R+LS QF+E+K  KRY+A + G P      G V LP+R D E RPKQ++D E+GK + T ++ +            E  TRV LTP+TGR+HQLRVHM A+GHPI GD  Y+ G+  T +D                                              RLHLHAE L   HP+SGE++ F A  PF
Sbjct:    2 IEIIYADSQIVLINKPHDLLSVPGRGPNNQDSVLLRLQQQFPTIRIVHRLDCATSGVMVLALDADSHRALSIQFQERKTAKRYIARIYGQP--NNDSGSVDLPLRCDWENRPKQMVDFEQGKSALTHWQVIEYS---------EDCTRVALTPVTGRSHQLRVHMLAMGHPIAGDRFYASGEALTAAD----------------------------------------------RLHLHAESLELFHPLSGEKVCFTAPCPF 206          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_067868322.1 (RNA pseudouridine synthase [Neptuniibacter marinus])

HSP 1 Score: 147.1 bits (370), Expect = 1.300e-31
Identity = 91/235 (38.72%), Postives = 125/235 (53.19%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R+  +F   + VHRLD  TSG +VLA T++A RSL+  F+E++  KRY A++ G P   Q  G V LP+R D E RP Q++D E+GK + T ++ +   ++       E+ TRVELTP+TGR+HQLRVHM A+GHPILGD  Y+                           D EG                   + +  RL LHAE LSF HPI+GE + F    PF
Sbjct:   29 DKQDCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISGTP--EQSEGSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESS-------EQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYA---------------------------DTEG-------------------QAKSDRLLLHAEQLSFPHPITGEFVEFFVPCPF 208          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_017404835.1 (RluA family pseudouridine synthase [Delftia tsuruhatensis] >SFB55137.1 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [Delftia tsuruhatensis])

HSP 1 Score: 143.3 bits (360), Expect = 1.900e-30
Identity = 88/237 (37.13%), Postives = 126/237 (53.16%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R L+ +     VHRLD  TSG +++AR++ + R LS  F +++V KRYVA+V G P   Q      + LPI +D E RP +++D  +GK S+TL+R +    AA     +   TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+                                              +  ++    RL LHA++L   HP+SGE +RFE+ APF
Sbjct:   45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPTARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQAAEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: OJX26189.1 (RNA pseudouridine synthase [Delftia sp. 67-8])

HSP 1 Score: 143.3 bits (360), Expect = 1.900e-30
Identity = 88/237 (37.13%), Postives = 126/237 (53.16%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R L+ +     VHRLD  TSG +++AR++ + R LS  F +++V KRYVA+V G P   Q      + LPI +D E RP +++D  +GK S+TL+R +    AA     +   TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+                                              +  ++    RL LHA++L   HP+SGE +RFE+ APF
Sbjct:   45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPTARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQAAEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: PKO35414.1 (RNA pseudouridine synthase [Betaproteobacteria bacterium HGW-Betaproteobacteria-7])

HSP 1 Score: 142.9 bits (359), Expect = 2.400e-30
Identity = 95/263 (36.12%), Postives = 128/263 (48.67%), Query Frame = 0
Query:  191 GVRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            G+ IL A   ++       L +   +  ++ D + +RL   F     VHRLD  TSG L++AR      +LS  FRE++VGKRY+A V+GC       GE+ LP+  D   RP+Q +D E GK S T +R V +           + +RVEL P+TGR+HQLRVHMAALGHPILGD +Y  G+  T                                               G RLHLHA  L+F HP+S E ++F  +APF
Sbjct:   11 GLEILYADDALLVVDKPAGLLSVPGRGADKADCLISRLQAKFADALAVHRLDMSTSGLLLVARGAAMHSALSRLFRERQVGKRYLAEVEGC--LATTAGEIELPLICDWPNRPRQKVDFEIGKHSLTRYRLVSIDAE-------RQTSRVELEPVTGRSHQLRVHMAALGHPILGDELYGSGNPET-----------------------------------------------GERLHLHATDLAFVHPLSAEYLQFHCKAPF 217          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_043791159.1 (RluA family pseudouridine synthase [Delftia tsuruhatensis] >KEH08354.1 pseudouridine synthase [Delftia tsuruhatensis])

HSP 1 Score: 142.5 bits (358), Expect = 3.200e-30
Identity = 87/237 (36.71%), Postives = 126/237 (53.16%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R L+ +     VHRLD  TSG +++AR++ + R LS  F +++V KRYVA+V G P+  Q      + LPI +D E RP +++D  +GK S+TL+R +    A      +   TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+                                              +  ++    RL LHA++L   HP+SGE +RFE+ APF
Sbjct:   45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPVARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_047216906.1 (RluA family pseudouridine synthase [Delftia lacustris])

