NO05G01520, NO05G01520 (gene) Nannochloropsis oceanica

Overview
NameNO05G01520
Unique NameNO05G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr5:427925..429649 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:427925..429649 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G01520 vs. NCBI_GenBank
Match: EWM28212.1 (hypothetical protein Naga_100004g75 [Nannochloropsis gaditana])

HSP 1 Score: 383.6 bits (984), Expect = 6.600e-103
Identity = 193/310 (62.26%), Postives = 230/310 (74.19%), Query Frame = 0 
Query:    1 MPYVRSNWDGITQFNGGNKFELGQVHSLNEVKLARPLQAGPRGCFLHVTMENESCVSYLEMVVSAKAVELYVLKGGRGASGEYVHIGGLKGRPAVDHPFKYHYKFSAADLPEARIALLQLRLTPHAEDAKEVYVFRLSVLVGDANTRHKSNIVSSISSMQGPLAIEGQVRHAGTSGMRGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQVALVGSGGEGAVVAEALNDVMGKMLAVVSKKTKGYVGSTYKRTEDKIAERMRSMETKISGFEQVVGQSLERRLLDLEHVMATLNERI 311
            MPYVRSNW+G+T+FNGG+KFE+G VHS NEVKLARPLQAGP+GCFLHVTME ++ VSY+EMV SA+ VE+YVLKGG GASGEY  +GG +GRPAVDHP+KYHYKF+++DLP+  +AL+QLRLTPH EDA+EVY+FRLSVLVG+AN+RH+SNI   I  +Q  L + G  ++        T                                         NQV   GSG EGAVVA+ALNDVMGKML VVS+KTKGYVGSTYK+TEDKI+ RM+S+E KISGFE+VVGQ+LERRLLDLEHVMATLNERI
Sbjct:    1 MPYVRSNWEGLTKFNGGHKFEVGHVHSFNEVKLARPLQAGPKGCFLHVTMEKDARVSYMEMVTSAREVEMYVLKGGHGASGEYSKVGGQRGRPAVDHPYKYHYKFTSSDLPDVPVALVQLRLTPHEEDAREVYLFRLSVLVGEANSRHRSNISRGIGGLQDALTVSGNGKYLSGHSSTNT-------SMVPMSTGRRNSSSQGPQQGQYGSSGVVATRNNENQVVPAGSGAEGAVVADALNDVMGKMLTVVSRKTKGYVGSTYKKTEDKISARMKSIEAKISGFEEVVGQNLERRLLDLEHVMATLNERI 303
The following BLAST results are available for this feature:
BLAST of NO05G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28212.16.600e-10362.26hypothetical protein Naga_100004g75 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003720NSK003720Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01520.1NO05G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100004g75gene2333Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01520.1NO05G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01520 ID=NO05G01520|Name=NO05G01520|organism=Nannochloropsis oceanica|type=gene|length=1725bp
ACAGCACGTCAAACCCACCCCCCCTTTACCTCGGCCCAGTTCTGCTTGCA
CGGAACATCGAAAGACACGCTCTGCCTTCCATCCTTTCAGCCCACCCATA
GGAATCAAGCATGCCGTACGTGCGTTCCAACTGGGATGGGATCACGCAGT
