NO05G01530.1, NO05G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01530.1
Unique NameNO05G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr5:429682..431550 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:429682..431550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01530.1 vs.
Match: EWM28290.1 (ribosomal large subunit pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 350.9 bits (899), Expect = 5.900e-93
Identity = 188/333 (56.46%), Postives = 237/333 (71.17%), Query Frame = 0 
Query:  132 NNKRKRTHQELWMDMLTEDPVTLQHTLNLSADPYLARTLASLLAHKSSVPRKRHIFVEWGVRILKAPSDVMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALVLARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRETRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTHQLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVEGRKEEGMKEGCVLEVKER-----------TLETRGARLHLHAEILSFHHPISGERIRFEARAPF 454
            + KR+RTHQELWMDMLT+D ++L+ ++N+ AD +LA+  ASL+AHKSSVPRKR  F++WG+R LKA  + +  +YE L +AFEA+EG R DSVQTRLL VFQ +KTVHRLDCETSG  VLART++AARSLS QFREK+V KRY+ALV     WPQ +GE+ LPIR DRETRPKQ++D + GK+ +TLFR   +GT    D   + + RVELTPLTGRTHQLRVHMAALGHPI+GDSIYS+ D+   S+M  F+KP+        +E++          GCV E++E+           T     ARLHLHAE+L F HP SGER+ F A A F
Sbjct:   83 SKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRV--LGTQRMGD---KEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPF--------QENI----------GCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
The following BLAST results are available for this feature:
BLAST of NO05G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28290.15.900e-9356.46ribosomal large subunit pseudouridine synthase a [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01530NO05G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01530.1NO05G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01530.1.cds1NO05G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01530.1 ID=NO05G01530.1|Name=NO05G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
TACTGGTTTTGTAAACAGAGGCGCAAGATCAGCAAAGCGACAGATCGAGC
TCGCCAGTTCAATCGGCTGACAAATGGAGGAGGCGTTGGAGAGATCTAGA
AGCGTGTGTGGGCTTGGGATGACGACGACGGGTGCACTGCAACGAGATAA
TGGTATGGATCCAAACGGCTCAGGCTCAAGCGTTGCCGCGCATTTGAAAT
GTCGCGCAATTTATGACGTCGCTGCCTGCTGCCTGCGAGCATTCAGCGCA
CCATTTGTCGTCGGAAGAGCGCGGGCTACACGCATCAATAATGACGAAAG
CCCACATACACAGGTCGTAAAATCAAATCCATCGGATGCCGCCAACATGG
GCCTCCTGACTCTGCCCCTCCCGCCATCCCTCATCCATCTCCCTTTACAC
CACAATCATCAATAATGCATGTCGCCTCTACCCCGAAAACCATCCATGAC
CTCGATGCCCTGGGAGCTCAAGTCGATCTGTCGCTTCTGTATGTCGATGA
CCACCTAATTGTTGTCAACAAGCAGGTTGGGCTCAGTACCATTCCTGGCA
ATACGTTGGTCAAGGGAGAGGGCACGGACGAGGCTTCTTCGATAGAAGTG
AAACCGCCAGTACCATTGGAAAGTAGCACTGCAGACGCGGTCATGCTTCC
ATCTTTGTTAGCTCTCGATGAAGACCTAAAGCAATATTCCGCTGTATCGG
CGCAACCAGCTCTCGCTCAAGGCAATGACACCACATCGTCATCGCCTCCC
CTAGCGGCACCTCCATTCCCTGCCACCTCACCAAGCTCCCCCTCCCCACC
ACGACCAAACAACAAACGTAAACGCACTCATCAAGAGCTCTGGATGGACA
TGCTCACCGAAGACCCAGTCACTCTACAACATACCCTCAACCTGTCCGCC