HSP 1 Score: 142.1 bits (357), Expect = 4.200e-30
Identity = 87/237 (36.71%), Postives = 125/237 (52.74%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R L+ +     VHRLD  TSG +++AR++ + R LS  F +++V KRYVA+V G P   Q      + LPI +D E RP +++D  +GK S+TL+R +    A      +   TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+                                              +  ++    RL LHA++L   HP+SGE +RFE+ APF
Sbjct:   45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPAARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPSAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_016446332.1 (MULTISPECIES: RluA family pseudouridine synthase [Delftia] >EPD42763.1 tRNA pseudouridine32 synthase/23S rRNA pseudouridine746 synthase [Delftia acidovorans CCUG 274B] >SDZ19999.1 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [Delftia lacustris])

HSP 1 Score: 141.7 bits (356), Expect = 5.500e-30
Identity = 87/237 (36.71%), Postives = 125/237 (52.74%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R L+ +     VHRLD  TSG +++AR++ + R LS  F +++V KRYVA+V G P   Q      + LPI +D E RP +++D  +GK S+TL+R +    A      +   TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+                                              +  ++    RL LHA++L   HP+SGE +RFE+ APF
Sbjct:   45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPTARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233          
BLAST of NO05G01530 vs. NCBI_GenBank
Match: WP_046240204.1 (MULTISPECIES: RluA family pseudouridine synthase [Delftia] >AOV01215.1 RNA pseudouridine synthase [Delftia tsuruhatensis])