TCAACGGGGGTAACAAGTTCGAGCTTGGCCAGGTCCACTCCCTAAACGAG
GTCAAGCTTGCTCGCCCCTTGCAGGCAGGCCCTCGGGGCTGTTTCCTCCA
CGgtacgtaatttgagtggcattggaagtgtgtatatcaaggaaggggta
ggaggcatgtggcaatgaaaatgcgtggatagtttacgaaagtaggtgtc
gaggagcttgaaggcagctctgtgcatgccggccccttaccctcatacga
gccaaacctcaaaaaactccagacagattcggaggttcctgttcccattt
taatttcatgcatccactccccgaggcaagactccatgctctcttccctt
caactcaccgccaatcacctaccacccttccaccaaaactcagTAACCAT
GGAAAACGAATCCTGTGTCTCCTATCTCGAAATGGTCGTCTCGGCCAAAG
CCGTTGAGCTCTACGTGCTCAAAGGCGGACGAGGCGCATCGGGCGAGTAT
GTCCATATCGGGGGCCTCAAGGGTCGTCCCGCGGTCGACCATCCCTTCAA
ATACCACTACAAATTCAGCGCTGCTGACCTCCCTGAGGCACGTATAGCTC
TCTTGCAGCTGCGGCTAACCCCGCATGCAGAGGATGCAAAGGAAGTGTAC
GTGTTCCGTTTATCCGTTTTGGTGGGCGACGCAAATACGAGGCATAAATC
GAATATTGTCAGCAGCATAAGCTCGATGCAGGGGCCATTGGCCATAGAGG
GGCAGGTCAGGCATGCAGGCACCAGCGGAATGAGGGGCACCACCACAAGC
ATGATTGCTCTCGGAGGAGGGGAAAGGAGAGGGTGGTCCATACAGCAGCA
GCAGCAGCAGCAGCAGCAGGGGCAATATCGGGGAGGGGGGGTGGTCGCGA
CGAGGAATAATGCGAATCAGGTGGCGCTGGTTGGGAGTGGCGGGGAGGGA
GCAGTGGTTGCAGAGGCCTTGAATGACGTGATGGGGAAGATGCTGGCGGT
GGTGAGTAAGAAAACGAAAGGGTACGTTGGATCGACGTACAAGAGGACAG
AAGACAAAATCGCGGAGAGAATGAGGTCAATGGAGACCAAAATTTCGGGA
TTTGAGCAAGTGGTTGGTCAGAGCCTCGAGCGGCGGCTCTTGGATCTAGA
ACACGTCATGGCTACCTTAAACGAACGGATCATTTCAGAAGAGGAAAGAA
AGGAGGAAGTGGTAGGAAAGGGAGGCAAAAAGAAGAGGACTAAGGGGAAG
GAGGGGAAGAGAAGAGTGCGGAAGGGGCATCCAGGAGGAGTGGAGGAGAG
TAAGGGTGGGGAGGGAGGGCGGGCGGCGGGAAGCCAGCAGCGATAGCAAT
ATTTTTCCACCTGATTTATATAAGCAAAGCATGTATTCAGGACCAACTAG
ACGGAGATTAGGTTTGTGTGATCAAGCAAGATTGTCTGGCAGGGAGGGAA
AATGTGAAAACGGAAAGTATAAGGGAATGGAGATAGTGAGGGAACACAAG
GACGTGCGAATAACACTCAAGCGCCGCGCCTTAACAAGCACAAAACTAAA
ATCAAATAGCTACATTTGTGTGTCT
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protein sequence of NO05G01520.1

>NO05G01520.1-protein ID=NO05G01520.1-protein|Name=NO05G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MPYVRSNWDGITQFNGGNKFELGQVHSLNEVKLARPLQAGPRGCFLHVTM
ENESCVSYLEMVVSAKAVELYVLKGGRGASGEYVHIGGLKGRPAVDHPFK
YHYKFSAADLPEARIALLQLRLTPHAEDAKEVYVFRLSVLVGDANTRHKS
NIVSSISSMQGPLAIEGQVRHAGTSGMRGTTTSMIALGGGERRGWSIQQQ
QQQQQQGQYRGGGVVATRNNANQVALVGSGGEGAVVAEALNDVMGKMLAV
VSKKTKGYVGSTYKRTEDKIAERMRSMETKISGFEQVVGQSLERRLLDLE
HVMATLNERIISEEERKEEVVGKGGKKKRTKGKEGKRRVRKGHPGGVEES
KGGEGGRAAGSQQR*
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Synonyms
Publications