GACCCATATCTCGCACGCACCCTTGCAAGCCTGCTCGCGCACAAATCCTC
CGTCCCTCGCAAACGTCACATTTTTGTCGAATGGGGCGTGCGTATTCTCA
AAGCCCCCTCAGACGTCATGGAAACGATATACGAGCGGCTACTCAAGGCA
TTCGAAGCCAAAGAGGGAAATCGTCAAGACTCGGTACAAACCCGGTTACT
CCGTGTCTTTCAACAAGTCAAAACAGTGCACCGCCTAGACTGCGAAACCT
CGGGAGCCTTAGTCCTGGCCCGGACAATGCAAGCCGCCCGAAGCCTAAGC
GCGCAATTCCGTGAAAAAAAGGTGGGCAAACGATACGTGGCTTTGGTGAA
GGGATGTCCGCTCTGGCCTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTC
GTTCCGATCGCGAAACACGCCCGAAGCAAGTCATGGACCCGGAAAGGGGG
AAAGAATCAAAAACCCTCTTTCGAACCGTATGTGTTGGTACTGCTGCTGG
TTGTGATGGTACTGTCGAAAGGATCACTCGTGTGGAGCTGACGCCTCTGA
CGGGAAGGACGCATCAGTTGAGGGTGCATATGGCAGCGCTGGGGCACCCT
ATTTTGGGGGACAGCATTTATTCGATGGGTGATAAATGGACGAAGAGTGA
CATGAGAGCTTTTGTGAAACCCTATTTGACTGAGGATGATCGGTTGGAGG
AAGAGGATGTGGAGGGACGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTG
TTGGAGGTGAAGGAGCGTACGTTGGAGACGAGGGGGGCACGCCTGCATTT
GCACGCTGAGATTTTGAGTTTTCACCATCCCATTTCCGGGGAACGGATTC
GATTCGAGGCTCGAGCACCGTTTTGAGAGATCGAAACGGCACAGGAAAAA
AAATAGCTTACACGCTTGCCCGGATCTGTATTGAATTGAAGATAACATAA
AGCCAGGTTGATAGTTGGG
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protein sequence of NO05G01530.1

>NO05G01530.1-protein ID=NO05G01530.1-protein|Name=NO05G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MHVASTPKTIHDLDALGAQVDLSLLYVDDHLIVVNKQVGLSTIPGNTLVK
GEGTDEASSIEVKPPVPLESSTADAVMLPSLLALDEDLKQYSAVSAQPAL
AQGNDTTSSSPPLAAPPFPATSPSSPSPPRPNNKRKRTHQELWMDMLTED
PVTLQHTLNLSADPYLARTLASLLAHKSSVPRKRHIFVEWGVRILKAPSD
VMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALV
LARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRE
TRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTH
QLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVE
GRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEAR
APF*
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mRNA from alignment at chr5:429682..431550+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01530.1 ID=NO05G01530.1|Name=NO05G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp|location=Sequence derived from alignment at chr5:429682..431550+ (Nannochloropsis oceanica)
TACTGGTTTTGTAAACAGAGGCGCAAGATCAGCAAAGCGACAGATCGAGC
TCGCCAGTTCAATCGGCTGACAAATGGAGGAGGCGTTGGAGAGATCTAGA
AGCGTGTGTGGGCTTGGGATGACGACGACGGGTGCACTGCAACGAGATAA
TGGTATGGATCCAAACGGCTCAGGCTCAAGCGTTGCCGCGCATTTGAAAT
GTCGCGCAATTTATGACGTCGCTGCCTGCTGCCTGCGAGCATTCAGCGCA
CCATTTGTCGTCGGAAGAGCGCGGGCTACACGCATCAATAATGACGAAAG
CCCACATACACAGGTCGTAAAATCAAATCCATCGGATGCCGCCAACATGG
GCCTCCTGACTCTGCCCCTCCCGCCATCCCTCATCCATCTCCCTTTACAC
CACAATCATCAATAATGCATGTCGCCTCTACCCCGAAAACCATCCATGAC
CTCGATGCCCTGGGAGCTCAAGTCGATCTGTCGCTTCTGTATGTCGATGA
CCACCTAATTGTTGTCAACAAGCAGGTTGGGCTCAGTACCATTCCTGGCA
ATACGTTGGTCAAGGGAGAGGGCACGGACGAGGCTTCTTCGATAGAAGTG
AAACCGCCAGTACCATTGGAAAGTAGCACTGCAGACGCGGTCATGCTTCC
ATCTTTGTTAGCTCTCGATGAAGACCTAAAGCAATATTCCGCTGTATCGG
CGCAACCAGCTCTCGCTCAAGGCAATGACACCACATCGTCATCGCCTCCC
CTAGCGGCACCTCCATTCCCTGCCACCTCACCAAGCTCCCCCTCCCCACC