HSP 1 Score: 141.7 bits (356), Expect = 5.500e-30
Identity = 87/237 (36.71%), Postives = 125/237 (52.74%), Query Frame = 0
Query:  219 NRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRG--EVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            ++QD +  R L+ +     VHRLD  TSG +++AR++ + R LS  F +++V KRYVA+V G P   Q      + LPI +D E RP +++D  +GK S+TL+R +    A      +   TRV+L P+TGRTHQLRVHMAALGHPILGD++Y+                                              +  ++    RL LHA++L   HP+SGE +RFE+ APF
Sbjct:   45 DKQDCLSARALQRWPDALVVHRLDQATSGLVIMARSLASQRLLSEAFAQRRVHKRYVAVVAGSPAARQAGAWQSIDLPIAADWERRPLRIIDAVQGKPSQTLWRALPGAQATEVRDAI--TTRVQLQPVTGRTHQLRVHMAALGHPILGDALYA----------------------------------------------DAAVQALSPRLLLHAQLLELAHPLSGETLRFESAAPF 233          
The following BLAST results are available for this feature:
BLAST of NO05G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28290.13.600e-9847.20ribosomal large subunit pseudouridine synthase a [... [more]
WP_076716452.13.600e-3437.40RNA pseudouridine synthase [Motiliproteus sp. MSK2... [more]
WP_067868322.11.300e-3138.72RNA pseudouridine synthase [Neptuniibacter marinus... [more]
WP_017404835.11.900e-3037.13RluA family pseudouridine synthase [Delftia tsuruh... [more]
OJX26189.11.900e-3037.13RNA pseudouridine synthase [Delftia sp. 67-8][more]
PKO35414.12.400e-3036.12RNA pseudouridine synthase [Betaproteobacteria bac... [more]
WP_043791159.13.200e-3036.71RluA family pseudouridine synthase [Delftia tsuruh... [more]
WP_047216906.14.200e-3036.71RluA family pseudouridine synthase [Delftia lacust... [more]
WP_016446332.15.500e-3036.71MULTISPECIES: RluA family pseudouridine synthase [... [more]
WP_046240204.15.500e-3036.71MULTISPECIES: RluA family pseudouridine synthase [... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003710NSK003710Nannochloropsis salina (N. salina CCMP1776)gene
NSK003719NSK003719Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01530.1NO05G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583900gene_2941Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g76gene2334Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01530.1NO05G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01530 ID=NO05G01530|Name=NO05G01530|organism=Nannochloropsis oceanica|type=gene|length=1869bp
TACTGGTTTTGTAAACAGAGGCGCAAGATCAGCAAAGCGACAGATCGAGC
TCGCCAGTTCAATCGGCTGACAAATGGAGGAGGCGTTGGAGAGATCTAGA
AGCGTGTGTGGGCTTGGGATGACGACGACGGGTGCACTGCAACGAGATAA
TGGTATGGATCCAAACGGCTCAGGCTCAAGCGTTGCCGCGCATTTGAAAT
GTCGCGCAATTTATGACGTCGCTGCCTGCTGCCTGCGAGCATTCAGCGCA
CCATTTGTCGTCGGAAGAGCGCGGGCTACACGCATCAATAATGACGAAAG
CCCACATACACAGGTCGTAAAATCAAATCCATCGGATGCCGCCAACATGG
GCCTCCTGACTCTGCCCCTCCCGCCATCCCTCATCCATCTCCCTTTACAC
CACAATCATCAATAATGCATGTCGCCTCTACCCCGAAAACCATCCATGAC
CTCGATGCCCTGGGAGCTCAAGTCGATCTGTCGCTTCTGTATGTCGATGA
CCACCTAATTGTTGTCAACAAGCAGGTTGGGCTCAGTACCATTCCTGGCA
ATACGTTGGTCAAGGGAGAGGGCACGGACGAGGCTTCTTCGATAGAAGTG
AAACCGCCAGTACCATTGGAAAGTAGCACTGCAGACGCGGTCATGCTTCC
ATCTTTGTTAGCTCTCGATGAAGACCTAAAGCAATATTCCGCTGTATCGG
CGCAACCAGCTCTCGCTCAAGGCAATGACACCACATCGTCATCGCCTCCC
CTAGCGGCACCTCCATTCCCTGCCACCTCACCAAGCTCCCCCTCCCCACC
ACGACCAAACAACAAACGTAAACGCACTCATCAAGAGCTCTGGATGGACA
TGCTCACCGAAGACCCAGTCACTCTACAACATACCCTCAACCTGTCCGCC
GACCCATATCTCGCACGCACCCTTGCAAGCCTGCTCGCGCACAAATCCTC
CGTCCCTCGCAAACGTCACATTTTTGTCGAATGGGGCGTGCGTATTCTCA
AAGCCCCCTCAGACGTCATGGAAACGATATACGAGCGGCTACTCAAGGCA
TTCGAAGCCAAAGAGGGAAATCGTCAAGACTCGGTACAAACCCGGTTACT
CCGTGTCTTTCAACAAGTCAAAACAGTGCACCGCCTAGACTGCGAAACCT
CGGGAGCCTTAGTCCTGGCCCGGACAATGCAAGCCGCCCGAAGCCTAAGC
GCGCAATTCCGTGAAAAAAAGGTGGGCAAACGATACGTGGCTTTGGTGAA
GGGATGTCCGCTCTGGCCTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTC
GTTCCGATCGCGAAACACGCCCGAAGCAAGTCATGGACCCGGAAAGGGGG
AAAGAATCAAAAACCCTCTTTCGAACCGTATGTGTTGGTACTGCTGCTGG
TTGTGATGGTACTGTCGAAAGGATCACTCGTGTGGAGCTGACGCCTCTGA
CGGGAAGGACGCATCAGTTGAGGGTGCATATGGCAGCGCTGGGGCACCCT
ATTTTGGGGGACAGCATTTATTCGATGGGTGATAAATGGACGAAGAGTGA
CATGAGAGCTTTTGTGAAACCCTATTTGACTGAGGATGATCGGTTGGAGG
AAGAGGATGTGGAGGGACGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTG
TTGGAGGTGAAGGAGCGTACGTTGGAGACGAGGGGGGCACGCCTGCATTT
GCACGCTGAGATTTTGAGTTTTCACCATCCCATTTCCGGGGAACGGATTC
GATTCGAGGCTCGAGCACCGTTTTGAGAGATCGAAACGGCACAGGAAAAA
AAATAGCTTACACGCTTGCCCGGATCTGTATTGAATTGAAGATAACATAA
AGCCAGGTTGATAGTTGGG
back to top

protein sequence of NO05G01530.1

>NO05G01530.1-protein ID=NO05G01530.1-protein|Name=NO05G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MHVASTPKTIHDLDALGAQVDLSLLYVDDHLIVVNKQVGLSTIPGNTLVK
GEGTDEASSIEVKPPVPLESSTADAVMLPSLLALDEDLKQYSAVSAQPAL
AQGNDTTSSSPPLAAPPFPATSPSSPSPPRPNNKRKRTHQELWMDMLTED
PVTLQHTLNLSADPYLARTLASLLAHKSSVPRKRHIFVEWGVRILKAPSD
VMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALV
LARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRE
TRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTH
QLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVE
GRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEAR
APF*
back to top
Synonyms
Publications