ACGACCAAACAACAAACGTAAACGCACTCATCAAGAGCTCTGGATGGACA
TGCTCACCGAAGACCCAGTCACTCTACAACATACCCTCAACCTGTCCGCC
GACCCATATCTCGCACGCACCCTTGCAAGCCTGCTCGCGCACAAATCCTC
CGTCCCTCGCAAACGTCACATTTTTGTCGAATGGGGCGTGCGTATTCTCA
AAGCCCCCTCAGACGTCATGGAAACGATATACGAGCGGCTACTCAAGGCA
TTCGAAGCCAAAGAGGGAAATCGTCAAGACTCGGTACAAACCCGGTTACT
CCGTGTCTTTCAACAAGTCAAAACAGTGCACCGCCTAGACTGCGAAACCT
CGGGAGCCTTAGTCCTGGCCCGGACAATGCAAGCCGCCCGAAGCCTAAGC
GCGCAATTCCGTGAAAAAAAGGTGGGCAAACGATACGTGGCTTTGGTGAA
GGGATGTCCGCTCTGGCCTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTC
GTTCCGATCGCGAAACACGCCCGAAGCAAGTCATGGACCCGGAAAGGGGG
AAAGAATCAAAAACCCTCTTTCGAACCGTATGTGTTGGTACTGCTGCTGG
TTGTGATGGTACTGTCGAAAGGATCACTCGTGTGGAGCTGACGCCTCTGA
CGGGAAGGACGCATCAGTTGAGGGTGCATATGGCAGCGCTGGGGCACCCT
ATTTTGGGGGACAGCATTTATTCGATGGGTGATAAATGGACGAAGAGTGA
CATGAGAGCTTTTGTGAAACCCTATTTGACTGAGGATGATCGGTTGGAGG
AAGAGGATGTGGAGGGACGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTG
TTGGAGGTGAAGGAGCGTACGTTGGAGACGAGGGGGGCACGCCTGCATTT
GCACGCTGAGATTTTGAGTTTTCACCATCCCATTTCCGGGGAACGGATTC
GATTCGAGGCTCGAGCACCGTTTTGAGAGATCGAAACGGCACAGGAAAAA
AAATAGCTTACACGCTTGCCCGGATCTGTATTGAATTGAAGATAACATAA
AGCCAGGTTGATAGTTGGG
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Coding sequence (CDS) from alignment at chr5:429682..431550+

>NO05G01530.1 ID=NO05G01530.1|Name=NO05G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr5:429682..431550+ (Nannochloropsis oceanica)
ATGCATGTCGCCTCTACCCCGAAAACCATCCATGACCTCGATGCCCTGGG
AGCTCAAGTCGATCTGTCGCTTCTGTATGTCGATGACCACCTAATTGTTG
TCAACAAGCAGGTTGGGCTCAGTACCATTCCTGGCAATACGTTGGTCAAG
GGAGAGGGCACGGACGAGGCTTCTTCGATAGAAGTGAAACCGCCAGTACC
ATTGGAAAGTAGCACTGCAGACGCGGTCATGCTTCCATCTTTGTTAGCTC
TCGATGAAGACCTAAAGCAATATTCCGCTGTATCGGCGCAACCAGCTCTC
GCTCAAGGCAATGACACCACATCGTCATCGCCTCCCCTAGCGGCACCTCC
ATTCCCTGCCACCTCACCAAGCTCCCCCTCCCCACCACGACCAAACAACA
AACGTAAACGCACTCATCAAGAGCTCTGGATGGACATGCTCACCGAAGAC
CCAGTCACTCTACAACATACCCTCAACCTGTCCGCCGACCCATATCTCGC
ACGCACCCTTGCAAGCCTGCTCGCGCACAAATCCTCCGTCCCTCGCAAAC
GTCACATTTTTGTCGAATGGGGCGTGCGTATTCTCAAAGCCCCCTCAGAC
GTCATGGAAACGATATACGAGCGGCTACTCAAGGCATTCGAAGCCAAAGA
GGGAAATCGTCAAGACTCGGTACAAACCCGGTTACTCCGTGTCTTTCAAC
AAGTCAAAACAGTGCACCGCCTAGACTGCGAAACCTCGGGAGCCTTAGTC
CTGGCCCGGACAATGCAAGCCGCCCGAAGCCTAAGCGCGCAATTCCGTGA
AAAAAAGGTGGGCAAACGATACGTGGCTTTGGTGAAGGGATGTCCGCTCT
GGCCTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTCGTTCCGATCGCGAA
ACACGCCCGAAGCAAGTCATGGACCCGGAAAGGGGGAAAGAATCAAAAAC
CCTCTTTCGAACCGTATGTGTTGGTACTGCTGCTGGTTGTGATGGTACTG
TCGAAAGGATCACTCGTGTGGAGCTGACGCCTCTGACGGGAAGGACGCAT
CAGTTGAGGGTGCATATGGCAGCGCTGGGGCACCCTATTTTGGGGGACAG
CATTTATTCGATGGGTGATAAATGGACGAAGAGTGACATGAGAGCTTTTG
TGAAACCCTATTTGACTGAGGATGATCGGTTGGAGGAAGAGGATGTGGAG
GGACGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTGTTGGAGGTGAAGGA
GCGTACGTTGGAGACGAGGGGGGCACGCCTGCATTTGCACGCTGAGATTT
TGAGTTTTCACCATCCCATTTCCGGGGAACGGATTCGATTCGAGGCTCGA
GCACCGTTTTGA
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Synonyms
Publications